Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:23807128-25027139

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254 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc17a2 13 23806993 to 23825180 18187 + protein coding gene solute carrier family 17 (sodium phosphate), member 2
Tssr118872 13 23819868 to 23819870 2 + TSS region transcription start site region 118872
D13Mit1001 13 23829876 to 23830144 268 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1001
Tssr118873 13 23836897 to 23836910 13 + TSS region transcription start site region 118873
Tssr118874 13 23836926 to 23836961 35 + TSS region transcription start site region 118874
Tssr118875 13 23839401 to 23839442 41 + TSS region transcription start site region 118875
Slc17a3 13 23839434 to 23860716 21282 + protein coding gene solute carrier family 17 (sodium phosphate), member 3
Tssr118876 13 23839445 to 23839470 25 + TSS region transcription start site region 118876
Tssr118877 13 23839577 to 23839587 10 + TSS region transcription start site region 118877
Tssr118878 13 23839598 to 23839620 22 + TSS region transcription start site region 118878
Tssr4011 13 23839625 to 23839628 3 + TSS region transcription start site region 4011
Tssr4012 13 23839723 to 23839732 9 + TSS region transcription start site region 4012
Slc17a1 13 23867750 to 23895730 27980 + protein coding gene solute carrier family 17 (sodium phosphate), member 1
Tssr4013 13 23867983 to 23868013 30 + TSS region transcription start site region 4013
Tssr118879 13 23870259 to 23870266 7 + TSS region transcription start site region 118879
Tssr118880 13 23870284 to 23870308 24 + TSS region transcription start site region 118880
Tssr118881 13 23880882 to 23880884 2 + TSS region transcription start site region 118881
Tssr121757 13 23892664 to 23892709 45 - TSS region transcription start site region 121757
Tssr118882 13 23892807 to 23892818 11 + TSS region transcription start site region 118882
Slc17a4 13 23897879 to 23915009 17130 - protein coding gene solute carrier family 17 (sodium phosphate), member 4
Tssr121758 13 23914976 to 23914989 13 - TSS region transcription start site region 121758
Tssr121759 13 23914998 to 23915011 13 - TSS region transcription start site region 121759
Snrp1c-ps2 13 23923800 to 23924164 364 - pseudogene U1 small nuclear ribonucleoprotein 1C, pseudogene 2
Gm33516 13 23933086 to 23949115 16029 + lncRNA gene predicted gene, 33516
Hist1h2ba 13 23933773 to 23934156 383 - protein coding gene histone cluster 1, H2ba
Tssr121760 13 23934210 to 23934225 15 - TSS region transcription start site region 121760
Tssr118883 13 23934434 to 23934439 5 + TSS region transcription start site region 118883
Hist1h2aa 13 23934462 to 23934851 389 + protein coding gene histone cluster 1, H2aa
Cpgi5378 13 23934467 to 23934884 417 CpG island CpG island 5378
Gm44344 13 23934707 to 23934835 128 - miRNA gene predicted gene, 44344
Scgn 13 23953456 to 23991214 37758 - protein coding gene secretagogin, EF-hand calcium binding protein
Gm11339 13 23956809 to 23966175 9366 + antisense lncRNA gene predicted gene 11339
Tssr121761 13 23967138 to 23967145 7 - TSS region transcription start site region 121761
Tssr121762 13 23967155 to 23967179 24 - TSS region transcription start site region 121762
Tssr118884 13 23967281 to 23967287 6 + TSS region transcription start site region 118884
Cpgi5379 13 23990914 to 23991353 439 CpG island CpG island 5379
Tssr121763 13 23991158 to 23991181 23 - TSS region transcription start site region 121763
Carmil1 13 24012481 to 24280790 268309 - protein coding gene capping protein regulator and myosin 1 linker 1
Tssr4014 13 24024423 to 24024428 5 + TSS region transcription start site region 4014
D13Ertd224e 13 24057899 to 24058110 211 DNA segment DNA segment, Chr 13, ERATO Doi 224, expressed
Tssr121764 13 24059289 to 24059313 24 - TSS region transcription start site region 121764
Tssr121765 13 24059320 to 24059324 4 - TSS region transcription start site region 121765
4933427I18Rik 13 24059424 to 24067677 8253 protein coding gene RIKEN cDNA 4933427I18 gene
Tssr121766 13 24094464 to 24094539 75 - TSS region transcription start site region 121766
Tssr118885 13 24104298 to 24104342 44 + TSS region transcription start site region 118885
Tssr118886 13 24104364 to 24104373 9 + TSS region transcription start site region 118886
Tssr118887 13 24105566 to 24105579 13 + TSS region transcription start site region 118887
