Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:23552436-23752447

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111 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5362 13 23554913 to 23555762 849 CpG island CpG island 5362
Tssr118832 13 23555023 to 23555039 16 + TSS region transcription start site region 118832
Hist1h1d 13 23555032 to 23555807 775 + protein coding gene histone cluster 1, H1d
Tssr121716 13 23555551 to 23555585 34 - TSS region transcription start site region 121716
Tssr118833 13 23555616 to 23555633 17 + TSS region transcription start site region 118833
Tssr121717 13 23556114 to 23556123 9 - TSS region transcription start site region 121717
Hist1h3e 13 23561896 to 23562365 469 - protein coding gene histone cluster 1, H3e
Cpgi5363 13 23561942 to 23562631 689 CpG island CpG island 5363
Tssr121718 13 23562376 to 23562392 16 - TSS region transcription start site region 121718
Tssr118834 13 23562585 to 23562641 56 + TSS region transcription start site region 118834
Hist1h2ae 13 23570663 to 23571220 557 - protein coding gene histone cluster 1, H2ae
Gm44394 13 23570726 to 23570863 137 + miRNA gene predicted gene, 44394
Tssr121719 13 23571034 to 23571056 22 - TSS region transcription start site region 121719
Tssr4008 13 23571111 to 23571112 1 - TSS region transcription start site region 4008
Tssr121720 13 23571116 to 23571125 9 - TSS region transcription start site region 121720
Tssr121721 13 23571131 to 23571141 10 - TSS region transcription start site region 121721
Tssr121722 13 23571151 to 23571170 19 - TSS region transcription start site region 121722
Tssr121723 13 23571186 to 23571189 3 - TSS region transcription start site region 121723
Tssr121724 13 23571200 to 23571208 8 - TSS region transcription start site region 121724
Tssr118835 13 23571382 to 23571392 10 + TSS region transcription start site region 118835
Hist1h2bg 13 23571400 to 23571863 463 + protein coding gene histone cluster 1, H2bg
Tssr118836 13 23571846 to 23571855 9 + TSS region transcription start site region 118836
Hist1h2bf 13 23573760 to 23574190 430 - protein coding gene histone cluster 1, H2bf
Cpgi5364 13 23574181 to 23574482 301 CpG island CpG island 5364
Tssr121725 13 23574199 to 23574229 30 - TSS region transcription start site region 121725
Hist1h2ad 13 23574381 to 23574915 534 + protein coding gene histone cluster 1, H2ad
Tssr118837 13 23574434 to 23574449 15 + TSS region transcription start site region 118837
Gm44359 13 23574716 to 23574853 137 - miRNA gene predicted gene, 44359
Tssr118838 13 23575753 to 23575773 20 + TSS region transcription start site region 118838
Hist1h3d 13 23575763 to 23576266 503 + protein coding gene histone cluster 1, H3d
Tssr118839 13 23575782 to 23575793 11 + TSS region transcription start site region 118839
Tssr118840 13 23578333 to 23578337 4 + TSS region transcription start site region 118840
Cpgi5365 13 23581540 to 23582004 464 CpG island CpG island 5365
Tssr118841 13 23581563 to 23581569 6 + TSS region transcription start site region 118841
Hist1h4d 13 23581602 to 23581969 367 + protein coding gene histone cluster 1, H4d
Hist1h2be 13 23583670 to 23621124 37454 - protein coding gene histone cluster 1, H2be
Cpgi5366 13 23585015 to 23585525 510 CpG island CpG island 5366
Tssr121726 13 23585970 to 23585981 11 - TSS region transcription start site region 121726
Tssr121727 13 23585983 to 23585995 12 - TSS region transcription start site region 121727
Gm33387 13 23591186 to 23606239 15053 + lncRNA gene predicted gene, 33387
Tssr118842 13 23591479 to 23591529 50 + TSS region transcription start site region 118842
Gm11398 13 23620730 to 23621049 319 - pseudogene predicted gene 11398
Tssr121728 13 23621090 to 23621115 25 - TSS region transcription start site region 121728
Cpgi5367 13 23621282 to 23621458 176 CpG island CpG island 5367
Hist1h1e 13 23621777 to 23622558 781 - protein coding gene histone cluster 1, H1e
Tssr118843 13 23621851 to 23621872 21 + TSS region transcription start site region 118843
Tssr121729 13 23621889 to 23621931 42 - TSS region transcription start site region 121729
Tssr121730 13 23621937 to 23621989 52 - TSS region transcription start site region 121730
Tssr121731 13 23621990 to 23622003 13 - TSS region transcription start site region 121731
Tssr118844 13 23621995 to 23622051 56 + TSS region transcription start site region 118844
Tssr121732 13 23622017 to 23622106 89 - TSS region transcription start site region 121732
Cpgi5368 13 23622033 to 23622744 711 CpG island CpG island 5368
Tssr121733 13 23622548 to 23622563 15 - TSS region transcription start site region 121733
Tssr118845 13 23652436 to 23652447 11 + TSS region transcription start site region 118845
