Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:22649434-25050716

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568 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11307 13 22675696 to 22676959 1263 + pseudogene predicted gene 11307
Vmn1r-ps111 13 22691042 to 22691966 924 - pseudogene vomeronasal 1 receptor, pseudogene 111
Gm11309 13 22691299 to 22714987 23688 + antisense lncRNA gene predicted gene 11309
Vmn1r207-ps 13 22725684 to 22726622 938 - pseudogene vomeronasal 1 receptor 207, pseudogene
Vmn1r-ps112 13 22733090 to 22733633 543 - pseudogene vomeronasal 1 receptor, pseudogene 112
Vmn1r-ps113 13 22736988 to 22738093 1105 - pseudogene vomeronasal 1 receptor, pseudogene 113
Gm11313 13 22758927 to 22759358 431 + pseudogene predicted gene 11313
Vmn1r208 13 22772399 to 22773325 926 - protein coding gene vomeronasal 1 receptor 208
Gm11314 13 22772656 to 22773471 815 + antisense lncRNA gene predicted gene 11314
Vmn1r209 13 22805580 to 22806518 938 - protein coding gene vomeronasal 1 receptor 209
Vmn1r210 13 22827194 to 22828114 920 - protein coding gene vomeronasal 1 receptor 210
Vmn1r-ps114 13 22844994 to 22846033 1039 - pseudogene vomeronasal 1 receptor, pseudogene 114
Vmn1r211 13 22851599 to 22852495 896 - protein coding gene vomeronasal 1 receptor 211
Vmn1r-ps115 13 22866640 to 22866806 166 + pseudogene vomeronasal 1 receptor, pseudogene 115
Vmn1r-ps116 13 22875105 to 22875308 203 - pseudogene vomeronasal 1 receptor, pseudogene 116
Gm23774 13 22879377 to 22879507 130 - snoRNA gene predicted gene, 23774
Vmn1r212 13 22883042 to 22884205 1163 - protein coding gene vomeronasal 1 receptor 212
Vmn1r-ps117 13 22898386 to 22898705 319 - pseudogene vomeronasal 1 receptor, pseudogene 117
Gm11320 13 22902362 to 22902824 462 - pseudogene predicted gene 11320
Gm11321 13 22931298 to 22932199 901 - pseudogene predicted gene 11321
Vmn1r-ps120 13 22939860 to 22940179 319 - pseudogene vomeronasal 1 receptor, pseudogene 120
Gm11322 13 22943812 to 22944246 434 - pseudogene predicted gene 11322
Gm11318 13 22960872 to 22961773 901 + pseudogene predicted gene 11318
Vmn1r-ps123 13 22996264 to 22996500 236 - pseudogene vomeronasal 1 receptor, pseudogene 123
Vmn1r213 13 23011249 to 23012403 1154 + protein coding gene vomeronasal 1 receptor 213
Vmn1r-ps124 13 23016210 to 23016366 156 - pseudogene vomeronasal 1 receptor, pseudogene 124
Vmn1r-ps125 13 23023251 to 23023540 289 + pseudogene vomeronasal 1 receptor, pseudogene 125
Vmn1r214 13 23034338 to 23035441 1103 + protein coding gene vomeronasal 1 receptor 214
Gm19153 13 23042416 to 23042994 578 - pseudogene predicted gene, 19153
Vmn1r-ps126 13 23056710 to 23057617 907 + pseudogene vomeronasal 1 receptor, pseudogene 126
Vmn1r215 13 23075792 to 23076694 902 + protein coding gene vomeronasal 1 receptor 215
Vmn1r216 13 23099149 to 23100045 896 + protein coding gene vomeronasal 1 receptor 216
Gm11325 13 23103454 to 23103922 468 + pseudogene predicted gene 11325
Vmn1r-ps127 13 23104348 to 23104790 442 + pseudogene vomeronasal 1 receptor, pseudogene 127
Vmn1r217 13 23113834 to 23118088 4254 - protein coding gene vomeronasal 1 receptor 217
Vmn1r-ps128 13 23124505 to 23126243 1738 + pseudogene vomeronasal 1 receptor, pseudogene 128
Vmn1r218 13 23136485 to 23137381 896 + protein coding gene vomeronasal 1 receptor 218
Vmn1r-ps129 13 23153310 to 23153828 518 + pseudogene vomeronasal 1 receptor, pseudogene 129
Vmn1r219 13 23162643 to 23163581 938 + protein coding gene vomeronasal 1 receptor 219