Tssr118888 13 24105602 to 24105613 11 + TSS region transcription start site region 118888
Tssr121767 13 24135084 to 24135097 13 - TSS region transcription start site region 121767
Tssr121768 13 24155203 to 24155216 13 - TSS region transcription start site region 121768
Tssr118889 13 24159913 to 24159922 9 + TSS region transcription start site region 118889
Tssr121769 13 24178249 to 24178253 4 - TSS region transcription start site region 121769
Gm33573 13 24178265 to 24189252 10987 + lncRNA gene predicted gene, 33573
Gm11343 13 24195897 to 24196495 598 + pseudogene predicted gene 11343
Tssr121770 13 24206237 to 24206254 17 - TSS region transcription start site region 121770
Tssr121771 13 24206260 to 24206269 9 - TSS region transcription start site region 121771
Tssr121772 13 24206281 to 24206295 14 - TSS region transcription start site region 121772
Tssr121773 13 24222145 to 24222148 3 - TSS region transcription start site region 121773
Tssr121774 13 24257801 to 24257804 3 - TSS region transcription start site region 121774
Tssr121775 13 24272856 to 24272860 4 - TSS region transcription start site region 121775
Cpgi5380 13 24279993 to 24281559 1566 CpG island CpG island 5380
Tssr121776 13 24280765 to 24280778 13 - TSS region transcription start site region 121776
Tssr121777 13 24280948 to 24280995 47 - TSS region transcription start site region 121777
Tssr121778 13 24281224 to 24281277 53 - TSS region transcription start site region 121778
Tssr121779 13 24281292 to 24281325 33 - TSS region transcription start site region 121779
Gm11340 13 24291394 to 24291805 411 - pseudogene predicted gene 11340
Gm23340 13 24316730 to 24316852 122 - snoRNA gene predicted gene, 23340
Gm11341 13 24320302 to 24320748 446 + pseudogene predicted gene 11341
Gm11342 13 24324108 to 24371760 47652 - antisense lncRNA gene predicted gene 11342
Tssr4015 13 24327251 to 24327271 20 + TSS region transcription start site region 4015
Cmah 13 24327404 to 24477289 149885 + protein coding gene cytidine monophospho-N-acetylneuraminic acid hydroxylase
Tssr118890 13 24327415 to 24327461 46 + TSS region transcription start site region 118890
Tssr121780 13 24329023 to 24329035 12 - TSS region transcription start site region 121780
Tssr121781 13 24329045 to 24329052 7 - TSS region transcription start site region 121781
Tssr121782 13 24329124 to 24329147 23 - TSS region transcription start site region 121782
Tssr121783 13 24330205 to 24330218 13 - TSS region transcription start site region 121783
Tssr118891 13 24373511 to 24373517 6 + TSS region transcription start site region 118891
Tssr121784 13 24375942 to 24375959 17 - TSS region transcription start site region 121784
Tssr121785 13 24375962 to 24375972 10 - TSS region transcription start site region 121785
Tssr121786 13 24376022 to 24376033 11 - TSS region transcription start site region 121786
Tssr118892 13 24376034 to 24376045 11 + TSS region transcription start site region 118892
Tssr4016 13 24376050 to 24376061 11 + TSS region transcription start site region 4016
Tssr118893 13 24376070 to 24376109 39 + TSS region transcription start site region 118893
Tssr118894 13 24376134 to 24376145 11 + TSS region transcription start site region 118894
Tssr118895 13 24376168 to 24376197 29 + TSS region transcription start site region 118895
Tssr121787 13 24384019 to 24384061 42 - TSS region transcription start site region 121787
Tssr121788 13 24391655 to 24391657 2 - TSS region transcription start site region 121788
Tssr118896 13 24395256 to 24395279 23 + TSS region transcription start site region 118896
Tssr118897 13 24397380 to 24397391 11 + TSS region transcription start site region 118897
Tssr118898 13 24397411 to 24397422 11 + TSS region transcription start site region 118898
Tssr118899 13 24397426 to 24397436 10 + TSS region transcription start site region 118899
D13Mit15 13 24399952 to 24400094 142 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 15
Tssr121789 13 24400345 to 24400346 1 - TSS region transcription start site region 121789
Gm11344 13 24410106 to 24410440 334 - pseudogene predicted gene 11344
Tssr118900 13 24414501 to 24414518 17 + TSS region transcription start site region 118900
Tssr121790 13 24414798 to 24414814 16 - TSS region transcription start site region 121790
Tssr121791 13 24414934 to 24414947 13 - TSS region transcription start site region 121791
Tssr121792 13 24414961 to 24414980 19 - TSS region transcription start site region 121792
