Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:23576171-25256180

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384 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hist1h3d 13 23575763 to 23576266 503 + protein coding gene histone cluster 1, H3d
Tssr118840 13 23578333 to 23578337 4 + TSS region transcription start site region 118840
Cpgi5365 13 23581540 to 23582004 464 CpG island CpG island 5365
Tssr118841 13 23581563 to 23581569 6 + TSS region transcription start site region 118841
Hist1h4d 13 23581602 to 23581969 367 + protein coding gene histone cluster 1, H4d
Hist1h2be 13 23583670 to 23621124 37454 - protein coding gene histone cluster 1, H2be
Cpgi5366 13 23585015 to 23585525 510 CpG island CpG island 5366
Tssr121726 13 23585970 to 23585981 11 - TSS region transcription start site region 121726
Tssr121727 13 23585983 to 23585995 12 - TSS region transcription start site region 121727
Gm33387 13 23591186 to 23606239 15053 + lncRNA gene predicted gene, 33387
Tssr118842 13 23591479 to 23591529 50 + TSS region transcription start site region 118842
Gm11398 13 23620730 to 23621049 319 - pseudogene predicted gene 11398
Tssr121728 13 23621090 to 23621115 25 - TSS region transcription start site region 121728
Cpgi5367 13 23621282 to 23621458 176 CpG island CpG island 5367
Hist1h1e 13 23621777 to 23622558 781 - protein coding gene histone cluster 1, H1e
Tssr118843 13 23621851 to 23621872 21 + TSS region transcription start site region 118843
Tssr121729 13 23621889 to 23621931 42 - TSS region transcription start site region 121729
Tssr121730 13 23621937 to 23621989 52 - TSS region transcription start site region 121730
Tssr121731 13 23621990 to 23622003 13 - TSS region transcription start site region 121731
Tssr118844 13 23621995 to 23622051 56 + TSS region transcription start site region 118844
Tssr121732 13 23622017 to 23622106 89 - TSS region transcription start site region 121732
Cpgi5368 13 23622033 to 23622744 711 CpG island CpG island 5368
Tssr121733 13 23622548 to 23622563 15 - TSS region transcription start site region 121733
Tssr118845 13 23652436 to 23652447 11 + TSS region transcription start site region 118845
Gm22452 13 23663021 to 23663124 103 + snRNA gene predicted gene, 22452
Gm24991 13 23682545 to 23682652 107 - rRNA gene predicted gene, 24991
Hist1h2ac 13 23683473 to 23683959 486 - protein coding gene histone cluster 1, H2ac
Gm44350 13 23683535 to 23683672 137 + miRNA gene predicted gene, 44350
Cpgi5369 13 23683908 to 23684247 339 CpG island CpG island 5369
Tssr121734 13 23683941 to 23683967 26 - TSS region transcription start site region 121734
Tssr118846 13 23684192 to 23684208 16 + TSS region transcription start site region 118846
Hist1h2bc 13 23684199 to 23692480 8281 + protein coding gene histone cluster 1, H2bc
Tssr121735 13 23684618 to 23684648 30 - TSS region transcription start site region 121735
Tssr118847 13 23685795 to 23685809 14 + TSS region transcription start site region 118847
Tssr118848 13 23692091 to 23692118 27 + TSS region transcription start site region 118848
Tssr118849 13 23695791 to 23695817 26 + TSS region transcription start site region 118849
Hist1h1t 13 23695811 to 23696545 734 + protein coding gene histone cluster 1, H1t
Tssr118850 13 23695823 to 23695833 10 + TSS region transcription start site region 118850
Cpgi5370 13 23698000 to 23698538 538 CpG island CpG island 5370
Hist1h4c 13 23698084 to 23698458 374 - protein coding gene histone cluster 1, H4c
Tssr121736 13 23698455 to 23698460 5 - TSS region transcription start site region 121736
Hfe 13 23702730 to 23710986 8256 - protein coding gene homeostatic iron regulator
Tssr121737 13 23704324 to 23704334 10 - TSS region transcription start site region 121737
Tssr121738 13 23706041 to 23706063 22 - TSS region transcription start site region 121738
Tssr4009 13 23706098 to 23706114 16 - TSS region transcription start site region 4009
Cpgi5371 13 23710536 to 23710779 243 CpG island CpG island 5371
Tssr118851 13 23710626 to 23710640 14 + TSS region transcription start site region 118851
Tssr118852 13 23710648 to 23710668 20 + TSS region transcription start site region 118852
Tssr121739 13 23710785 to 23710829 44 - TSS region transcription start site region 121739
Tssr121740 13 23710845 to 23710892 47 - TSS region transcription start site region 121740