Vmn1r-ps130 13 23166611 to 23167053 442 + pseudogene vomeronasal 1 receptor, pseudogene 130
Vmn1r220 13 23183628 to 23184524 896 - protein coding gene vomeronasal 1 receptor 220
Vmn1r-ps131 13 23198348 to 23198597 249 - pseudogene vomeronasal 1 receptor, pseudogene 131
Vmn1r-ps132 13 23201161 to 23202052 891 - pseudogene vomeronasal 1 receptor, pseudogene 132
Vmn1r221 13 23217373 to 23218311 938 + protein coding gene vomeronasal 1 receptor 221
Vmn1r-ps133 13 23228423 to 23228752 329 - pseudogene vomeronasal 1 receptor, pseudogene 133
Vmn1r222 13 23232115 to 23233041 926 - protein coding gene vomeronasal 1 receptor 222
Vmn1r-ps134 13 23241974 to 23242365 391 - pseudogene vomeronasal 1 receptor, pseudogene 134
Vmn1r223 13 23249238 to 23250323 1085 + protein coding gene vomeronasal 1 receptor 223
Gm33094 13 23251097 to 23259019 7922 - lncRNA gene predicted gene, 33094
Tssr118820 13 23260915 to 23260919 4 + TSS region transcription start site region 118820
Gm11331 13 23266534 to 23266821 287 + pseudogene predicted gene 11331
Vmn1r-ps135 13 23268880 to 23269474 594 + pseudogene vomeronasal 1 receptor, pseudogene 135
Cpgi5344 13 23270326 to 23270774 448 CpG island CpG island 5344
n-TIaat15 13 23270421 to 23270516 95 - tRNA gene nuclear encoded tRNA isoleucine 15 (anticodon TAT)
4930557F10Rik 13 23276204 to 23313400 37196 - lincRNA gene RIKEN cDNA 4930557F10 gene
4933404K08Rik 13 23278350 to 23282267 3917 + lincRNA gene RIKEN cDNA 4933404K08 gene
Gm40832 13 23284323 to 23286746 2423 - lncRNA gene predicted gene, 40832
n-TVaac4 13 23285401 to 23285473 72 + tRNA gene nuclear encoded tRNA valine 4 (anticodon AAC)
n-TAagc10 13 23285649 to 23285721 72 + tRNA gene nuclear encoded tRNA alanine 10 (anticodon AGC)
Cpgi5345 13 23286161 to 23286596 435 CpG island CpG island 5345
Gm11333 13 23298049 to 23298196 147 + pseudogene predicted gene 11333
n-TVaac6 13 23298781 to 23298853 72 + tRNA gene nuclear encoded tRNA valine 6 (anticodon AAC)
n-TAagc11 13 23299061 to 23299133 72 + tRNA gene nuclear encoded tRNA alanine 11 (anticodon AGC)
n-TVcac4 13 23300122 to 23300194 72 + tRNA gene nuclear encoded tRNA valine 4 (anticodon CAC)
n-TVcac11 13 23307629 to 23307701 72 + tRNA gene nuclear encoded tRNA valine 11 (anticodon CAC)
n-TIaat9 13 23309052 to 23309125 73 - tRNA gene nuclear encoded tRNA isoleucine 9 (anticodon AAT)
4930597G05Rik 13 23309430 to 23310168 738 unclassified gene RIKEN cDNA 4930597G05 gene
Cpgi5346 13 23309489 to 23309887 398 CpG island CpG island 5346
Tssr121691 13 23310153 to 23310172 19 - TSS region transcription start site region 121691
Cpgi5347 13 23312918 to 23313774 856 CpG island CpG island 5347
Tssr121692 13 23313354 to 23313361 7 - TSS region transcription start site region 121692
Tssr121693 13 23313387 to 23313399 12 - TSS region transcription start site region 121693
Tssr121694 13 23313400 to 23313414 14 - TSS region transcription start site region 121694
4930586N03Rik 13 23313525 to 23385799 72274 + antisense lncRNA gene RIKEN cDNA 4930586N03 gene
n-TMcat12 13 23317466 to 23317538 72 + tRNA gene nuclear encoded tRNA methionine 12 (anticodon CAT)
Zfp322a 13 23353103 to 23369208 16105 - protein coding gene zinc finger protein 322A
Cpgi5348 13 23368773 to 23369461 688 CpG island CpG island 5348
Tssr121695 13 23368969 to 23369011 42 - TSS region transcription start site region 121695
Tssr121696 13 23369156 to 23369217 61 - TSS region transcription start site region 121696
Gm11334 13 23382505 to 23382660 155 + pseudogene predicted gene 11334