Tssr121793 13 24415001 to 24415008 7 - TSS region transcription start site region 121793
Tssr118901 13 24415104 to 24415123 19 + TSS region transcription start site region 118901
Tssr121794 13 24415490 to 24415501 11 - TSS region transcription start site region 121794
Tssr118902 13 24416171 to 24416180 9 + TSS region transcription start site region 118902
Tssr118903 13 24416628 to 24416668 40 + TSS region transcription start site region 118903
Tssr118904 13 24416741 to 24416750 9 + TSS region transcription start site region 118904
Tssr118905 13 24416878 to 24416951 73 + TSS region transcription start site region 118905
Tssr118906 13 24416975 to 24416982 7 + TSS region transcription start site region 118906
Tssr4017 13 24417128 to 24417139 11 + TSS region transcription start site region 4017
Tssr118907 13 24417654 to 24417677 23 + TSS region transcription start site region 118907
Tssr118908 13 24434067 to 24434076 9 + TSS region transcription start site region 118908
Gm22013 13 24486662 to 24486764 102 - snRNA gene predicted gene, 22013
Tssr118909 13 24487272 to 24487322 50 + TSS region transcription start site region 118909
Tssr118910 13 24487831 to 24487838 7 + TSS region transcription start site region 118910
Tssr118911 13 24501539 to 24501576 37 + TSS region transcription start site region 118911
Tssr118912 13 24501577 to 24501598 21 + TSS region transcription start site region 118912
Tssr118913 13 24501613 to 24501625 12 + TSS region transcription start site region 118913
Tssr118914 13 24514941 to 24514944 3 + TSS region transcription start site region 118914
Tssr118915 13 24518197 to 24518229 32 + TSS region transcription start site region 118915
Tssr118916 13 24562941 to 24562942 1 + TSS region transcription start site region 118916
Tssr118917 13 24575557 to 24575569 12 + TSS region transcription start site region 118917
Tssr118918 13 24575573 to 24575585 12 + TSS region transcription start site region 118918
Ripor2 13 24582189 to 24733816 151627 + protein coding gene RHO family interacting cell polarization regulator 2
Tssr118919 13 24597465 to 24597507 42 + TSS region transcription start site region 118919
Gm11346 13 24598124 to 24604767 6643 - pseudogene predicted gene 11346
Tssr121795 13 24599533 to 24599541 8 - TSS region transcription start site region 121795
Tssr118920 13 24603244 to 24603252 8 + TSS region transcription start site region 118920
Tssr121796 13 24603794 to 24603805 11 - TSS region transcription start site region 121796
Tssr121797 13 24603859 to 24603867 8 - TSS region transcription start site region 121797
Tssr121798 13 24603868 to 24603886 18 - TSS region transcription start site region 121798
Tssr121799 13 24603892 to 24603904 12 - TSS region transcription start site region 121799
Tssr121800 13 24604214 to 24604231 17 - TSS region transcription start site region 121800
Tssr121801 13 24604789 to 24604795 6 - TSS region transcription start site region 121801
Cpgi5381 13 24604849 to 24605062 213 CpG island CpG island 5381
Tssr118921 13 24605078 to 24605081 3 + TSS region transcription start site region 118921
Tssr121802 13 24613614 to 24613623 9 - TSS region transcription start site region 121802
Tssr121803 13 24613650 to 24613678 28 - TSS region transcription start site region 121803
Tssr4018 13 24614085 to 24614093 8 - TSS region transcription start site region 4018
Tssr118922 13 24614205 to 24614214 9 + TSS region transcription start site region 118922
Tssr118923 13 24614218 to 24614244 26 + TSS region transcription start site region 118923
Tssr118924 13 24614576 to 24614583 7 + TSS region transcription start site region 118924
Tssr118925 13 24614588 to 24614603 15 + TSS region transcription start site region 118925
Tssr118926 13 24614608 to 24614634 26 + TSS region transcription start site region 118926
Tssr118927 13 24616859 to 24616865 6 + TSS region transcription start site region 118927
C530050E15Rik 13 24631918 to 24638567 6649 - lincRNA gene RIKEN cDNA C530050E15 gene
Tssr118928 13 24633464 to 24633477 13 + TSS region transcription start site region 118928
Tssr118929 13 24633582 to 24633604 22 + TSS region transcription start site region 118929
Tssr121804 13 24634426 to 24634449 23 - TSS region transcription start site region 121804
Tssr4019 13 24634657 to 24634667 10 + TSS region transcription start site region 4019
Tssr118930 13 24634677 to 24634684 7 + TSS region transcription start site region 118930
Tssr121805 13 24635916 to 24635924 8 - TSS region transcription start site region 121805
