Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:23825602-24385613

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D13Mit1001 13 23829876 to 23830144 268 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1001
Tssr118873 13 23836897 to 23836910 13 + TSS region transcription start site region 118873
Tssr118874 13 23836926 to 23836961 35 + TSS region transcription start site region 118874
Tssr118875 13 23839401 to 23839442 41 + TSS region transcription start site region 118875
Slc17a3 13 23839434 to 23860716 21282 + protein coding gene solute carrier family 17 (sodium phosphate), member 3
Tssr118876 13 23839445 to 23839470 25 + TSS region transcription start site region 118876
Tssr118877 13 23839577 to 23839587 10 + TSS region transcription start site region 118877
Tssr118878 13 23839598 to 23839620 22 + TSS region transcription start site region 118878
Tssr4011 13 23839625 to 23839628 3 + TSS region transcription start site region 4011
Tssr4012 13 23839723 to 23839732 9 + TSS region transcription start site region 4012
Slc17a1 13 23867750 to 23895730 27980 + protein coding gene solute carrier family 17 (sodium phosphate), member 1
Tssr4013 13 23867983 to 23868013 30 + TSS region transcription start site region 4013
Tssr118879 13 23870259 to 23870266 7 + TSS region transcription start site region 118879
Tssr118880 13 23870284 to 23870308 24 + TSS region transcription start site region 118880
Tssr118881 13 23880882 to 23880884 2 + TSS region transcription start site region 118881
Tssr121757 13 23892664 to 23892709 45 - TSS region transcription start site region 121757
Tssr118882 13 23892807 to 23892818 11 + TSS region transcription start site region 118882
Slc17a4 13 23897879 to 23915009 17130 - protein coding gene solute carrier family 17 (sodium phosphate), member 4
Tssr121758 13 23914976 to 23914989 13 - TSS region transcription start site region 121758
Tssr121759 13 23914998 to 23915011 13 - TSS region transcription start site region 121759
Snrp1c-ps2 13 23923800 to 23924164 364 - pseudogene U1 small nuclear ribonucleoprotein 1C, pseudogene 2
Gm33516 13 23933086 to 23949115 16029 + lncRNA gene predicted gene, 33516
Hist1h2ba 13 23933773 to 23934156 383 - protein coding gene histone cluster 1, H2ba
Tssr121760 13 23934210 to 23934225 15 - TSS region transcription start site region 121760
Tssr118883 13 23934434 to 23934439 5 + TSS region transcription start site region 118883
Hist1h2aa 13 23934462 to 23934851 389 + protein coding gene histone cluster 1, H2aa
Cpgi5378 13 23934467 to 23934884 417 CpG island CpG island 5378
Gm44344 13 23934707 to 23934835 128 - miRNA gene predicted gene, 44344
Scgn 13 23953456 to 23991214 37758 - protein coding gene secretagogin, EF-hand calcium binding protein
Gm11339 13 23956809 to 23966175 9366 + antisense lncRNA gene predicted gene 11339
Tssr121761 13 23967138 to 23967145 7 - TSS region transcription start site region 121761
Tssr121762 13 23967155 to 23967179 24 - TSS region transcription start site region 121762
Tssr118884 13 23967281 to 23967287 6 + TSS region transcription start site region 118884
Cpgi5379 13 23990914 to 23991353 439 CpG island CpG island 5379
Tssr121763 13 23991158 to 23991181 23 - TSS region transcription start site region 121763
Carmil1 13 24012481 to 24280790 268309 - protein coding gene capping protein regulator and myosin 1 linker 1
Tssr4014 13 24024423 to 24024428 5 + TSS region transcription start site region 4014
D13Ertd224e 13 24057899 to 24058110 211 DNA segment DNA segment, Chr 13, ERATO Doi 224, expressed
Tssr121764 13 24059289 to 24059313 24 - TSS region transcription start site region 121764
Tssr121765 13 24059320 to 24059324 4 - TSS region transcription start site region 121765
4933427I18Rik 13 24059424 to 24067677 8253 protein coding gene RIKEN cDNA 4933427I18 gene
