Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:22011272-22872164

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm11290 13 22014468 to 22020738 6270 + lincRNA gene predicted gene 11290
n-TVaac3 13 22015791 to 22015863 72 - tRNA gene nuclear encoded tRNA valine 3 (anticodon AAC)
Cpgi5338 13 22019927 to 22020333 406 CpG island CpG island 5338
n-TRacg1 13 22021144 to 22021216 72 - tRNA gene nuclear encoded tRNA arginine 1 (anticodon ACG)
n-TScga1 13 22022419 to 22022500 81 - tRNA gene nuclear encoded tRNA serine 1 (anticodon CGA)
n-TVcac8 13 22026548 to 22026620 72 + tRNA gene nuclear encoded tRNA valine 8 (anticodon CAC)
Gm11292 13 22026699 to 22032196 5497 + unclassified non-coding RNA gene predicted gene 11292
Cpgi5339 13 22028649 to 22029311 662 CpG island CpG island 5339
n-TIaat7 13 22029223 to 22029296 73 + tRNA gene nuclear encoded tRNA isoleucine 7 (anticodon AAT)
n-TTagt1 13 22030100 to 22030173 73 - tRNA gene nuclear encoded tRNA threonine 1 (anticodon AGT)
Hist1h2ah 13 22035164 to 22035568 404 - protein coding gene histone cluster 1, H2ah
Gm44390 13 22035164 to 22035307 143 + miRNA gene predicted gene, 44390
Cpgi5340 13 22035529 to 22035900 371 CpG island CpG island 5340
Tssr121688 13 22035589 to 22035606 17 - TSS region transcription start site region 121688
Tssr118816 13 22035829 to 22035848 19 + TSS region transcription start site region 118816
Hist1h2bk 13 22035870 to 22036345 475 + protein coding gene histone cluster 1, H2bk
Tssr118817 13 22035870 to 22035874 4 + TSS region transcription start site region 118817
Cpgi5341 13 22040909 to 22041468 559 CpG island CpG island 5341
Hist1h4i 13 22040960 to 22041362 402 - protein coding gene histone cluster 1, H4i
Tssr121689 13 22041357 to 22041363 6 - TSS region transcription start site region 121689
Hist1h2ag 13 22042478 to 22042949 471 - protein coding gene histone cluster 1, H2ag
Gm44486 13 22042545 to 22042682 137 + miRNA gene predicted gene, 44486
Cpgi5342 13 22042908 to 22043247 339 CpG island CpG island 5342
Tssr121690 13 22042951 to 22042978 27 - TSS region transcription start site region 121690
Tssr118818 13 22043189 to 22043208 19 + TSS region transcription start site region 118818
Hist1h2bj 13 22043230 to 22043658 428 + protein coding gene histone cluster 1, H2bj
Gm48356 13 22049514 to 22051450 1936 + unclassified gene predicted gene, 48356
Tssr118819 13 22049834 to 22049858 24 + TSS region transcription start site region 118819
Cpgi5343 13 22050656 to 22051331 675 CpG island CpG island 5343
n-TSgct5 13 22050686 to 22050767 81 - tRNA gene nuclear encoded tRNA serine 5 (anticodon GCT)
Vmn1r-ps92 13 22057346 to 22057862 516 - pseudogene vomeronasal 1 receptor, pseudogene 92
Vmn1r-ps93 13 22078253 to 22078684 431 + pseudogene vomeronasal 1 receptor, pseudogene 93
Gm11285 13 22083466 to 22083787 321 - pseudogene predicted gene 11285
Gm26300 13 22083541 to 22083634 93 - miRNA gene predicted gene, 26300
Vmn1r188 13 22087878 to 22088804 926 + protein coding gene vomeronasal 1 receptor 188
Vmn1r-ps94 13 22092154 to 22092589 435 + pseudogene vomeronasal 1 receptor, pseudogene 94
Vmn1r189 13 22101727 to 22102665 938 - protein coding gene vomeronasal 1 receptor 189
Vmn1r-ps95 13 22123295 to 22124193 898 + pseudogene vomeronasal 1 receptor, pseudogene 95
Vmn1r-ps96 13 22126770 to 22127037 267 + pseudogene vomeronasal 1 receptor, pseudogene 96
Vmn1r-ps97 13 22136424 to 22137025 601 - pseudogene vomeronasal 1 receptor, pseudogene 97
Vmn1r190-ps 13 22144441 to 22145343 902 - pseudogene vomeronasal 1 receptor 190, pseudogene
Vmn1r-ps98 13 22152362 to 22152727 365 + pseudogene vomeronasal 1 receptor, pseudogene 98
Gm11284 13 22163883 to 22165723 1840 - pseudogene predicted gene 11284
Vmn1r-ps99 13 22174829 to 22175594 765 - pseudogene vomeronasal 1 receptor, pseudogene 97
Vmn1r191 13 22178686 to 22179582 896 - protein coding gene vomeronasal 1 receptor 191
