Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:23493906-23574304

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
n-TWcca3 13 23498106 to 23498177 71 + tRNA gene nuclear encoded tRNA trytophan 3 (anticodon CCA)
n-TMcat5 13 23500080 to 23500151 71 + tRNA gene nuclear encoded tRNA methionine 5 (anticodon CAT)
n-TRacg4 13 23500522 to 23500594 72 - tRNA gene nuclear encoded tRNA arginine 4 (anticodon ACG)
n-TSaga7 13 23500957 to 23501038 81 - tRNA gene nuclear encoded tRNA serine 7 (anticodon AGA)
n-TRtcg3 13 23503980 to 23504052 72 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon TCG)
n-TWcca4 13 23506519 to 23506590 71 + tRNA gene nuclear encoded tRNA trytophan 4 (anticodon CCA)
n-TGgcc6 13 23517203 to 23517273 70 + tRNA gene nuclear encoded tRNA glycine 6 (anticodon GCC)
n-TMcat6 13 23517692 to 23517763 71 + tRNA gene nuclear encoded tRNA methionine 6 (anticodon CAT)
Cpgi5357 13 23518138 to 23518289 151 CpG island CpG island 5357
n-TStga1 13 23518146 to 23518227 81 + tRNA gene nuclear encoded tRNA serine 1 (anticodon TGA)
n-TQttg4 13 23519050 to 23519121 71 + tRNA gene nuclear encoded tRNA glutamine 4 (anticodon TTG)
n-TQttg5 13 23519613 to 23519684 71 + tRNA gene nuclear encoded tRNA glutamine 5 (anticodon TTG)
n-TSgct4 13 23521870 to 23521951 81 + tRNA gene nuclear encoded tRNA serine 4 (anticodon GCT)
n-TRtcg1 13 23526456 to 23526528 72 - tRNA gene nuclear encoded tRNA arginine 1 (anticodon TCG)
Gm11335 13 23527011 to 23530943 3932 - lincRNA gene predicted gene 11335
n-TMcat9 13 23530348 to 23530419 71 - tRNA gene nuclear encoded tRNA methionine 9 (anticodon CAT)
Cpgi5358 13 23530896 to 23531874 978 CpG island CpG island 5358
Tssr121710 13 23530917 to 23530943 26 - TSS region transcription start site region 121710
Tssr121711 13 23530947 to 23530966 19 - TSS region transcription start site region 121711
Hist1h4h 13 23531044 to 23531478 434 + protein coding gene histone cluster 1, H4h
Tssr118826 13 23531083 to 23531088 5 + TSS region transcription start site region 118826
Tssr118827 13 23531842 to 23531853 11 + TSS region transcription start site region 118827
Tssr121712 13 23533656 to 23533661 5 - TSS region transcription start site region 121712
Tssr4007 13 23533685 to 23533705 20 - TSS region transcription start site region 4007
Tssr118828 13 23533869 to 23533882 13 + TSS region transcription start site region 118828
Hist1h2af 13 23533906 to 23534304 398 + protein coding gene histone cluster 1, H2af
Gm44297 13 23534114 to 23534254 140 - miRNA gene predicted gene, 44297
Cpgi5359 13 23535157 to 23535473 316 CpG island CpG island 5359
Tssr121713 13 23535165 to 23535219 54 - TSS region transcription start site region 121713
Tssr118829 13 23535411 to 23535427 16 + TSS region transcription start site region 118829
Hist1h3g 13 23535418 to 23535909 491 + protein coding gene histone cluster 1, H3g
Hist1h2bh 13 23542923 to 23543444 521 - protein coding gene histone cluster 1, H2bh
Cpgi5360 13 23543342 to 23543549 207 CpG island CpG island 5360
Tssr121714 13 23543383 to 23543402 19 - TSS region transcription start site region 121714
Hist1h3f 13 23544052 to 23544954 902 + protein coding gene histone cluster 1, H3f
Tssr118830 13 23544458 to 23544476 18 + TSS region transcription start site region 118830
Cpgi5361 13 23551234 to 23551791 557 CpG island CpG island 5361
Hist1h4f 13 23551286 to 23551643 357 - protein coding gene histone cluster 1, H4f
Tssr121715 13 23551662 to 23551672 10 - TSS region transcription start site region 121715
Tssr118831 13 23551830 to 23551863 33 + TSS region transcription start site region 118831
Cpgi5362 13 23554913 to 23555762 849 CpG island CpG island 5362
Tssr118832 13 23555023 to 23555039 16 + TSS region transcription start site region 118832
Hist1h1d 13 23555032 to 23555807 775 + protein coding gene histone cluster 1, H1d
Tssr121716 13 23555551 to 23555585 34 - TSS region transcription start site region 121716
Tssr118833 13 23555616 to 23555633 17 + TSS region transcription start site region 118833
Tssr121717 13 23556114 to 23556123 9 - TSS region transcription start site region 121717
Hist1h3e 13 23561896 to 23562365 469 - protein coding gene histone cluster 1, H3e
Cpgi5363 13 23561942 to 23562631 689 CpG island CpG island 5363
Tssr121718 13 23562376 to 23562392 16 - TSS region transcription start site region 121718
Tssr118834 13 23562585 to 23562641 56 + TSS region transcription start site region 118834
Hist1h2ae 13 23570663 to 23571220 557 - protein coding gene histone cluster 1, H2ae
Gm44394 13 23570726 to 23570863 137 + miRNA gene predicted gene, 44394
Tssr121719 13 23571034 to 23571056 22 - TSS region transcription start site region 121719
Tssr4008 13 23571111 to 23571112 1 - TSS region transcription start site region 4008
Tssr121720 13 23571116 to 23571125 9 - TSS region transcription start site region 121720
Tssr121721 13 23571131 to 23571141 10 - TSS region transcription start site region 121721
Tssr121722 13 23571151 to 23571170 19 - TSS region transcription start site region 121722
Tssr121723 13 23571186 to 23571189 3 - TSS region transcription start site region 121723
Tssr121724 13 23571200 to 23571208 8 - TSS region transcription start site region 121724
Tssr118835 13 23571382 to 23571392 10 + TSS region transcription start site region 118835
Hist1h2bg 13 23571400 to 23571863 463 + protein coding gene histone cluster 1, H2bg
Tssr118836 13 23571846 to 23571855 9 + TSS region transcription start site region 118836
Hist1h2bf 13 23573760 to 23574190 430 - protein coding gene histone cluster 1, H2bf
Cpgi5364 13 23574181 to 23574482 301 CpG island CpG island 5364
Tssr121725 13 23574199 to 23574229 30 - TSS region transcription start site region 121725