Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:24675964-25435975

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ripor2 13 24582189 to 24733816 151627 + protein coding gene RHO family interacting cell polarization regulator 2
Tssr118936 13 24676823 to 24676838 15 + TSS region transcription start site region 118936
Tssr121807 13 24703497 to 24703538 41 - TSS region transcription start site region 121807
Tssr118937 13 24706074 to 24706089 15 + TSS region transcription start site region 118937
Cpgi5383 13 24713639 to 24713921 282 CpG island CpG island 5383
Tssr118938 13 24721673 to 24721683 10 + TSS region transcription start site region 118938
Tssr118939 13 24721692 to 24721701 9 + TSS region transcription start site region 118939
Tssr118940 13 24722586 to 24722588 2 + TSS region transcription start site region 118940
Tssr118941 13 24729641 to 24729645 4 + TSS region transcription start site region 118941
Tssr118942 13 24741198 to 24741203 5 + TSS region transcription start site region 118942
Tssr118943 13 24741210 to 24741237 27 + TSS region transcription start site region 118943
Armh2 13 24741232 to 24746592 5360 + protein coding gene armadillo-like helical domain containing 2
Gmnn 13 24751845 to 24761923 10078 - protein coding gene geminin
Cpgi5384 13 24761185 to 24762213 1028 CpG island CpG island 5384
Tssr121808 13 24761443 to 24761458 15 - TSS region transcription start site region 121808
Tssr118944 13 24761550 to 24761594 44 + TSS region transcription start site region 118944
Tssr121809 13 24761875 to 24761950 75 - TSS region transcription start site region 121809
Tssr118945 13 24773100 to 24773104 4 + TSS region transcription start site region 118945
Cpgi5385 13 24799931 to 24800365 434 CpG island CpG island 5385
Cpgi5386 13 24800648 to 24802431 1783 CpG island CpG island 5386
Tssr121810 13 24800752 to 24800772 20 - TSS region transcription start site region 121810
Tssr121811 13 24800778 to 24800789 11 - TSS region transcription start site region 121811
Tssr118946 13 24801137 to 24801158 21 + TSS region transcription start site region 118946
Tssr118947 13 24801171 to 24801184 13 + TSS region transcription start site region 118947
Tssr118948 13 24801194 to 24801213 19 + TSS region transcription start site region 118948
Tssr118949 13 24801332 to 24801339 7 + TSS region transcription start site region 118949
BC005537 13 24801657 to 24812899 11242 + protein coding gene cDNA sequence BC005537
Tssr118950 13 24802857 to 24802867 10 + TSS region transcription start site region 118950
Tssr118951 13 24802869 to 24802893 24 + TSS region transcription start site region 118951
Tssr118952 13 24802957 to 24802972 15 + TSS region transcription start site region 118952
Tssr118953 13 24802991 to 24803008 17 + TSS region transcription start site region 118953
Tssr118954 13 24803018 to 24803035 17 + TSS region transcription start site region 118954
Tssr118955 13 24803351 to 24803367 16 + TSS region transcription start site region 118955
Tssr118956 13 24803701 to 24803713 12 + TSS region transcription start site region 118956
Tssr118957 13 24804909 to 24804929 20 + TSS region transcription start site region 118957
Tssr118958 13 24806927 to 24806932 5 + TSS region transcription start site region 118958
Gm22358 13 24811447 to 24811568 121 - snoRNA gene predicted gene, 22358
Tssr118959 13 24812711 to 24812722 11 + TSS region transcription start site region 118959
Tssr118960 13 24813336 to 24813352 16 + TSS region transcription start site region 118960
Tssr118961 13 24813398 to 24813451 53 + TSS region transcription start site region 118961
Tssr118962 13 24813454 to 24813487 33 + TSS region transcription start site region 118962
Tssr118963 13 24813492 to 24813505 13 + TSS region transcription start site region 118963
Tssr118964 13 24813506 to 24813522 16 + TSS region transcription start site region 118964
