Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:23259613-23779684

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259 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr118820 13 23260915 to 23260919 4 + TSS region transcription start site region 118820
Gm11331 13 23266534 to 23266821 287 + pseudogene predicted gene 11331
Vmn1r-ps135 13 23268880 to 23269474 594 + pseudogene vomeronasal 1 receptor, pseudogene 135
Cpgi5344 13 23270326 to 23270774 448 CpG island CpG island 5344
n-TIaat15 13 23270421 to 23270516 95 - tRNA gene nuclear encoded tRNA isoleucine 15 (anticodon TAT)
4930557F10Rik 13 23276204 to 23313400 37196 - lincRNA gene RIKEN cDNA 4930557F10 gene
4933404K08Rik 13 23278350 to 23282267 3917 + lincRNA gene RIKEN cDNA 4933404K08 gene
Gm40832 13 23284323 to 23286746 2423 - lncRNA gene predicted gene, 40832
n-TVaac4 13 23285401 to 23285473 72 + tRNA gene nuclear encoded tRNA valine 4 (anticodon AAC)
n-TAagc10 13 23285649 to 23285721 72 + tRNA gene nuclear encoded tRNA alanine 10 (anticodon AGC)
Cpgi5345 13 23286161 to 23286596 435 CpG island CpG island 5345
Gm11333 13 23298049 to 23298196 147 + pseudogene predicted gene 11333
n-TVaac6 13 23298781 to 23298853 72 + tRNA gene nuclear encoded tRNA valine 6 (anticodon AAC)
n-TAagc11 13 23299061 to 23299133 72 + tRNA gene nuclear encoded tRNA alanine 11 (anticodon AGC)
n-TVcac4 13 23300122 to 23300194 72 + tRNA gene nuclear encoded tRNA valine 4 (anticodon CAC)
n-TVcac11 13 23307629 to 23307701 72 + tRNA gene nuclear encoded tRNA valine 11 (anticodon CAC)
n-TIaat9 13 23309052 to 23309125 73 - tRNA gene nuclear encoded tRNA isoleucine 9 (anticodon AAT)
4930597G05Rik 13 23309430 to 23310168 738 unclassified gene RIKEN cDNA 4930597G05 gene
Cpgi5346 13 23309489 to 23309887 398 CpG island CpG island 5346
Tssr121691 13 23310153 to 23310172 19 - TSS region transcription start site region 121691
Cpgi5347 13 23312918 to 23313774 856 CpG island CpG island 5347
Tssr121692 13 23313354 to 23313361 7 - TSS region transcription start site region 121692
Tssr121693 13 23313387 to 23313399 12 - TSS region transcription start site region 121693
Tssr121694 13 23313400 to 23313414 14 - TSS region transcription start site region 121694
4930586N03Rik 13 23313525 to 23385799 72274 + antisense lncRNA gene RIKEN cDNA 4930586N03 gene
n-TMcat12 13 23317466 to 23317538 72 + tRNA gene nuclear encoded tRNA methionine 12 (anticodon CAT)
Zfp322a 13 23353103 to 23369208 16105 - protein coding gene zinc finger protein 322A
Cpgi5348 13 23368773 to 23369461 688 CpG island CpG island 5348
Tssr121695 13 23368969 to 23369011 42 - TSS region transcription start site region 121695
Tssr121696 13 23369156 to 23369217 61 - TSS region transcription start site region 121696
Gm11334 13 23382505 to 23382660 155 + pseudogene predicted gene 11334
Cpgi5349 13 23395734 to 23396696 962 CpG island CpG island 5349
n-TIaat3 13 23397060 to 23397133 73 + tRNA gene nuclear encoded tRNA isoleucine 3 (anticodon AAT)
n-TAagc12 13 23400795 to 23400867 72 - tRNA gene nuclear encoded tRNA alanine 12 (anticodon AGC)
n-TVaac2 13 23401073 to 23401145 72 - tRNA gene nuclear encoded tRNA valine 2 (anticodon AAC)
n-TVcac2 13 23412077 to 23412149 72 - tRNA gene nuclear encoded tRNA valine 2 (anticodon CAC)
Cpgi5350 13 23412205 to 23412481 276 CpG island CpG island 5350
n-TAagc7 13 23412941 to 23413013 72 - tRNA gene nuclear encoded tRNA alanine 7 (anticodon AGC)
