Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:23772879-24040009

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trim38 13 23778500 to 23791731 13231 + protein coding gene tripartite motif-containing 38
Tssr118866 13 23779262 to 23779271 9 + TSS region transcription start site region 118866
Tssr118867 13 23779282 to 23779294 12 + TSS region transcription start site region 118867
Gm11337 13 23794768 to 23804599 9831 - antisense lncRNA gene predicted gene 11337
Tssr118868 13 23806986 to 23807012 26 + TSS region transcription start site region 118868
Slc17a2 13 23806993 to 23825180 18187 + protein coding gene solute carrier family 17 (sodium phosphate), member 2
Tssr118869 13 23807029 to 23807063 34 + TSS region transcription start site region 118869
Tssr118870 13 23807065 to 23807077 12 + TSS region transcription start site region 118870
Tssr118871 13 23807095 to 23807102 7 + TSS region transcription start site region 118871
Tssr118872 13 23819868 to 23819870 2 + TSS region transcription start site region 118872
D13Mit1001 13 23829876 to 23830144 268 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1001
Tssr118873 13 23836897 to 23836910 13 + TSS region transcription start site region 118873
Tssr118874 13 23836926 to 23836961 35 + TSS region transcription start site region 118874
Tssr118875 13 23839401 to 23839442 41 + TSS region transcription start site region 118875
Slc17a3 13 23839434 to 23860716 21282 + protein coding gene solute carrier family 17 (sodium phosphate), member 3
Tssr118876 13 23839445 to 23839470 25 + TSS region transcription start site region 118876
Tssr118877 13 23839577 to 23839587 10 + TSS region transcription start site region 118877
Tssr118878 13 23839598 to 23839620 22 + TSS region transcription start site region 118878
Tssr4011 13 23839625 to 23839628 3 + TSS region transcription start site region 4011
Tssr4012 13 23839723 to 23839732 9 + TSS region transcription start site region 4012
Slc17a1 13 23867750 to 23895730 27980 + protein coding gene solute carrier family 17 (sodium phosphate), member 1
Tssr4013 13 23867983 to 23868013 30 + TSS region transcription start site region 4013
Tssr118879 13 23870259 to 23870266 7 + TSS region transcription start site region 118879
Tssr118880 13 23870284 to 23870308 24 + TSS region transcription start site region 118880
Tssr118881 13 23880882 to 23880884 2 + TSS region transcription start site region 118881
Tssr121757 13 23892664 to 23892709 45 - TSS region transcription start site region 121757
Tssr118882 13 23892807 to 23892818 11 + TSS region transcription start site region 118882
Slc17a4 13 23897879 to 23915009 17130 - protein coding gene solute carrier family 17 (sodium phosphate), member 4
Tssr121758 13 23914976 to 23914989 13 - TSS region transcription start site region 121758
Tssr121759 13 23914998 to 23915011 13 - TSS region transcription start site region 121759
Snrp1c-ps2 13 23923800 to 23924164 364 - pseudogene U1 small nuclear ribonucleoprotein 1C, pseudogene 2
Gm33516 13 23933086 to 23949115 16029 + lncRNA gene predicted gene, 33516
Hist1h2ba 13 23933773 to 23934156 383 - protein coding gene histone cluster 1, H2ba
Tssr121760 13 23934210 to 23934225 15 - TSS region transcription start site region 121760
Tssr118883 13 23934434 to 23934439 5 + TSS region transcription start site region 118883
Hist1h2aa 13 23934462 to 23934851 389 + protein coding gene histone cluster 1, H2aa
Cpgi5378 13 23934467 to 23934884 417 CpG island CpG island 5378
Gm44344 13 23934707 to 23934835 128 - miRNA gene predicted gene, 44344
Scgn 13 23953456 to 23991214 37758 - protein coding gene secretagogin, EF-hand calcium binding protein
Gm11339 13 23956809 to 23966175 9366 + antisense lncRNA gene predicted gene 11339
Tssr121761 13 23967138 to 23967145 7 - TSS region transcription start site region 121761
Tssr121762 13 23967155 to 23967179 24 - TSS region transcription start site region 121762
Tssr118884 13 23967281 to 23967287 6 + TSS region transcription start site region 118884
Cpgi5379 13 23990914 to 23991353 439 CpG island CpG island 5379
Tssr121763 13 23991158 to 23991181 23 - TSS region transcription start site region 121763
Carmil1 13 24012481 to 24280790 268309 - protein coding gene capping protein regulator and myosin 1 linker 1
Tssr4014 13 24024423 to 24024428 5 + TSS region transcription start site region 4014