Gm22452 13 23663021 to 23663124 103 + snRNA gene predicted gene, 22452
Gm24991 13 23682545 to 23682652 107 - rRNA gene predicted gene, 24991
Hist1h2ac 13 23683473 to 23683959 486 - protein coding gene histone cluster 1, H2ac
Gm44350 13 23683535 to 23683672 137 + miRNA gene predicted gene, 44350
Cpgi5369 13 23683908 to 23684247 339 CpG island CpG island 5369
Tssr121734 13 23683941 to 23683967 26 - TSS region transcription start site region 121734
Tssr118846 13 23684192 to 23684208 16 + TSS region transcription start site region 118846
Hist1h2bc 13 23684199 to 23692480 8281 + protein coding gene histone cluster 1, H2bc
Tssr121735 13 23684618 to 23684648 30 - TSS region transcription start site region 121735
Tssr118847 13 23685795 to 23685809 14 + TSS region transcription start site region 118847
Tssr118848 13 23692091 to 23692118 27 + TSS region transcription start site region 118848
Tssr118849 13 23695791 to 23695817 26 + TSS region transcription start site region 118849
Hist1h1t 13 23695811 to 23696545 734 + protein coding gene histone cluster 1, H1t
Tssr118850 13 23695823 to 23695833 10 + TSS region transcription start site region 118850
Cpgi5370 13 23698000 to 23698538 538 CpG island CpG island 5370
Hist1h4c 13 23698084 to 23698458 374 - protein coding gene histone cluster 1, H4c
Tssr121736 13 23698455 to 23698460 5 - TSS region transcription start site region 121736
Hfe 13 23702730 to 23710986 8256 - protein coding gene homeostatic iron regulator
Tssr121737 13 23704324 to 23704334 10 - TSS region transcription start site region 121737
Tssr121738 13 23706041 to 23706063 22 - TSS region transcription start site region 121738
Tssr4009 13 23706098 to 23706114 16 - TSS region transcription start site region 4009
Cpgi5371 13 23710536 to 23710779 243 CpG island CpG island 5371
Tssr118851 13 23710626 to 23710640 14 + TSS region transcription start site region 118851
Tssr118852 13 23710648 to 23710668 20 + TSS region transcription start site region 118852
Tssr121739 13 23710785 to 23710829 44 - TSS region transcription start site region 121739
Tssr121740 13 23710845 to 23710892 47 - TSS region transcription start site region 121740
Tssr121741 13 23710897 to 23710920 23 - TSS region transcription start site region 121741
Tssr4010 13 23710922 to 23710931 9 - TSS region transcription start site region 4010
Gm11338 13 23728727 to 23730103 1376 + pseudogene predicted gene 11338
Tssr121742 13 23729067 to 23729088 21 - TSS region transcription start site region 121742
Tssr118853 13 23735152 to 23735183 31 + TSS region transcription start site region 118853
Cpgi5372 13 23738570 to 23740062 1492 CpG island CpG island 5372
Tssr118854 13 23738804 to 23738809 5 + TSS region transcription start site region 118854
Hist1h1c 13 23738807 to 23739531 724 + protein coding gene histone cluster 1, H1c
Tssr118855 13 23739190 to 23739198 8 + TSS region transcription start site region 118855
Tssr118856 13 23739828 to 23739935 107 + TSS region transcription start site region 118856
Tssr118857 13 23740126 to 23740175 49 + TSS region transcription start site region 118857
Tssr118858 13 23742301 to 23742317 16 + TSS region transcription start site region 118858
Hist1h3c 13 23745042 to 23745521 479 - protein coding gene histone cluster 1, H3c
Tssr121743 13 23745511 to 23745526 15 - TSS region transcription start site region 121743
Cpgi5373 13 23746074 to 23746877 803 CpG island CpG island 5373
Gm11336 13 23746166 to 23746499 333 - pseudogene predicted gene 11336
Gm44314 13 23746175 to 23746312 137 + miRNA gene predicted gene, 44314
Tssr121744 13 23746416 to 23746431 15 - TSS region transcription start site region 121744
Tssr121745 13 23746496 to 23746522 26 - TSS region transcription start site region 121745
Tssr121746 13 23746555 to 23746567 12 - TSS region transcription start site region 121746
Hist1h2bb 13 23746734 to 23747223 489 + protein coding gene histone cluster 1, H2bb
Tssr118859 13 23746745 to 23746763 18 + TSS region transcription start site region 118859
Tssr118860 13 23751069 to 23751086 17 + TSS region transcription start site region 118860
Tssr118861 13 23751107 to 23751118 11 + TSS region transcription start site region 118861
Hist1h2ab 13 23751126 to 23751598 472 + protein coding gene histone cluster 1, H2ab
Tssr118862 13 23751203 to 23751207 4 + TSS region transcription start site region 118862
Gm44484 13 23751378 to 23751515 137 - miRNA gene predicted gene, 44484
Cpgi5374 13 23751502 to 23751656 154 CpG island CpG island 5374
Tssr121747 13 23752195 to 23752210 15 - TSS region transcription start site region 121747
Tssr118863 13 23752341 to 23752351 10 + TSS region transcription start site region 118863
Hist1h3b 13 23752380 to 23752840 460 + protein coding gene histone cluster 1, H3b