Tssr118931 13 24636028 to 24636030 2 + TSS region transcription start site region 118931
Tssr118932 13 24636093 to 24636094 1 + TSS region transcription start site region 118932
Cpgi5382 13 24638305 to 24639386 1081 CpG island CpG island 5382
Tssr118933 13 24638484 to 24638510 26 + TSS region transcription start site region 118933
Tssr118934 13 24638636 to 24638736 100 + TSS region transcription start site region 118934
Tssr121806 13 24640299 to 24640310 11 - TSS region transcription start site region 121806
Tssr118935 13 24651434 to 24651438 4 + TSS region transcription start site region 118935
Tssr118936 13 24676823 to 24676838 15 + TSS region transcription start site region 118936
Tssr121807 13 24703497 to 24703538 41 - TSS region transcription start site region 121807
Tssr118937 13 24706074 to 24706089 15 + TSS region transcription start site region 118937
Cpgi5383 13 24713639 to 24713921 282 CpG island CpG island 5383
Tssr118938 13 24721673 to 24721683 10 + TSS region transcription start site region 118938
Tssr118939 13 24721692 to 24721701 9 + TSS region transcription start site region 118939
Tssr118940 13 24722586 to 24722588 2 + TSS region transcription start site region 118940
Tssr118941 13 24729641 to 24729645 4 + TSS region transcription start site region 118941
Tssr118942 13 24741198 to 24741203 5 + TSS region transcription start site region 118942
Tssr118943 13 24741210 to 24741237 27 + TSS region transcription start site region 118943
Armh2 13 24741232 to 24746592 5360 + protein coding gene armadillo-like helical domain containing 2
Gmnn 13 24751845 to 24761923 10078 - protein coding gene geminin
Cpgi5384 13 24761185 to 24762213 1028 CpG island CpG island 5384
Tssr121808 13 24761443 to 24761458 15 - TSS region transcription start site region 121808
Tssr118944 13 24761550 to 24761594 44 + TSS region transcription start site region 118944
Tssr121809 13 24761875 to 24761950 75 - TSS region transcription start site region 121809
Tssr118945 13 24773100 to 24773104 4 + TSS region transcription start site region 118945
Cpgi5385 13 24799931 to 24800365 434 CpG island CpG island 5385
Cpgi5386 13 24800648 to 24802431 1783 CpG island CpG island 5386
Tssr121810 13 24800752 to 24800772 20 - TSS region transcription start site region 121810
Tssr121811 13 24800778 to 24800789 11 - TSS region transcription start site region 121811
Tssr118946 13 24801137 to 24801158 21 + TSS region transcription start site region 118946
Tssr118947 13 24801171 to 24801184 13 + TSS region transcription start site region 118947
Tssr118948 13 24801194 to 24801213 19 + TSS region transcription start site region 118948
Tssr118949 13 24801332 to 24801339 7 + TSS region transcription start site region 118949
BC005537 13 24801657 to 24812899 11242 + protein coding gene cDNA sequence BC005537
Tssr118950 13 24802857 to 24802867 10 + TSS region transcription start site region 118950
Tssr118951 13 24802869 to 24802893 24 + TSS region transcription start site region 118951
Tssr118952 13 24802957 to 24802972 15 + TSS region transcription start site region 118952
Tssr118953 13 24802991 to 24803008 17 + TSS region transcription start site region 118953
Tssr118954 13 24803018 to 24803035 17 + TSS region transcription start site region 118954
Tssr118955 13 24803351 to 24803367 16 + TSS region transcription start site region 118955
Tssr118956 13 24803701 to 24803713 12 + TSS region transcription start site region 118956
Tssr118957 13 24804909 to 24804929 20 + TSS region transcription start site region 118957
Tssr118958 13 24806927 to 24806932 5 + TSS region transcription start site region 118958
Gm22358 13 24811447 to 24811568 121 - snoRNA gene predicted gene, 22358
Tssr118959 13 24812711 to 24812722 11 + TSS region transcription start site region 118959
Tssr118960 13 24813336 to 24813352 16 + TSS region transcription start site region 118960
Tssr118961 13 24813398 to 24813451 53 + TSS region transcription start site region 118961
Tssr118962 13 24813454 to 24813487 33 + TSS region transcription start site region 118962
Tssr118963 13 24813492 to 24813505 13 + TSS region transcription start site region 118963
Tssr118964 13 24813506 to 24813522 16 + TSS region transcription start site region 118964
Tssr118965 13 24813533 to 24813544 11 + TSS region transcription start site region 118965
Tssr118966 13 24813554 to 24813570 16 + TSS region transcription start site region 118966