Cpgi5349 13 23395734 to 23396696 962 CpG island CpG island 5349
n-TIaat3 13 23397060 to 23397133 73 + tRNA gene nuclear encoded tRNA isoleucine 3 (anticodon AAT)
n-TAagc12 13 23400795 to 23400867 72 - tRNA gene nuclear encoded tRNA alanine 12 (anticodon AGC)
n-TVaac2 13 23401073 to 23401145 72 - tRNA gene nuclear encoded tRNA valine 2 (anticodon AAC)
n-TVcac2 13 23412077 to 23412149 72 - tRNA gene nuclear encoded tRNA valine 2 (anticodon CAC)
Cpgi5350 13 23412205 to 23412481 276 CpG island CpG island 5350
n-TAagc7 13 23412941 to 23413013 72 - tRNA gene nuclear encoded tRNA alanine 7 (anticodon AGC)
n-TVaac5 13 23413248 to 23413320 72 - tRNA gene nuclear encoded tRNA valine 5 (anticodon AAC)
Abt1 13 23418361 to 23423866 5505 - protein coding gene activator of basal transcription 1
Cpgi5351 13 23423406 to 23424135 729 CpG island CpG island 5351
Tssr121697 13 23423766 to 23423775 9 - TSS region transcription start site region 121697
Tssr121698 13 23423798 to 23423808 10 - TSS region transcription start site region 121698
Tssr121699 13 23423836 to 23423884 48 - TSS region transcription start site region 121699
2310057B04Rik 13 23423984 to 23425259 1275 unclassified non-coding RNA gene RIKEN cDNA 2310057B04 gene
Cpgi5352 13 23424536 to 23424953 417 CpG island CpG island 5352
n-TYgta3 13 23425646 to 23425734 88 - tRNA gene nuclear encoded tRNA tyrosine 3 (anticodon GTA)
n-TYgta4 13 23426505 to 23426592 87 + tRNA gene nuclear encoded tRNA tyrosine 4 (anticodon GTA)
n-TYgta5 13 23427095 to 23427180 85 - tRNA gene nuclear encoded tRNA tyrosine 5 (anticodon GTA)
C230035I16Rik 13 23427976 to 23431017 3041 - lincRNA gene RIKEN cDNA C230035I16 gene
n-TYgta6 13 23428738 to 23428826 88 - tRNA gene nuclear encoded tRNA tyrosine 6 (anticodon GTA)
Cpgi5353 13 23430712 to 23431101 389 CpG island CpG island 5353
Tssr121700 13 23430726 to 23430776 50 - TSS region transcription start site region 121700
Tssr121701 13 23430945 to 23430979 34 - TSS region transcription start site region 121701
n-TAagc13 13 23431412 to 23431484 72 + tRNA gene nuclear encoded tRNA alanine 13 (anticodon AGC)
n-TYgta7 13 23432990 to 23433077 87 - tRNA gene nuclear encoded tRNA tyrosine 7 (anticodon GTA)
Gm40833 13 23433296 to 23434672 1376 - lncRNA gene predicted gene, 40833
n-TKctt11 13 23436340 to 23436412 72 + tRNA gene nuclear encoded tRNA lysine 11 (anticodon CTT)
n-TPagg3 13 23436994 to 23437065 71 - tRNA gene nuclear encoded tRNA proline 3 (anticodon AGG)
n-TIaat8 13 23438109 to 23438182 73 - tRNA gene nuclear encoded tRNA isoleucine 8 (anticodon AAT)
n-TAcgc10 13 23438697 to 23438768 71 - tRNA gene nuclear encoded tRNA alanine 10 (anticodon CGC)
Gm46404 13 23441822 to 23445935 4113 - lincRNA gene predicted gene, 46404
Cpgi5354 13 23445552 to 23446142 590 CpG island CpG island 5354
Tssr121702 13 23445902 to 23445949 47 - TSS region transcription start site region 121702
n-TVcac9 13 23446142 to 23446214 72 - tRNA gene nuclear encoded tRNA valine 9 (anticodon CAC)
n-TRacg5 13 23446792 to 23446864 72 - tRNA gene nuclear encoded tRNA arginine 5 (anticodon ACG)
n-TTagt6 13 23450622 to 23450695 73 + tRNA gene nuclear encoded tRNA threonine 6 (anticodon AGT)
n-TLcag10 13 23453432 to 23453514 82 - tRNA gene nuclear encoded tRNA leucine 10 (anticodon CAG)
Cpgi5355 13 23453563 to 23453791 228 CpG island CpG island 5355
Btn1a1 13 23456992 to 23465901 8909 - protein coding gene butyrophilin, subfamily 1, member A1
