Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:23829998-24000011

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35 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D13Mit1001 13 23829876 to 23830144 268 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1001
Tssr118873 13 23836897 to 23836910 13 + TSS region transcription start site region 118873
Tssr118874 13 23836926 to 23836961 35 + TSS region transcription start site region 118874
Tssr118875 13 23839401 to 23839442 41 + TSS region transcription start site region 118875
Slc17a3 13 23839434 to 23860716 21282 + protein coding gene solute carrier family 17 (sodium phosphate), member 3
Tssr118876 13 23839445 to 23839470 25 + TSS region transcription start site region 118876
Tssr118877 13 23839577 to 23839587 10 + TSS region transcription start site region 118877
Tssr118878 13 23839598 to 23839620 22 + TSS region transcription start site region 118878
Tssr4011 13 23839625 to 23839628 3 + TSS region transcription start site region 4011
Tssr4012 13 23839723 to 23839732 9 + TSS region transcription start site region 4012
Slc17a1 13 23867750 to 23895730 27980 + protein coding gene solute carrier family 17 (sodium phosphate), member 1
Tssr4013 13 23867983 to 23868013 30 + TSS region transcription start site region 4013
Tssr118879 13 23870259 to 23870266 7 + TSS region transcription start site region 118879
Tssr118880 13 23870284 to 23870308 24 + TSS region transcription start site region 118880
Tssr118881 13 23880882 to 23880884 2 + TSS region transcription start site region 118881
Tssr121757 13 23892664 to 23892709 45 - TSS region transcription start site region 121757
Tssr118882 13 23892807 to 23892818 11 + TSS region transcription start site region 118882
Slc17a4 13 23897879 to 23915009 17130 - protein coding gene solute carrier family 17 (sodium phosphate), member 4
Tssr121758 13 23914976 to 23914989 13 - TSS region transcription start site region 121758
Tssr121759 13 23914998 to 23915011 13 - TSS region transcription start site region 121759
Snrp1c-ps2 13 23923800 to 23924164 364 - pseudogene U1 small nuclear ribonucleoprotein 1C, pseudogene 2
Gm33516 13 23933086 to 23949115 16029 + lncRNA gene predicted gene, 33516
Hist1h2ba 13 23933773 to 23934156 383 - protein coding gene histone cluster 1, H2ba
Tssr121760 13 23934210 to 23934225 15 - TSS region transcription start site region 121760
Tssr118883 13 23934434 to 23934439 5 + TSS region transcription start site region 118883
Hist1h2aa 13 23934462 to 23934851 389 + protein coding gene histone cluster 1, H2aa
Cpgi5378 13 23934467 to 23934884 417 CpG island CpG island 5378
Gm44344 13 23934707 to 23934835 128 - miRNA gene predicted gene, 44344
Scgn 13 23953456 to 23991214 37758 - protein coding gene secretagogin, EF-hand calcium binding protein
Gm11339 13 23956809 to 23966175 9366 + antisense lncRNA gene predicted gene 11339
Tssr121761 13 23967138 to 23967145 7 - TSS region transcription start site region 121761
Tssr121762 13 23967155 to 23967179 24 - TSS region transcription start site region 121762
Tssr118884 13 23967281 to 23967287 6 + TSS region transcription start site region 118884
Cpgi5379 13 23990914 to 23991353 439 CpG island CpG island 5379
Tssr121763 13 23991158 to 23991181 23 - TSS region transcription start site region 121763