Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 13:23739434-23960716

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83 genes found.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5372 13 23738570 to 23740062 1492 CpG island CpG island 5372
H1f2 13 23738807 to 23739531 724 + protein coding gene H1.2 linker histone, cluster member
Tssr118856 13 23739828 to 23739935 107 + TSS region transcription start site region 118856
Tssr118857 13 23740126 to 23740175 49 + TSS region transcription start site region 118857
Tssr118858 13 23742301 to 23742317 16 + TSS region transcription start site region 118858
H3c3 13 23745042 to 23745521 479 - protein coding gene H3 clustered histone 3
Tssr121743 13 23745511 to 23745526 15 - TSS region transcription start site region 121743
Cpgi5373 13 23746074 to 23746877 803 CpG island CpG island 5373
H2ac5-ps 13 23746166 to 23746499 333 - pseudogene H2A clustered histone 5, pseudogene
Gm44314 13 23746175 to 23746312 137 + miRNA gene predicted gene, 44314
Tssr121744 13 23746416 to 23746431 15 - TSS region transcription start site region 121744
Tssr121745 13 23746496 to 23746522 26 - TSS region transcription start site region 121745
Tssr121746 13 23746555 to 23746567 12 - TSS region transcription start site region 121746
H2bc3 13 23746734 to 23747223 489 + protein coding gene H2B clustered histone 3
Tssr118859 13 23746745 to 23746763 18 + TSS region transcription start site region 118859
Tssr118860 13 23751069 to 23751086 17 + TSS region transcription start site region 118860
Tssr118861 13 23751107 to 23751118 11 + TSS region transcription start site region 118861
H2ac4 13 23751126 to 23751598 472 + protein coding gene H2A clustered histone 4
Tssr118862 13 23751203 to 23751207 4 + TSS region transcription start site region 118862
Gm44484 13 23751378 to 23751515 137 - miRNA gene predicted gene, 44484
Cpgi5374 13 23751502 to 23751656 154 CpG island CpG island 5374
Tssr121747 13 23752195 to 23752210 15 - TSS region transcription start site region 121747
Tssr118863 13 23752341 to 23752351 10 + TSS region transcription start site region 118863
H3c2 13 23752345 to 23752840 495 + protein coding gene H3 clustered histone 2
4930558J22Rik 13 23755822 to 23757620 1798 - lncRNA gene RIKEN cDNA 4930558J22 gene
Cpgi5375 13 23756927 to 23757497 570 CpG island CpG island 5375
Tssr118864 13 23756984 to 23756995 11 + TSS region transcription start site region 118864
H4c2 13 23757013 to 23757409 396 + protein coding gene H4 clustered histone 2
Tssr121748 13 23757603 to 23757629 26 - TSS region transcription start site region 121748
Cpgi5376 13 23760679 to 23761974 1295 CpG island CpG island 5376
H4c1 13 23760795 to 23761249 454 - protein coding gene H4 clustered histone 1
Tssr121749 13 23761167 to 23761188 21 - TSS region transcription start site region 121749
Tssr121750 13 23761209 to 23761216 7 - TSS region transcription start site region 121750
Tssr121751 13 23761223 to 23761236 13 - TSS region transcription start site region 121751
H3c1 13 23761885 to 23762386 501 - protein coding gene H3 clustered histone 1
Tssr121752 13 23762362 to 23762364 2 - TSS region transcription start site region 121752
Tssr121753 13 23762378 to 23762391 13 - TSS region transcription start site region 121753
Tssr121754 13 23763502 to 23763514 12 - TSS region transcription start site region 121754
Cpgi5377 13 23763518 to 23764081 563 CpG island CpG island 5377
Tssr121755 13 23763519 to 23763543 24 - TSS region transcription start site region 121755
Tssr118865 13 23763660 to 23763674 14 + TSS region transcription start site region 118865
H1f1 13 23763666 to 23764406 740 + protein coding gene H1.1 linker histone, cluster member