Tssr118965 13 24813533 to 24813544 11 + TSS region transcription start site region 118965
Tssr118966 13 24813554 to 24813570 16 + TSS region transcription start site region 118966
Tssr118967 13 24813667 to 24813713 46 + TSS region transcription start site region 118967
Tssr118968 13 24813729 to 24813762 33 + TSS region transcription start site region 118968
Tssr118969 13 24814047 to 24814052 5 + TSS region transcription start site region 118969
Acot13 13 24817955 to 24831489 13534 - protein coding gene acyl-CoA thioesterase 13
Cpgi5387 13 24831111 to 24832380 1269 CpG island CpG island 5387
Tssr121812 13 24831322 to 24831333 11 - TSS region transcription start site region 121812
Tssr121813 13 24831337 to 24831348 11 - TSS region transcription start site region 121813
Tssr121814 13 24831353 to 24831408 55 - TSS region transcription start site region 121814
Tssr121815 13 24831409 to 24831518 109 - TSS region transcription start site region 121815
Tssr121816 13 24831588 to 24831639 51 - TSS region transcription start site region 121816
Tssr118970 13 24831661 to 24831687 26 + TSS region transcription start site region 118970
Tdp2 13 24831679 to 24842153 10474 + protein coding gene tyrosyl-DNA phosphodiesterase 2
Tssr118971 13 24831700 to 24831721 21 + TSS region transcription start site region 118971
Cpgi5388 13 24844898 to 24845381 483 CpG island CpG island 5388
Tssr118972 13 24845106 to 24845120 14 + TSS region transcription start site region 118972
Tssr118973 13 24845122 to 24845186 64 + TSS region transcription start site region 118973
D130043K22Rik 13 24845135 to 24901270 56135 + protein coding gene RIKEN cDNA D130043K22 gene
Tssr118974 13 24879865 to 24879870 5 + TSS region transcription start site region 118974
Tssr118975 13 24905592 to 24905609 17 + TSS region transcription start site region 118975
4932702P03Rik 13 24905600 to 24911780 6180 + antisense lncRNA gene RIKEN cDNA 4932702P03 gene
Tssr118976 13 24905616 to 24905633 17 + TSS region transcription start site region 118976
Tssr118977 13 24905635 to 24905647 12 + TSS region transcription start site region 118977
Tssr118978 13 24905656 to 24905661 5 + TSS region transcription start site region 118978
Aldh5a1 13 24907579 to 24937661 30082 - protein coding gene aldhehyde dehydrogenase family 5, subfamily A1
Cpgi5389 13 24937084 to 24938170 1086 CpG island CpG island 5389
Tssr118979 13 24937144 to 24937166 22 + TSS region transcription start site region 118979
Tssr118980 13 24937178 to 24937204 26 + TSS region transcription start site region 118980
Tssr118981 13 24937208 to 24937219 11 + TSS region transcription start site region 118981
9330162012Rik 13 24937401 to 24939049 1648 + bidirectional promoter lncRNA gene cDNA RIKEN 9330162012 gene
Tssr121817 13 24937585 to 24937691 106 - TSS region transcription start site region 121817
Tssr118982 13 24942690 to 24942711 21 + TSS region transcription start site region 118982
Tssr118983 13 24942714 to 24942764 50 + TSS region transcription start site region 118983
Tssr118984 13 24942895 to 24942930 35 + TSS region transcription start site region 118984
Tssr118985 13 24943144 to 24943164 20 + TSS region transcription start site region 118985
Gpld1 13 24943152 to 24992501 49349 + protein coding gene glycosylphosphatidylinositol specific phospholipase D1
Tssr118986 13 24943165 to 24943176 11 + TSS region transcription start site region 118986
Tssr118987 13 24943180 to 24943207 27 + TSS region transcription start site region 118987
Tssr118988 13 24943212 to 24943222 10 + TSS region transcription start site region 118988
Tssr118989 13 24943485 to 24943509 24 + TSS region transcription start site region 118989
Tssr118990 13 24943518 to 24943531 13 + TSS region transcription start site region 118990
Tssr118991 13 24943542 to 24943562 20 + TSS region transcription start site region 118991