Tssr121703 13 23458437 to 23458439 2 - TSS region transcription start site region 121703
Tssr121704 13 23462793 to 23462795 2 - TSS region transcription start site region 121704
n-TEttc5 13 23463535 to 23463606 71 + tRNA gene nuclear encoded tRNA glutamic acid 5 (anticodon TTC)
Cpgi5356 13 23463991 to 23464614 623 CpG island CpG island 5356
Tssr121705 13 23465768 to 23465773 5 - TSS region transcription start site region 121705
Tssr121706 13 23465839 to 23465859 20 - TSS region transcription start site region 121706
Tssr121707 13 23465862 to 23465870 8 - TSS region transcription start site region 121707
Tssr121708 13 23465872 to 23465879 7 - TSS region transcription start site region 121708
Tssr121709 13 23465895 to 23465914 19 - TSS region transcription start site region 121709
n-TYgta8 13 23467076 to 23467165 89 + tRNA gene nuclear encoded tRNA tyrosine 8 (anticodon GTA)
Tssr118821 13 23472985 to 23472996 11 + TSS region transcription start site region 118821
Btn2a2 13 23477676 to 23488857 11181 - protein coding gene butyrophilin, subfamily 2, member A2
Tssr118822 13 23492274 to 23492284 10 + TSS region transcription start site region 118822
Tssr118823 13 23493819 to 23493830 11 + TSS region transcription start site region 118823
Tssr118824 13 23493832 to 23493843 11 + TSS region transcription start site region 118824
Tssr118825 13 23493845 to 23493857 12 + TSS region transcription start site region 118825
n-TWcca3 13 23498106 to 23498177 71 + tRNA gene nuclear encoded tRNA trytophan 3 (anticodon CCA)
n-TMcat5 13 23500080 to 23500151 71 + tRNA gene nuclear encoded tRNA methionine 5 (anticodon CAT)
n-TRacg4 13 23500522 to 23500594 72 - tRNA gene nuclear encoded tRNA arginine 4 (anticodon ACG)
n-TSaga7 13 23500957 to 23501038 81 - tRNA gene nuclear encoded tRNA serine 7 (anticodon AGA)
n-TRtcg3 13 23503980 to 23504052 72 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon TCG)
n-TWcca4 13 23506519 to 23506590 71 + tRNA gene nuclear encoded tRNA trytophan 4 (anticodon CCA)
n-TGgcc6 13 23517203 to 23517273 70 + tRNA gene nuclear encoded tRNA glycine 6 (anticodon GCC)
n-TMcat6 13 23517692 to 23517763 71 + tRNA gene nuclear encoded tRNA methionine 6 (anticodon CAT)
Cpgi5357 13 23518138 to 23518289 151 CpG island CpG island 5357
n-TStga1 13 23518146 to 23518227 81 + tRNA gene nuclear encoded tRNA serine 1 (anticodon TGA)
n-TQttg4 13 23519050 to 23519121 71 + tRNA gene nuclear encoded tRNA glutamine 4 (anticodon TTG)
n-TQttg5 13 23519613 to 23519684 71 + tRNA gene nuclear encoded tRNA glutamine 5 (anticodon TTG)
n-TSgct4 13 23521870 to 23521951 81 + tRNA gene nuclear encoded tRNA serine 4 (anticodon GCT)
n-TRtcg1 13 23526456 to 23526528 72 - tRNA gene nuclear encoded tRNA arginine 1 (anticodon TCG)
Gm11335 13 23527011 to 23530943 3932 - lincRNA gene predicted gene 11335
n-TMcat9 13 23530348 to 23530419 71 - tRNA gene nuclear encoded tRNA methionine 9 (anticodon CAT)
Cpgi5358 13 23530896 to 23531874 978 CpG island CpG island 5358
Tssr121710 13 23530917 to 23530943 26 - TSS region transcription start site region 121710
Tssr121711 13 23530947 to 23530966 19 - TSS region transcription start site region 121711
Hist1h4h 13 23531044 to 23531478 434 + protein coding gene histone cluster 1, H4h
Tssr118826 13 23531083 to 23531088 5 + TSS region transcription start site region 118826
Tssr118827 13 23531842 to 23531853 11 + TSS region transcription start site region 118827
Tssr121712 13 23533656 to 23533661 5 - TSS region transcription start site region 121712