Tssr121756 13 23764197 to 23764220 23 - TSS region transcription start site region 121756
Trim38 13 23778500 to 23791731 13231 + protein coding gene tripartite motif-containing 38
Tssr118866 13 23779262 to 23779271 9 + TSS region transcription start site region 118866
Tssr118867 13 23779282 to 23779294 12 + TSS region transcription start site region 118867
Gm11337 13 23794768 to 23804599 9831 - lncRNA gene predicted gene 11337
Tssr118868 13 23806986 to 23807012 26 + TSS region transcription start site region 118868
Slc17a2 13 23806993 to 23825180 18187 + protein coding gene solute carrier family 17 (sodium phosphate), member 2
Tssr118869 13 23807029 to 23807063 34 + TSS region transcription start site region 118869
Tssr118870 13 23807065 to 23807077 12 + TSS region transcription start site region 118870
Tssr118871 13 23807095 to 23807102 7 + TSS region transcription start site region 118871
Tssr118872 13 23819868 to 23819870 2 + TSS region transcription start site region 118872
D13Mit1001 13 23829876 to 23830144 268 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1001
Tssr118873 13 23836897 to 23836910 13 + TSS region transcription start site region 118873
Tssr118874 13 23836926 to 23836961 35 + TSS region transcription start site region 118874
Tssr118875 13 23839401 to 23839442 41 + TSS region transcription start site region 118875
Slc17a3 13 23839434 to 23860716 21282 + protein coding gene solute carrier family 17 (sodium phosphate), member 3
Tssr118876 13 23839445 to 23839470 25 + TSS region transcription start site region 118876
Tssr118877 13 23839577 to 23839587 10 + TSS region transcription start site region 118877
Tssr118878 13 23839598 to 23839620 22 + TSS region transcription start site region 118878
Tssr4011 13 23839625 to 23839628 3 + TSS region transcription start site region 4011
Tssr4012 13 23839723 to 23839732 9 + TSS region transcription start site region 4012
Slc17a1 13 23867750 to 23895730 27980 + protein coding gene solute carrier family 17 (sodium phosphate), member 1
Tssr4013 13 23867983 to 23868013 30 + TSS region transcription start site region 4013
Tssr118879 13 23870259 to 23870266 7 + TSS region transcription start site region 118879
Tssr118880 13 23870284 to 23870308 24 + TSS region transcription start site region 118880
Tssr118881 13 23880882 to 23880884 2 + TSS region transcription start site region 118881
Tssr121757 13 23892664 to 23892709 45 - TSS region transcription start site region 121757
Tssr118882 13 23892807 to 23892818 11 + TSS region transcription start site region 118882
Slc17a4 13 23897879 to 23915009 17130 - protein coding gene solute carrier family 17 (sodium phosphate), member 4
Tssr121758 13 23914976 to 23914989 13 - TSS region transcription start site region 121758
Tssr121759 13 23914998 to 23915011 13 - TSS region transcription start site region 121759
Snrp1c-ps2 13 23923800 to 23924164 364 - pseudogene U1 small nuclear ribonucleoprotein 1C, pseudogene 2
Gm33516 13 23933437 to 23949115 15678 + lncRNA gene predicted gene, 33516
H2bc1 13 23933773 to 23934156 383 - protein coding gene H2B clustered histone 1
Tssr121760 13 23934210 to 23934225 15 - TSS region transcription start site region 121760
Tssr118883 13 23934434 to 23934439 5 + TSS region transcription start site region 118883
H2ac1 13 23934462 to 23934851 389 + protein coding gene H2A clustered histone 1
Cpgi5378 13 23934467 to 23934884 417 CpG island CpG island 5378
Gm44344 13 23934707 to 23934835 128 - miRNA gene predicted gene, 44344
Scgn 13 23953456 to 23991214 37758 - protein coding gene secretagogin, EF-hand calcium binding protein
Gm11339 13 23956809 to 23966175 9366 + lncRNA gene predicted gene 11339