n-TVaac5 13 23413248 to 23413320 72 - tRNA gene nuclear encoded tRNA valine 5 (anticodon AAC)
Abt1 13 23418361 to 23423866 5505 - protein coding gene activator of basal transcription 1
Cpgi5351 13 23423406 to 23424135 729 CpG island CpG island 5351
Tssr121697 13 23423766 to 23423775 9 - TSS region transcription start site region 121697
Tssr121698 13 23423798 to 23423808 10 - TSS region transcription start site region 121698
Tssr121699 13 23423836 to 23423884 48 - TSS region transcription start site region 121699
2310057B04Rik 13 23423984 to 23425259 1275 unclassified non-coding RNA gene RIKEN cDNA 2310057B04 gene
Cpgi5352 13 23424536 to 23424953 417 CpG island CpG island 5352
n-TYgta3 13 23425646 to 23425734 88 - tRNA gene nuclear encoded tRNA tyrosine 3 (anticodon GTA)
n-TYgta4 13 23426505 to 23426592 87 + tRNA gene nuclear encoded tRNA tyrosine 4 (anticodon GTA)
n-TYgta5 13 23427095 to 23427180 85 - tRNA gene nuclear encoded tRNA tyrosine 5 (anticodon GTA)
C230035I16Rik 13 23427976 to 23431017 3041 - lincRNA gene RIKEN cDNA C230035I16 gene
n-TYgta6 13 23428738 to 23428826 88 - tRNA gene nuclear encoded tRNA tyrosine 6 (anticodon GTA)
Cpgi5353 13 23430712 to 23431101 389 CpG island CpG island 5353
Tssr121700 13 23430726 to 23430776 50 - TSS region transcription start site region 121700
Tssr121701 13 23430945 to 23430979 34 - TSS region transcription start site region 121701
n-TAagc13 13 23431412 to 23431484 72 + tRNA gene nuclear encoded tRNA alanine 13 (anticodon AGC)
n-TYgta7 13 23432990 to 23433077 87 - tRNA gene nuclear encoded tRNA tyrosine 7 (anticodon GTA)
Gm40833 13 23433296 to 23434672 1376 - lncRNA gene predicted gene, 40833
n-TKctt11 13 23436340 to 23436412 72 + tRNA gene nuclear encoded tRNA lysine 11 (anticodon CTT)
n-TPagg3 13 23436994 to 23437065 71 - tRNA gene nuclear encoded tRNA proline 3 (anticodon AGG)
n-TIaat8 13 23438109 to 23438182 73 - tRNA gene nuclear encoded tRNA isoleucine 8 (anticodon AAT)
n-TAcgc10 13 23438697 to 23438768 71 - tRNA gene nuclear encoded tRNA alanine 10 (anticodon CGC)
Gm46404 13 23441822 to 23445935 4113 - lincRNA gene predicted gene, 46404
Cpgi5354 13 23445552 to 23446142 590 CpG island CpG island 5354
Tssr121702 13 23445902 to 23445949 47 - TSS region transcription start site region 121702
n-TVcac9 13 23446142 to 23446214 72 - tRNA gene nuclear encoded tRNA valine 9 (anticodon CAC)
n-TRacg5 13 23446792 to 23446864 72 - tRNA gene nuclear encoded tRNA arginine 5 (anticodon ACG)
n-TTagt6 13 23450622 to 23450695 73 + tRNA gene nuclear encoded tRNA threonine 6 (anticodon AGT)
n-TLcag10 13 23453432 to 23453514 82 - tRNA gene nuclear encoded tRNA leucine 10 (anticodon CAG)
Cpgi5355 13 23453563 to 23453791 228 CpG island CpG island 5355
Btn1a1 13 23456992 to 23465901 8909 - protein coding gene butyrophilin, subfamily 1, member A1
Tssr121703 13 23458437 to 23458439 2 - TSS region transcription start site region 121703
Tssr121704 13 23462793 to 23462795 2 - TSS region transcription start site region 121704
n-TEttc5 13 23463535 to 23463606 71 + tRNA gene nuclear encoded tRNA glutamic acid 5 (anticodon TTC)
Cpgi5356 13 23463991 to 23464614 623 CpG island CpG island 5356
Tssr121705 13 23465768 to 23465773 5 - TSS region transcription start site region 121705
Tssr121706 13 23465839 to 23465859 20 - TSS region transcription start site region 121706
Tssr121707 13 23465862 to 23465870 8 - TSS region transcription start site region 121707
Tssr121708 13 23465872 to 23465879 7 - TSS region transcription start site region 121708