Tssr121741 13 23710897 to 23710920 23 - TSS region transcription start site region 121741
Tssr4010 13 23710922 to 23710931 9 - TSS region transcription start site region 4010
Gm11338 13 23728727 to 23730103 1376 + pseudogene predicted gene 11338
Tssr121742 13 23729067 to 23729088 21 - TSS region transcription start site region 121742
Tssr118853 13 23735152 to 23735183 31 + TSS region transcription start site region 118853
Cpgi5372 13 23738570 to 23740062 1492 CpG island CpG island 5372
Tssr118854 13 23738804 to 23738809 5 + TSS region transcription start site region 118854
Hist1h1c 13 23738807 to 23739531 724 + protein coding gene histone cluster 1, H1c
Tssr118855 13 23739190 to 23739198 8 + TSS region transcription start site region 118855
Tssr118856 13 23739828 to 23739935 107 + TSS region transcription start site region 118856
Tssr118857 13 23740126 to 23740175 49 + TSS region transcription start site region 118857
Tssr118858 13 23742301 to 23742317 16 + TSS region transcription start site region 118858
Hist1h3c 13 23745042 to 23745521 479 - protein coding gene histone cluster 1, H3c
Tssr121743 13 23745511 to 23745526 15 - TSS region transcription start site region 121743
Cpgi5373 13 23746074 to 23746877 803 CpG island CpG island 5373
Gm11336 13 23746166 to 23746499 333 - pseudogene predicted gene 11336
Gm44314 13 23746175 to 23746312 137 + miRNA gene predicted gene, 44314
Tssr121744 13 23746416 to 23746431 15 - TSS region transcription start site region 121744
Tssr121745 13 23746496 to 23746522 26 - TSS region transcription start site region 121745
Tssr121746 13 23746555 to 23746567 12 - TSS region transcription start site region 121746
Hist1h2bb 13 23746734 to 23747223 489 + protein coding gene histone cluster 1, H2bb
Tssr118859 13 23746745 to 23746763 18 + TSS region transcription start site region 118859
Tssr118860 13 23751069 to 23751086 17 + TSS region transcription start site region 118860
Tssr118861 13 23751107 to 23751118 11 + TSS region transcription start site region 118861
Hist1h2ab 13 23751126 to 23751598 472 + protein coding gene histone cluster 1, H2ab
Tssr118862 13 23751203 to 23751207 4 + TSS region transcription start site region 118862
Gm44484 13 23751378 to 23751515 137 - miRNA gene predicted gene, 44484
Cpgi5374 13 23751502 to 23751656 154 CpG island CpG island 5374
Tssr121747 13 23752195 to 23752210 15 - TSS region transcription start site region 121747
Tssr118863 13 23752341 to 23752351 10 + TSS region transcription start site region 118863
Hist1h3b 13 23752380 to 23752840 460 + protein coding gene histone cluster 1, H3b
4930558J22Rik 13 23755822 to 23757620 1798 - antisense lncRNA gene RIKEN cDNA 4930558J22 gene
Cpgi5375 13 23756927 to 23757497 570 CpG island CpG island 5375
Tssr118864 13 23756984 to 23756995 11 + TSS region transcription start site region 118864
Hist1h4b 13 23757013 to 23757409 396 + protein coding gene histone cluster 1, H4b
Tssr121748 13 23757603 to 23757629 26 - TSS region transcription start site region 121748
Cpgi5376 13 23760679 to 23761974 1295 CpG island CpG island 5376
Hist1h4a 13 23760795 to 23761249 454 - protein coding gene histone cluster 1, H4a
Tssr121749 13 23761167 to 23761188 21 - TSS region transcription start site region 121749
Tssr121750 13 23761209 to 23761216 7 - TSS region transcription start site region 121750
Tssr121751 13 23761223 to 23761236 13 - TSS region transcription start site region 121751
Hist1h3a 13 23761885 to 23762386 501 - protein coding gene histone cluster 1, H3a
Tssr121752 13 23762362 to 23762364 2 - TSS region transcription start site region 121752
Tssr121753 13 23762378 to 23762391 13 - TSS region transcription start site region 121753
Tssr121754 13 23763502 to 23763514 12 - TSS region transcription start site region 121754
Cpgi5377 13 23763518 to 23764081 563 CpG island CpG island 5377
Tssr121755 13 23763519 to 23763543 24 - TSS region transcription start site region 121755
Tssr118865 13 23763660 to 23763674 14 + TSS region transcription start site region 118865
Hist1h1a 13 23763666 to 23764406 740 + protein coding gene histone cluster 1, H1a
Tssr121756 13 23764197 to 23764220 23 - TSS region transcription start site region 121756
Trim38 13 23778500 to 23791731 13231 + protein coding gene tripartite motif-containing 38
Tssr118866 13 23779262 to 23779271 9 + TSS region transcription start site region 118866
