Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:21916788-22026860

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50 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
n-TRtct3 13 21917162 to 21917247 85 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon TCT)
Cpgi5334 13 21918773 to 21919312 539 CpG island CpG island 5334
n-TSaga5 13 21919215 to 21919296 81 + tRNA gene nuclear encoded tRNA serine 5 (anticodon AGA)
n-TQctg10 13 21920200 to 21920271 71 + tRNA gene nuclear encoded tRNA glutamine 10 (anticodon CTG)
Gm44456 13 21924928 to 21925016 88 - miRNA gene predicted gene, 44456
n-TStga2 13 21924935 to 21925016 81 - tRNA gene nuclear encoded tRNA serine 2 (anticodon TGA)
D13Mit135 13 21926206 to 21926353 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 135
n-TSaga6 13 21927857 to 21927938 81 + tRNA gene nuclear encoded tRNA serine 6 (anticodon AGA)
n-TMcat10 13 21931169 to 21931240 71 - tRNA gene nuclear encoded tRNA methionine 10 (anticodon CAT)
n-TQctg8 13 21933961 to 21934032 71 - tRNA gene nuclear encoded tRNA glutamine 8 (anticodon CTG)
Tssr118806 13 21935421 to 21935424 3 + TSS region transcription start site region 118806
n-TDgtc13 13 21935497 to 21935568 71 - tRNA gene nuclear encoded tRNA aspartic acid 13 (anticodon GTC)
Tssr118807 13 21936187 to 21936191 4 + TSS region transcription start site region 118807
n-TSaga1 13 21937094 to 21937175 81 - tRNA gene nuclear encoded tRNA serine 1 (anticodon AGA)
n-TDgtc12 13 21940319 to 21940390 71 - tRNA gene nuclear encoded tRNA aspartic acid 12 (anticodon GTC)
Gm11280 13 21940374 to 21945197 4823 - bidirectional promoter lncRNA gene predicted gene 11280
n-TSaga8 13 21940914 to 21940995 81 - tRNA gene nuclear encoded tRNA serine 8 (anticodon AGA)
Cpgi5335 13 21944894 to 21945785 891 CpG island CpG island 5335
Zfp184 13 21944937 to 21960489 15552 + protein coding gene zinc finger protein 184 (Kruppel-like)
Tssr118808 13 21945084 to 21945140 56 + TSS region transcription start site region 118808
Gm11281 13 21953053 to 21953628 575 - pseudogene predicted gene 11281
Gm11282 13 21957023 to 21958123 1100 - pseudogene predicted gene 11282
n-TKttt22 13 21971788 to 21971860 72 + tRNA gene nuclear encoded tRNA lysine 22 (anticodon TTT)
n-TMcat8 13 21975032 to 21975103 71 + tRNA gene nuclear encoded tRNA methionine 8 (anticodon CAT)
Cpgi5336 13 21981063 to 21982087 1024 CpG island CpG island 5336
Tssr118809 13 21981190 to 21981204 14 + TSS region transcription start site region 118809
Pom121l2 13 21981194 to 21988734 7540 + protein coding gene POM121 membrane glycoprotein-like 2 (rat)
Tssr118810 13 21981218 to 21981223 5 + TSS region transcription start site region 118810
Tssr118811 13 21981452 to 21981504 52 + TSS region transcription start site region 118811
Tssr118812 13 21981517 to 21981522 5 + TSS region transcription start site region 118812
Tssr121682 13 21983574 to 21983581 7 - TSS region transcription start site region 121682
n-TSgct8 13 21994190 to 21994271 81 - tRNA gene nuclear encoded tRNA serine 8 (anticodon GCT)
n-TQctg1 13 21996581 to 21996652 71 - tRNA gene nuclear encoded tRNA glutamine 1 (anticodon CTG)
Prss16 13 22002176 to 22009741 7565 - protein coding gene protease, serine 16 (thymus)
Cpgi5337 13 22005824 to 22007356 1532 CpG island CpG island 5337
Tssr121683 13 22006405 to 22006417 12 - TSS region transcription start site region 121683
Tssr121684 13 22006425 to 22006447 22 - TSS region transcription start site region 121684
Tssr118813 13 22006532 to 22006550 18 + TSS region transcription start site region 118813
Tssr118814 13 22006564 to 22006574 10 + TSS region transcription start site region 118814
Tssr118815 13 22006589 to 22006602 13 + TSS region transcription start site region 118815
Tssr121685 13 22009713 to 22009724 11 - TSS region transcription start site region 121685
Tssr121686 13 22009730 to 22009749 19 - TSS region transcription start site region 121686
Tssr121687 13 22009757 to 22009771 14 - TSS region transcription start site region 121687
Gm11290 13 22014468 to 22020738 6270 + lincRNA gene predicted gene 11290
n-TVaac3 13 22015791 to 22015863 72 - tRNA gene nuclear encoded tRNA valine 3 (anticodon AAC)
Cpgi5338 13 22019927 to 22020333 406 CpG island CpG island 5338
n-TRacg1 13 22021144 to 22021216 72 - tRNA gene nuclear encoded tRNA arginine 1 (anticodon ACG)
n-TScga1 13 22022419 to 22022500 81 - tRNA gene nuclear encoded tRNA serine 1 (anticodon CGA)
n-TVcac8 13 22026548 to 22026620 72 + tRNA gene nuclear encoded tRNA valine 8 (anticodon CAC)
Gm11292 13 22026699 to 22032196 5497 + unclassified non-coding RNA gene predicted gene 11292