Tssr121709 13 23465895 to 23465914 19 - TSS region transcription start site region 121709
n-TYgta8 13 23467076 to 23467165 89 + tRNA gene nuclear encoded tRNA tyrosine 8 (anticodon GTA)
Tssr118821 13 23472985 to 23472996 11 + TSS region transcription start site region 118821
Btn2a2 13 23477676 to 23488857 11181 - protein coding gene butyrophilin, subfamily 2, member A2
Tssr118822 13 23492274 to 23492284 10 + TSS region transcription start site region 118822
Tssr118823 13 23493819 to 23493830 11 + TSS region transcription start site region 118823
Tssr118824 13 23493832 to 23493843 11 + TSS region transcription start site region 118824
Tssr118825 13 23493845 to 23493857 12 + TSS region transcription start site region 118825
n-TWcca3 13 23498106 to 23498177 71 + tRNA gene nuclear encoded tRNA trytophan 3 (anticodon CCA)
n-TMcat5 13 23500080 to 23500151 71 + tRNA gene nuclear encoded tRNA methionine 5 (anticodon CAT)
n-TRacg4 13 23500522 to 23500594 72 - tRNA gene nuclear encoded tRNA arginine 4 (anticodon ACG)
n-TSaga7 13 23500957 to 23501038 81 - tRNA gene nuclear encoded tRNA serine 7 (anticodon AGA)
n-TRtcg3 13 23503980 to 23504052 72 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon TCG)
n-TWcca4 13 23506519 to 23506590 71 + tRNA gene nuclear encoded tRNA trytophan 4 (anticodon CCA)
n-TGgcc6 13 23517203 to 23517273 70 + tRNA gene nuclear encoded tRNA glycine 6 (anticodon GCC)
n-TMcat6 13 23517692 to 23517763 71 + tRNA gene nuclear encoded tRNA methionine 6 (anticodon CAT)
Cpgi5357 13 23518138 to 23518289 151 CpG island CpG island 5357
n-TStga1 13 23518146 to 23518227 81 + tRNA gene nuclear encoded tRNA serine 1 (anticodon TGA)
n-TQttg4 13 23519050 to 23519121 71 + tRNA gene nuclear encoded tRNA glutamine 4 (anticodon TTG)
n-TQttg5 13 23519613 to 23519684 71 + tRNA gene nuclear encoded tRNA glutamine 5 (anticodon TTG)
n-TSgct4 13 23521870 to 23521951 81 + tRNA gene nuclear encoded tRNA serine 4 (anticodon GCT)
n-TRtcg1 13 23526456 to 23526528 72 - tRNA gene nuclear encoded tRNA arginine 1 (anticodon TCG)
Gm11335 13 23527011 to 23530943 3932 - lincRNA gene predicted gene 11335
n-TMcat9 13 23530348 to 23530419 71 - tRNA gene nuclear encoded tRNA methionine 9 (anticodon CAT)
Cpgi5358 13 23530896 to 23531874 978 CpG island CpG island 5358
Tssr121710 13 23530917 to 23530943 26 - TSS region transcription start site region 121710
Tssr121711 13 23530947 to 23530966 19 - TSS region transcription start site region 121711
Hist1h4h 13 23531044 to 23531478 434 + protein coding gene histone cluster 1, H4h
Tssr118826 13 23531083 to 23531088 5 + TSS region transcription start site region 118826
Tssr118827 13 23531842 to 23531853 11 + TSS region transcription start site region 118827
Tssr121712 13 23533656 to 23533661 5 - TSS region transcription start site region 121712
Tssr4007 13 23533685 to 23533705 20 - TSS region transcription start site region 4007
Tssr118828 13 23533869 to 23533882 13 + TSS region transcription start site region 118828
Hist1h2af 13 23533906 to 23534304 398 + protein coding gene histone cluster 1, H2af
Gm44297 13 23534114 to 23534254 140 - miRNA gene predicted gene, 44297
Cpgi5359 13 23535157 to 23535473 316 CpG island CpG island 5359
Tssr121713 13 23535165 to 23535219 54 - TSS region transcription start site region 121713
Tssr118829 13 23535411 to 23535427 16 + TSS region transcription start site region 118829
Hist1h3g 13 23535418 to 23535909 491 + protein coding gene histone cluster 1, H3g