Tssr118867 13 23779282 to 23779294 12 + TSS region transcription start site region 118867
Gm11337 13 23794768 to 23804599 9831 - antisense lncRNA gene predicted gene 11337
Tssr118868 13 23806986 to 23807012 26 + TSS region transcription start site region 118868
Slc17a2 13 23806993 to 23825180 18187 + protein coding gene solute carrier family 17 (sodium phosphate), member 2
Tssr118869 13 23807029 to 23807063 34 + TSS region transcription start site region 118869
Tssr118870 13 23807065 to 23807077 12 + TSS region transcription start site region 118870
Tssr118871 13 23807095 to 23807102 7 + TSS region transcription start site region 118871
Tssr118872 13 23819868 to 23819870 2 + TSS region transcription start site region 118872
D13Mit1001 13 23829876 to 23830144 268 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 1001
Tssr118873 13 23836897 to 23836910 13 + TSS region transcription start site region 118873
Tssr118874 13 23836926 to 23836961 35 + TSS region transcription start site region 118874
Tssr118875 13 23839401 to 23839442 41 + TSS region transcription start site region 118875
Slc17a3 13 23839434 to 23860716 21282 + protein coding gene solute carrier family 17 (sodium phosphate), member 3
Tssr118876 13 23839445 to 23839470 25 + TSS region transcription start site region 118876
Tssr118877 13 23839577 to 23839587 10 + TSS region transcription start site region 118877
Tssr118878 13 23839598 to 23839620 22 + TSS region transcription start site region 118878
Tssr4011 13 23839625 to 23839628 3 + TSS region transcription start site region 4011
Tssr4012 13 23839723 to 23839732 9 + TSS region transcription start site region 4012
Slc17a1 13 23867750 to 23895730 27980 + protein coding gene solute carrier family 17 (sodium phosphate), member 1
Tssr4013 13 23867983 to 23868013 30 + TSS region transcription start site region 4013
Tssr118879 13 23870259 to 23870266 7 + TSS region transcription start site region 118879
Tssr118880 13 23870284 to 23870308 24 + TSS region transcription start site region 118880
Tssr118881 13 23880882 to 23880884 2 + TSS region transcription start site region 118881
Tssr121757 13 23892664 to 23892709 45 - TSS region transcription start site region 121757
Tssr118882 13 23892807 to 23892818 11 + TSS region transcription start site region 118882
Slc17a4 13 23897879 to 23915009 17130 - protein coding gene solute carrier family 17 (sodium phosphate), member 4
Tssr121758 13 23914976 to 23914989 13 - TSS region transcription start site region 121758
Tssr121759 13 23914998 to 23915011 13 - TSS region transcription start site region 121759
Snrp1c-ps2 13 23923800 to 23924164 364 - pseudogene U1 small nuclear ribonucleoprotein 1C, pseudogene 2
Gm33516 13 23933086 to 23949115 16029 + lncRNA gene predicted gene, 33516
Hist1h2ba 13 23933773 to 23934156 383 - protein coding gene histone cluster 1, H2ba
Tssr121760 13 23934210 to 23934225 15 - TSS region transcription start site region 121760
Tssr118883 13 23934434 to 23934439 5 + TSS region transcription start site region 118883
Hist1h2aa 13 23934462 to 23934851 389 + protein coding gene histone cluster 1, H2aa
Cpgi5378 13 23934467 to 23934884 417 CpG island CpG island 5378
Gm44344 13 23934707 to 23934835 128 - miRNA gene predicted gene, 44344
Scgn 13 23953456 to 23991214 37758 - protein coding gene secretagogin, EF-hand calcium binding protein
Gm11339 13 23956809 to 23966175 9366 + antisense lncRNA gene predicted gene 11339
Tssr121761 13 23967138 to 23967145 7 - TSS region transcription start site region 121761
Tssr121762 13 23967155 to 23967179 24 - TSS region transcription start site region 121762
Tssr118884 13 23967281 to 23967287 6 + TSS region transcription start site region 118884
Cpgi5379 13 23990914 to 23991353 439 CpG island CpG island 5379
Tssr121763 13 23991158 to 23991181 23 - TSS region transcription start site region 121763
Carmil1 13 24012481 to 24280790 268309 - protein coding gene capping protein regulator and myosin 1 linker 1
Tssr4014 13 24024423 to 24024428 5 + TSS region transcription start site region 4014
D13Ertd224e 13 24057899 to 24058110 211 DNA segment DNA segment, Chr 13, ERATO Doi 224, expressed
Tssr121764 13 24059289 to 24059313 24 - TSS region transcription start site region 121764
Tssr121765 13 24059320 to 24059324 4 - TSS region transcription start site region 121765