Vmn1r192 13 22187146 to 22188048 902 - protein coding gene vomeronasal 1 receptor 192
Gm25084 13 22204575 to 22204675 100 - miRNA gene predicted gene, 25084
Gm23282 13 22212419 to 22212519 100 - miRNA gene predicted gene, 23282
Vmn1r193 13 22218861 to 22219820 959 - protein coding gene vomeronasal 1 receptor 193
Vmn1r194 13 22244215 to 22245105 890 + protein coding gene vomeronasal 1 receptor 194
Vmn1r195 13 22278317 to 22279404 1087 + protein coding gene vomeronasal 1 receptor 195
Gm11295 13 22282354 to 22283548 1194 + pseudogene predicted gene 11295
Vmn1r196 13 22293193 to 22294098 905 + protein coding gene vomeronasal 1 receptor 196
Vmn1r-ps100 13 22298626 to 22299478 852 - pseudogene vomeronasal 1 receptor, pseudogene 100
Vmn1r197 13 22322191 to 22328807 6616 + protein coding gene vomeronasal 1 receptor 197
Gm48489 13 22336315 to 22336503 188 + pseudogene predicted gene, 48489
Vmn1r198 13 22350555 to 22355248 4693 + protein coding gene vomeronasal 1 receptor 198
Vmn1r-ps101 13 22370571 to 22370832 261 + pseudogene vomeronasal 1 receptor, pseudogene 101
Vmn1r199 13 22382538 to 22383641 1103 + protein coding gene vomeronasal 1 receptor 199
Vmn1r-ps102 13 22385649 to 22386534 885 + pseudogene vomeronasal 1 receptor, pseudogene 102
Vmn1r200 13 22395029 to 22395967 938 + protein coding gene vomeronasal 1 receptor 200
Vmn1r-ps103 13 22441272 to 22442164 892 + pseudogene vomeronasal 1 receptor, pseudogene 103
Vmn1r-ps104 13 22449641 to 22450359 718 + pseudogene vomeronasal 1 receptor, pseudogene 104
Gm11298 13 22464296 to 22467854 3558 + pseudogene predicted gene 11298
Vmn1r201 13 22474618 to 22475520 902 + protein coding gene vomeronasal 1 receptor 201
Vmn1r-ps106 13 22480701 to 22482465 1764 + pseudogene vomeronasal 1 receptor, pseudogene 106
Vmn1r-ps107 13 22491605 to 22492185 580 + pseudogene vomeronasal 1 receptor, pseudogene 107
Vmn1r-ps108 13 22496065 to 22496418 353 + pseudogene vomeronasal 1 receptor, pseudogene 108
Vmn1r202 13 22501337 to 22502245 908 - protein coding gene vomeronasal 1 receptor 202
Gm11300 13 22523911 to 22524744 833 - antisense lncRNA gene predicted gene 11300
Vmn1r203 13 22524051 to 22524986 935 + protein coding gene vomeronasal 1 receptor 203
Vmn1r204 13 22556201 to 22557109 908 + protein coding gene vomeronasal 1 receptor 204
Vmn1r205 13 22591980 to 22592930 950 - protein coding gene vomeronasal 1 receptor 205
Vmn1r206 13 22620097 to 22621035 938 - protein coding gene vomeronasal 1 receptor 206
Vmn1r-ps109 13 22625758 to 22626482 724 - pseudogene vomeronasal 1 receptor, pseudogene 109
Vmn1r-ps110 13 22628071 to 22629164 1093 - pseudogene vomeronasal 1 receptor, pseudogene 110
Gm11307 13 22675696 to 22676959 1263 + pseudogene predicted gene 11307
Vmn1r-ps111 13 22691042 to 22691966 924 - pseudogene vomeronasal 1 receptor, pseudogene 111
Gm11309 13 22691299 to 22714987 23688 + antisense lncRNA gene predicted gene 11309
Vmn1r207-ps 13 22725684 to 22726622 938 - pseudogene vomeronasal 1 receptor 207, pseudogene
Vmn1r-ps112 13 22733090 to 22733633 543 - pseudogene vomeronasal 1 receptor, pseudogene 112
Vmn1r-ps113 13 22736988 to 22738093 1105 - pseudogene vomeronasal 1 receptor, pseudogene 113
Gm11313 13 22758927 to 22759358 431 + pseudogene predicted gene 11313
Vmn1r208 13 22772399 to 22773325 926 - protein coding gene vomeronasal 1 receptor 208
Gm11314 13 22772656 to 22773471 815 + antisense lncRNA gene predicted gene 11314
Vmn1r209 13 22805580 to 22806518 938 - protein coding gene vomeronasal 1 receptor 209
Vmn1r210 13 22827194 to 22828114 920 - protein coding gene vomeronasal 1 receptor 210
Vmn1r-ps114 13 22844994 to 22846033 1039 - pseudogene vomeronasal 1 receptor, pseudogene 114
Vmn1r211 13 22851599 to 22852495 896 - protein coding gene vomeronasal 1 receptor 211
Vmn1r-ps115 13 22866640 to 22866806 166 + pseudogene vomeronasal 1 receptor, pseudogene 115