Hist1h2bh 13 23542923 to 23543444 521 - protein coding gene histone cluster 1, H2bh
Cpgi5360 13 23543342 to 23543549 207 CpG island CpG island 5360
Tssr121714 13 23543383 to 23543402 19 - TSS region transcription start site region 121714
Hist1h3f 13 23544052 to 23544954 902 + protein coding gene histone cluster 1, H3f
Tssr118830 13 23544458 to 23544476 18 + TSS region transcription start site region 118830
Cpgi5361 13 23551234 to 23551791 557 CpG island CpG island 5361
Hist1h4f 13 23551286 to 23551643 357 - protein coding gene histone cluster 1, H4f
Tssr121715 13 23551662 to 23551672 10 - TSS region transcription start site region 121715
Tssr118831 13 23551830 to 23551863 33 + TSS region transcription start site region 118831
Cpgi5362 13 23554913 to 23555762 849 CpG island CpG island 5362
Tssr118832 13 23555023 to 23555039 16 + TSS region transcription start site region 118832
Hist1h1d 13 23555032 to 23555807 775 + protein coding gene histone cluster 1, H1d
Tssr121716 13 23555551 to 23555585 34 - TSS region transcription start site region 121716
Tssr118833 13 23555616 to 23555633 17 + TSS region transcription start site region 118833
Tssr121717 13 23556114 to 23556123 9 - TSS region transcription start site region 121717
Hist1h3e 13 23561896 to 23562365 469 - protein coding gene histone cluster 1, H3e
Cpgi5363 13 23561942 to 23562631 689 CpG island CpG island 5363
Tssr121718 13 23562376 to 23562392 16 - TSS region transcription start site region 121718
Tssr118834 13 23562585 to 23562641 56 + TSS region transcription start site region 118834
Hist1h2ae 13 23570663 to 23571220 557 - protein coding gene histone cluster 1, H2ae
Gm44394 13 23570726 to 23570863 137 + miRNA gene predicted gene, 44394
Tssr121719 13 23571034 to 23571056 22 - TSS region transcription start site region 121719
Tssr4008 13 23571111 to 23571112 1 - TSS region transcription start site region 4008
Tssr121720 13 23571116 to 23571125 9 - TSS region transcription start site region 121720
Tssr121721 13 23571131 to 23571141 10 - TSS region transcription start site region 121721
Tssr121722 13 23571151 to 23571170 19 - TSS region transcription start site region 121722
Tssr121723 13 23571186 to 23571189 3 - TSS region transcription start site region 121723
Tssr121724 13 23571200 to 23571208 8 - TSS region transcription start site region 121724
Tssr118835 13 23571382 to 23571392 10 + TSS region transcription start site region 118835
Hist1h2bg 13 23571400 to 23571863 463 + protein coding gene histone cluster 1, H2bg
Tssr118836 13 23571846 to 23571855 9 + TSS region transcription start site region 118836
Hist1h2bf 13 23573760 to 23574190 430 - protein coding gene histone cluster 1, H2bf
Cpgi5364 13 23574181 to 23574482 301 CpG island CpG island 5364
Tssr121725 13 23574199 to 23574229 30 - TSS region transcription start site region 121725
Hist1h2ad 13 23574381 to 23574915 534 + protein coding gene histone cluster 1, H2ad
Tssr118837 13 23574434 to 23574449 15 + TSS region transcription start site region 118837
Gm44359 13 23574716 to 23574853 137 - miRNA gene predicted gene, 44359
Tssr118838 13 23575753 to 23575773 20 + TSS region transcription start site region 118838
Hist1h3d 13 23575763 to 23576266 503 + protein coding gene histone cluster 1, H3d
Tssr118839 13 23575782 to 23575793 11 + TSS region transcription start site region 118839
Tssr118840 13 23578333 to 23578337 4 + TSS region transcription start site region 118840