Tssr118992 13 24943567 to 24943576 9 + TSS region transcription start site region 118992
Tssr118993 13 24943578 to 24943593 15 + TSS region transcription start site region 118993
Tssr118994 13 24943595 to 24943606 11 + TSS region transcription start site region 118994
Tssr118995 13 24964279 to 24964285 6 + TSS region transcription start site region 118995
Gm34019 13 24965108 to 24968304 3196 - lncRNA gene predicted gene, 34019
Tssr4020 13 24966952 to 24966954 2 - TSS region transcription start site region 4020
Mrs2 13 24987483 to 25020365 32882 - protein coding gene MRS2 magnesium transporter
Gm9983 13 24989318 to 24989644 326 protein coding gene predicted gene 9983
Tssr118996 13 24990366 to 24990409 43 + TSS region transcription start site region 118996
Cpgi5390 13 25019655 to 25020658 1003 CpG island CpG island 5390
Tssr121818 13 25020104 to 25020113 9 - TSS region transcription start site region 121818
Tssr121819 13 25020118 to 25020137 19 - TSS region transcription start site region 121819
Tssr121820 13 25020289 to 25020346 57 - TSS region transcription start site region 121820
Gm47605 13 25035059 to 25035328 269 + pseudogene predicted gene, 47605
Cpgi5391 13 25054967 to 25056545 1578 CpG island CpG island 5391
Tssr118997 13 25055278 to 25055297 19 + TSS region transcription start site region 118997
Tssr118998 13 25055464 to 25055497 33 + TSS region transcription start site region 118998
Tssr118999 13 25055964 to 25055975 11 + TSS region transcription start site region 118999
Dcdc2a 13 25056004 to 25210706 154702 + protein coding gene doublecortin domain containing 2a
Tssr119000 13 25056044 to 25056054 10 + TSS region transcription start site region 119000
Tssr119001 13 25056155 to 25056205 50 + TSS region transcription start site region 119001
Tssr119002 13 25056206 to 25056219 13 + TSS region transcription start site region 119002
D13Mit58 13 25073027 to 25073158 131 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 58
Tssr119003 13 25074691 to 25074721 30 + TSS region transcription start site region 119003
Tssr119004 13 25074748 to 25074756 8 + TSS region transcription start site region 119004
Tssr119005 13 25097575 to 25097579 4 + TSS region transcription start site region 119005
Tssr119006 13 25127251 to 25127257 6 + TSS region transcription start site region 119006
Gm11348 13 25130747 to 25131064 317 - pseudogene predicted gene 11348
Tssr119007 13 25151722 to 25151745 23 + TSS region transcription start site region 119007
4930483C01Rik 13 25170721 to 25171830 1109 unclassified gene RIKEN cDNA 4930483C01 gene
Tssr119008 13 25187438 to 25187456 18 + TSS region transcription start site region 119008
Tssr119009 13 25191881 to 25191886 5 + TSS region transcription start site region 119009
Tssr119010 13 25208386 to 25208391 5 + TSS region transcription start site region 119010
D13Mit176 13 25225237 to 25225371 134 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 176
Nrsn1 13 25252039 to 25269996 17957 - protein coding gene neurensin 1
Tssr121821 13 25269166 to 25269213 47 - TSS region transcription start site region 121821
Cpgi5392 13 25269721 to 25270224 503 CpG island CpG island 5392
Tssr121822 13 25269898 to 25269907 9 - TSS region transcription start site region 121822
Tssr121823 13 25269913 to 25269914 1 - TSS region transcription start site region 121823
Tssr121824 13 25269920 to 25270025 105 - TSS region transcription start site region 121824
Tssr121825 13 25270036 to 25270050 14 - TSS region transcription start site region 121825
Tssr121826 13 25270076 to 25270094 18 - TSS region transcription start site region 121826
D13Mit163 13 25332198 to 25332338 140 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 163
Gm34122 13 25360511 to 25371720 11209 + lncRNA gene predicted gene, 34122
F830002E08Rik 13 25428169 to 25430127 1958 - unclassified gene RIKEN cDNA F830002E08 gene