Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:21818829-21989762

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm46403 13 21813170 to 21819385 6215 + protein coding gene predicted gene, 46403
Hist1h4n 13 21831793 to 21832158 365 - protein coding gene histone cluster 1, H4n
Tssr121679 13 21832194 to 21832198 4 - TSS region transcription start site region 121679
Hist1h2ap 13 21833024 to 21833475 451 - protein coding gene histone cluster 1, H2ap
Gm44466 13 21833093 to 21833230 137 + miRNA gene predicted gene, 44466
Tssr118798 13 21833736 to 21833751 15 + TSS region transcription start site region 118798
Hist1h2br 13 21833743 to 21837530 3787 + protein coding gene histone cluster 1 H2br
n-TLtaa2 13 21848022 to 21848104 82 - tRNA gene nuclear encoded tRNA leucine 2 (anticodon TAA)
n-TIaat11 13 21855320 to 21855393 73 - tRNA gene nuclear encoded tRNA isoleucine 11 (anticodon AAT)
n-TTagt4 13 21856021 to 21856094 73 + tRNA gene nuclear encoded tRNA threonine 4 (anticodon AGT)
Tssr118799 13 21865842 to 21865851 9 + TSS region transcription start site region 118799
Tssr118800 13 21866302 to 21866310 8 + TSS region transcription start site region 118800
Gm11278 13 21875233 to 21876229 996 - pseudogene predicted gene 11278
Tssr118801 13 21878201 to 21878204 3 + TSS region transcription start site region 118801
n-TIaat10 13 21882033 to 21882106 73 - tRNA gene nuclear encoded tRNA isoleucine 10 (anticodon AAT)
n-TFgaa1 13 21882885 to 21882957 72 - tRNA gene nuclear encoded tRNA pheylalanine 1 (anticodon GAA)
Cpgi5333 13 21896903 to 21897096 193 CpG island CpG island 5333
Mir1983 13 21896918 to 21897049 131 - miRNA gene microRNA 1983
n-TItat14 13 21896938 to 21897031 93 - tRNA gene nuclear encoded tRNA isoleucine 14 (anticodon TAT)
Tssr118802 13 21897186 to 21897198 12 + TSS region transcription start site region 118802
Tssr121680 13 21897528 to 21897535 7 - TSS region transcription start site region 121680
Tssr121681 13 21901113 to 21901116 3 - TSS region transcription start site region 121681
Gm11279 13 21903829 to 21904762 933 + pseudogene predicted gene 11279
n-TMcat2 13 21907111 to 21907182 71 + tRNA gene nuclear encoded tRNA methionine 2 (anticodon CAT)
n-TKttt23 13 21907940 to 21908012 72 + tRNA gene nuclear encoded tRNA lysine 23 (anticodon TTT)
Gm40831 13 21910872 to 21912358 1486 + lncRNA gene predicted gene, 40831
Tssr118803 13 21910921 to 21910931 10 + TSS region transcription start site region 118803
Tssr118804 13 21910939 to 21910949 10 + TSS region transcription start site region 118804
Tssr118805 13 21910966 to 21910975 9 + TSS region transcription start site region 118805
n-TDgtc11 13 21911313 to 21911384 71 + tRNA gene nuclear encoded tRNA aspartic acid 11 (anticodon GTC)
n-TLcaa2 13 21914838 to 21914943 105 + tRNA gene nuclear encoded tRNA leucine 2 (anticodon CAA)
n-TRtct3 13 21917162 to 21917247 85 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon TCT)
Cpgi5334 13 21918773 to 21919312 539 CpG island CpG island 5334
n-TSaga5 13 21919215 to 21919296 81 + tRNA gene nuclear encoded tRNA serine 5 (anticodon AGA)
n-TQctg10 13 21920200 to 21920271 71 + tRNA gene nuclear encoded tRNA glutamine 10 (anticodon CTG)
Gm44456 13 21924928 to 21925016 88 - miRNA gene predicted gene, 44456
n-TStga2 13 21924935 to 21925016 81 - tRNA gene nuclear encoded tRNA serine 2 (anticodon TGA)
D13Mit135 13 21926206 to 21926353 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 135
n-TSaga6 13 21927857 to 21927938 81 + tRNA gene nuclear encoded tRNA serine 6 (anticodon AGA)
n-TMcat10 13 21931169 to 21931240 71 - tRNA gene nuclear encoded tRNA methionine 10 (anticodon CAT)
n-TQctg8 13 21933961 to 21934032 71 - tRNA gene nuclear encoded tRNA glutamine 8 (anticodon CTG)
Tssr118806 13 21935421 to 21935424 3 + TSS region transcription start site region 118806
n-TDgtc13 13 21935497 to 21935568 71 - tRNA gene nuclear encoded tRNA aspartic acid 13 (anticodon GTC)
Tssr118807 13 21936187 to 21936191 4 + TSS region transcription start site region 118807
n-TSaga1 13 21937094 to 21937175 81 - tRNA gene nuclear encoded tRNA serine 1 (anticodon AGA)
n-TDgtc12 13 21940319 to 21940390 71 - tRNA gene nuclear encoded tRNA aspartic acid 12 (anticodon GTC)
Gm11280 13 21940374 to 21945197 4823 - bidirectional promoter lncRNA gene predicted gene 11280
n-TSaga8 13 21940914 to 21940995 81 - tRNA gene nuclear encoded tRNA serine 8 (anticodon AGA)
Cpgi5335 13 21944894 to 21945785 891 CpG island CpG island 5335
Zfp184 13 21944937 to 21960489 15552 + protein coding gene zinc finger protein 184 (Kruppel-like)
Tssr118808 13 21945084 to 21945140 56 + TSS region transcription start site region 118808
Gm11281 13 21953053 to 21953628 575 - pseudogene predicted gene 11281
Gm11282 13 21957023 to 21958123 1100 - pseudogene predicted gene 11282
n-TKttt22 13 21971788 to 21971860 72 + tRNA gene nuclear encoded tRNA lysine 22 (anticodon TTT)
n-TMcat8 13 21975032 to 21975103 71 + tRNA gene nuclear encoded tRNA methionine 8 (anticodon CAT)
Cpgi5336 13 21981063 to 21982087 1024 CpG island CpG island 5336
Tssr118809 13 21981190 to 21981204 14 + TSS region transcription start site region 118809
Pom121l2 13 21981194 to 21988734 7540 + protein coding gene POM121 membrane glycoprotein-like 2 (rat)
Tssr118810 13 21981218 to 21981223 5 + TSS region transcription start site region 118810
Tssr118811 13 21981452 to 21981504 52 + TSS region transcription start site region 118811
Tssr118812 13 21981517 to 21981522 5 + TSS region transcription start site region 118812
Tssr121682 13 21983574 to 21983581 7 - TSS region transcription start site region 121682