Cpgi5365 13 23581540 to 23582004 464 CpG island CpG island 5365
Tssr118841 13 23581563 to 23581569 6 + TSS region transcription start site region 118841
Hist1h4d 13 23581602 to 23581969 367 + protein coding gene histone cluster 1, H4d
Hist1h2be 13 23583670 to 23621124 37454 - protein coding gene histone cluster 1, H2be
Cpgi5366 13 23585015 to 23585525 510 CpG island CpG island 5366
Tssr121726 13 23585970 to 23585981 11 - TSS region transcription start site region 121726
Tssr121727 13 23585983 to 23585995 12 - TSS region transcription start site region 121727
Gm33387 13 23591186 to 23606239 15053 + lncRNA gene predicted gene, 33387
Tssr118842 13 23591479 to 23591529 50 + TSS region transcription start site region 118842
Gm11398 13 23620730 to 23621049 319 - pseudogene predicted gene 11398
Tssr121728 13 23621090 to 23621115 25 - TSS region transcription start site region 121728
Cpgi5367 13 23621282 to 23621458 176 CpG island CpG island 5367
Hist1h1e 13 23621777 to 23622558 781 - protein coding gene histone cluster 1, H1e
Tssr118843 13 23621851 to 23621872 21 + TSS region transcription start site region 118843
Tssr121729 13 23621889 to 23621931 42 - TSS region transcription start site region 121729
Tssr121730 13 23621937 to 23621989 52 - TSS region transcription start site region 121730
Tssr121731 13 23621990 to 23622003 13 - TSS region transcription start site region 121731
Tssr118844 13 23621995 to 23622051 56 + TSS region transcription start site region 118844
Tssr121732 13 23622017 to 23622106 89 - TSS region transcription start site region 121732
Cpgi5368 13 23622033 to 23622744 711 CpG island CpG island 5368
Tssr121733 13 23622548 to 23622563 15 - TSS region transcription start site region 121733
Tssr118845 13 23652436 to 23652447 11 + TSS region transcription start site region 118845
Gm22452 13 23663021 to 23663124 103 + snRNA gene predicted gene, 22452
Gm24991 13 23682545 to 23682652 107 - rRNA gene predicted gene, 24991
Hist1h2ac 13 23683473 to 23683959 486 - protein coding gene histone cluster 1, H2ac
Gm44350 13 23683535 to 23683672 137 + miRNA gene predicted gene, 44350
Cpgi5369 13 23683908 to 23684247 339 CpG island CpG island 5369
Tssr121734 13 23683941 to 23683967 26 - TSS region transcription start site region 121734
Tssr118846 13 23684192 to 23684208 16 + TSS region transcription start site region 118846
Hist1h2bc 13 23684199 to 23692480 8281 + protein coding gene histone cluster 1, H2bc
Tssr121735 13 23684618 to 23684648 30 - TSS region transcription start site region 121735
Tssr118847 13 23685795 to 23685809 14 + TSS region transcription start site region 118847
Tssr118848 13 23692091 to 23692118 27 + TSS region transcription start site region 118848
Tssr118849 13 23695791 to 23695817 26 + TSS region transcription start site region 118849
Hist1h1t 13 23695811 to 23696545 734 + protein coding gene histone cluster 1, H1t
Tssr118850 13 23695823 to 23695833 10 + TSS region transcription start site region 118850
Cpgi5370 13 23698000 to 23698538 538 CpG island CpG island 5370
Hist1h4c 13 23698084 to 23698458 374 - protein coding gene histone cluster 1, H4c
Tssr121736 13 23698455 to 23698460 5 - TSS region transcription start site region 121736
Hfe 13 23702730 to 23710986 8256 - protein coding gene homeostatic iron regulator
Tssr121737 13 23704324 to 23704334 10 - TSS region transcription start site region 121737
Tssr121738 13 23706041 to 23706063 22 - TSS region transcription start site region 121738