4933427I18Rik 13 24059424 to 24067677 8253 protein coding gene RIKEN cDNA 4933427I18 gene
Tssr121766 13 24094464 to 24094539 75 - TSS region transcription start site region 121766
Tssr118885 13 24104298 to 24104342 44 + TSS region transcription start site region 118885
Tssr118886 13 24104364 to 24104373 9 + TSS region transcription start site region 118886
Tssr118887 13 24105566 to 24105579 13 + TSS region transcription start site region 118887
Tssr118888 13 24105602 to 24105613 11 + TSS region transcription start site region 118888
Tssr121767 13 24135084 to 24135097 13 - TSS region transcription start site region 121767
Tssr121768 13 24155203 to 24155216 13 - TSS region transcription start site region 121768
Tssr118889 13 24159913 to 24159922 9 + TSS region transcription start site region 118889
Tssr121769 13 24178249 to 24178253 4 - TSS region transcription start site region 121769
Gm33573 13 24178265 to 24189252 10987 + lncRNA gene predicted gene, 33573
Gm11343 13 24195897 to 24196495 598 + pseudogene predicted gene 11343
Tssr121770 13 24206237 to 24206254 17 - TSS region transcription start site region 121770
Tssr121771 13 24206260 to 24206269 9 - TSS region transcription start site region 121771
Tssr121772 13 24206281 to 24206295 14 - TSS region transcription start site region 121772
Tssr121773 13 24222145 to 24222148 3 - TSS region transcription start site region 121773
Tssr121774 13 24257801 to 24257804 3 - TSS region transcription start site region 121774
Tssr121775 13 24272856 to 24272860 4 - TSS region transcription start site region 121775
Cpgi5380 13 24279993 to 24281559 1566 CpG island CpG island 5380
Tssr121776 13 24280765 to 24280778 13 - TSS region transcription start site region 121776
Tssr121777 13 24280948 to 24280995 47 - TSS region transcription start site region 121777
Tssr121778 13 24281224 to 24281277 53 - TSS region transcription start site region 121778
Tssr121779 13 24281292 to 24281325 33 - TSS region transcription start site region 121779
Gm11340 13 24291394 to 24291805 411 - pseudogene predicted gene 11340
Gm23340 13 24316730 to 24316852 122 - snoRNA gene predicted gene, 23340
Gm11341 13 24320302 to 24320748 446 + pseudogene predicted gene 11341
Gm11342 13 24324108 to 24371760 47652 - antisense lncRNA gene predicted gene 11342
Tssr4015 13 24327251 to 24327271 20 + TSS region transcription start site region 4015
Cmah 13 24327404 to 24477289 149885 + protein coding gene cytidine monophospho-N-acetylneuraminic acid hydroxylase
Tssr118890 13 24327415 to 24327461 46 + TSS region transcription start site region 118890
Tssr121780 13 24329023 to 24329035 12 - TSS region transcription start site region 121780
Tssr121781 13 24329045 to 24329052 7 - TSS region transcription start site region 121781
Tssr121782 13 24329124 to 24329147 23 - TSS region transcription start site region 121782
Tssr121783 13 24330205 to 24330218 13 - TSS region transcription start site region 121783
Tssr118891 13 24373511 to 24373517 6 + TSS region transcription start site region 118891
Tssr121784 13 24375942 to 24375959 17 - TSS region transcription start site region 121784
Tssr121785 13 24375962 to 24375972 10 - TSS region transcription start site region 121785
Tssr121786 13 24376022 to 24376033 11 - TSS region transcription start site region 121786
Tssr118892 13 24376034 to 24376045 11 + TSS region transcription start site region 118892
Tssr4016 13 24376050 to 24376061 11 + TSS region transcription start site region 4016
Tssr118893 13 24376070 to 24376109 39 + TSS region transcription start site region 118893
Tssr118894 13 24376134 to 24376145 11 + TSS region transcription start site region 118894
Tssr118895 13 24376168 to 24376197 29 + TSS region transcription start site region 118895
Tssr121787 13 24384019 to 24384061 42 - TSS region transcription start site region 121787
Tssr121788 13 24391655 to 24391657 2 - TSS region transcription start site region 121788
Tssr118896 13 24395256 to 24395279 23 + TSS region transcription start site region 118896
Tssr118897 13 24397380 to 24397391 11 + TSS region transcription start site region 118897
Tssr118898 13 24397411 to 24397422 11 + TSS region transcription start site region 118898
Tssr118899 13 24397426 to 24397436 10 + TSS region transcription start site region 118899
D13Mit15 13 24399952 to 24400094 142 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 15