Tssr4007 13 23533685 to 23533705 20 - TSS region transcription start site region 4007
Tssr118828 13 23533869 to 23533882 13 + TSS region transcription start site region 118828
Hist1h2af 13 23533906 to 23534304 398 + protein coding gene histone cluster 1, H2af
Gm44297 13 23534114 to 23534254 140 - miRNA gene predicted gene, 44297
Cpgi5359 13 23535157 to 23535473 316 CpG island CpG island 5359
Tssr121713 13 23535165 to 23535219 54 - TSS region transcription start site region 121713
Tssr118829 13 23535411 to 23535427 16 + TSS region transcription start site region 118829
Hist1h3g 13 23535418 to 23535909 491 + protein coding gene histone cluster 1, H3g
Hist1h2bh 13 23542923 to 23543444 521 - protein coding gene histone cluster 1, H2bh
Cpgi5360 13 23543342 to 23543549 207 CpG island CpG island 5360
Tssr121714 13 23543383 to 23543402 19 - TSS region transcription start site region 121714
Hist1h3f 13 23544052 to 23544954 902 + protein coding gene histone cluster 1, H3f
Tssr118830 13 23544458 to 23544476 18 + TSS region transcription start site region 118830
Cpgi5361 13 23551234 to 23551791 557 CpG island CpG island 5361
Hist1h4f 13 23551286 to 23551643 357 - protein coding gene histone cluster 1, H4f
Tssr121715 13 23551662 to 23551672 10 - TSS region transcription start site region 121715
Tssr118831 13 23551830 to 23551863 33 + TSS region transcription start site region 118831
Cpgi5362 13 23554913 to 23555762 849 CpG island CpG island 5362
Tssr118832 13 23555023 to 23555039 16 + TSS region transcription start site region 118832
Hist1h1d 13 23555032 to 23555807 775 + protein coding gene histone cluster 1, H1d
Tssr121716 13 23555551 to 23555585 34 - TSS region transcription start site region 121716
Tssr118833 13 23555616 to 23555633 17 + TSS region transcription start site region 118833
Tssr121717 13 23556114 to 23556123 9 - TSS region transcription start site region 121717
Hist1h3e 13 23561896 to 23562365 469 - protein coding gene histone cluster 1, H3e
Cpgi5363 13 23561942 to 23562631 689 CpG island CpG island 5363
Tssr121718 13 23562376 to 23562392 16 - TSS region transcription start site region 121718
Tssr118834 13 23562585 to 23562641 56 + TSS region transcription start site region 118834
Hist1h2ae 13 23570663 to 23571220 557 - protein coding gene histone cluster 1, H2ae
Gm44394 13 23570726 to 23570863 137 + miRNA gene predicted gene, 44394
Tssr121719 13 23571034 to 23571056 22 - TSS region transcription start site region 121719
Tssr4008 13 23571111 to 23571112 1 - TSS region transcription start site region 4008
Tssr121720 13 23571116 to 23571125 9 - TSS region transcription start site region 121720
Tssr121721 13 23571131 to 23571141 10 - TSS region transcription start site region 121721
Tssr121722 13 23571151 to 23571170 19 - TSS region transcription start site region 121722
Tssr121723 13 23571186 to 23571189 3 - TSS region transcription start site region 121723
Tssr121724 13 23571200 to 23571208 8 - TSS region transcription start site region 121724
Tssr118835 13 23571382 to 23571392 10 + TSS region transcription start site region 118835
Hist1h2bg 13 23571400 to 23571863 463 + protein coding gene histone cluster 1, H2bg
Tssr118836 13 23571846 to 23571855 9 + TSS region transcription start site region 118836
Hist1h2bf 13 23573760 to 23574190 430 - protein coding gene histone cluster 1, H2bf
Cpgi5364 13 23574181 to 23574482 301 CpG island CpG island 5364
Tssr121725 13 23574199 to 23574229 30 - TSS region transcription start site region 121725