Tssr121766 13 24094464 to 24094539 75 - TSS region transcription start site region 121766
Tssr118885 13 24104298 to 24104342 44 + TSS region transcription start site region 118885
Tssr118886 13 24104364 to 24104373 9 + TSS region transcription start site region 118886
Tssr118887 13 24105566 to 24105579 13 + TSS region transcription start site region 118887
Tssr118888 13 24105602 to 24105613 11 + TSS region transcription start site region 118888
Tssr121767 13 24135084 to 24135097 13 - TSS region transcription start site region 121767
Tssr121768 13 24155203 to 24155216 13 - TSS region transcription start site region 121768
Tssr118889 13 24159913 to 24159922 9 + TSS region transcription start site region 118889
Tssr121769 13 24178249 to 24178253 4 - TSS region transcription start site region 121769
Gm33573 13 24178265 to 24189252 10987 + lncRNA gene predicted gene, 33573
Gm11343 13 24195897 to 24196495 598 + pseudogene predicted gene 11343
Tssr121770 13 24206237 to 24206254 17 - TSS region transcription start site region 121770
Tssr121771 13 24206260 to 24206269 9 - TSS region transcription start site region 121771
Tssr121772 13 24206281 to 24206295 14 - TSS region transcription start site region 121772
Tssr121773 13 24222145 to 24222148 3 - TSS region transcription start site region 121773
Tssr121774 13 24257801 to 24257804 3 - TSS region transcription start site region 121774
Tssr121775 13 24272856 to 24272860 4 - TSS region transcription start site region 121775
Cpgi5380 13 24279993 to 24281559 1566 CpG island CpG island 5380
Tssr121776 13 24280765 to 24280778 13 - TSS region transcription start site region 121776
Tssr121777 13 24280948 to 24280995 47 - TSS region transcription start site region 121777
Tssr121778 13 24281224 to 24281277 53 - TSS region transcription start site region 121778
Tssr121779 13 24281292 to 24281325 33 - TSS region transcription start site region 121779
Gm11340 13 24291394 to 24291805 411 - pseudogene predicted gene 11340
Gm23340 13 24316730 to 24316852 122 - snoRNA gene predicted gene, 23340
Gm11341 13 24320302 to 24320748 446 + pseudogene predicted gene 11341
Gm11342 13 24324108 to 24371760 47652 - antisense lncRNA gene predicted gene 11342
Tssr4015 13 24327251 to 24327271 20 + TSS region transcription start site region 4015
Cmah 13 24327404 to 24477289 149885 + protein coding gene cytidine monophospho-N-acetylneuraminic acid hydroxylase
Tssr118890 13 24327415 to 24327461 46 + TSS region transcription start site region 118890
Tssr121780 13 24329023 to 24329035 12 - TSS region transcription start site region 121780
Tssr121781 13 24329045 to 24329052 7 - TSS region transcription start site region 121781
Tssr121782 13 24329124 to 24329147 23 - TSS region transcription start site region 121782
Tssr121783 13 24330205 to 24330218 13 - TSS region transcription start site region 121783
Tssr118891 13 24373511 to 24373517 6 + TSS region transcription start site region 118891
Tssr121784 13 24375942 to 24375959 17 - TSS region transcription start site region 121784
Tssr121785 13 24375962 to 24375972 10 - TSS region transcription start site region 121785
Tssr121786 13 24376022 to 24376033 11 - TSS region transcription start site region 121786
Tssr118892 13 24376034 to 24376045 11 + TSS region transcription start site region 118892
Tssr4016 13 24376050 to 24376061 11 + TSS region transcription start site region 4016
Tssr118893 13 24376070 to 24376109 39 + TSS region transcription start site region 118893
Tssr118894 13 24376134 to 24376145 11 + TSS region transcription start site region 118894
Tssr118895 13 24376168 to 24376197 29 + TSS region transcription start site region 118895
Tssr121787 13 24384019 to 24384061 42 - TSS region transcription start site region 121787