Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:21785084-22105140

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126 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hist1h2an 13 21786826 to 21787218 392 - protein coding gene histone cluster 1, H2an
Gm44346 13 21786875 to 21787015 140 + miRNA gene predicted gene, 44346
Cpgi5332 13 21787194 to 21787551 357 CpG island CpG island 5332
Tssr121677 13 21787241 to 21787256 15 - TSS region transcription start site region 121677
Hist1h2bp 13 21787461 to 21789213 1752 + protein coding gene histone cluster 1, H2bp
Tssr118794 13 21787480 to 21787494 14 + TSS region transcription start site region 118794
n-Tsta1 13 21795799 to 21795881 82 + tRNA gene nuclear encoded tRNA suppressor ta1 (anticodon TTA)
Hist1h2bq 13 21806612 to 21810197 3585 - protein coding gene histone cluster 1, H2bq
Tssr121678 13 21810190 to 21810200 10 - TSS region transcription start site region 121678
Tssr118795 13 21810428 to 21810442 14 + TSS region transcription start site region 118795
Hist1h2ao 13 21810465 to 21810944 479 + protein coding gene histone cluster 1, H2ao
Gm19658 13 21810712 to 21810849 137 - miRNA gene predicted gene, 19658
Tssr118796 13 21811737 to 21811754 17 + TSS region transcription start site region 118796
Hist1h4m 13 21811746 to 21812147 401 + protein coding gene histone cluster 1, H4m
Tssr118797 13 21811760 to 21811766 6 + TSS region transcription start site region 118797
Gm46403 13 21813170 to 21819385 6215 + protein coding gene predicted gene, 46403
Hist1h4n 13 21831793 to 21832158 365 - protein coding gene histone cluster 1, H4n
Tssr121679 13 21832194 to 21832198 4 - TSS region transcription start site region 121679
Hist1h2ap 13 21833024 to 21833475 451 - protein coding gene histone cluster 1, H2ap
Gm44466 13 21833093 to 21833230 137 + miRNA gene predicted gene, 44466
Tssr118798 13 21833736 to 21833751 15 + TSS region transcription start site region 118798
Hist1h2br 13 21833743 to 21837530 3787 + protein coding gene histone cluster 1 H2br
n-TLtaa2 13 21848022 to 21848104 82 - tRNA gene nuclear encoded tRNA leucine 2 (anticodon TAA)
n-TIaat11 13 21855320 to 21855393 73 - tRNA gene nuclear encoded tRNA isoleucine 11 (anticodon AAT)
n-TTagt4 13 21856021 to 21856094 73 + tRNA gene nuclear encoded tRNA threonine 4 (anticodon AGT)
Tssr118799 13 21865842 to 21865851 9 + TSS region transcription start site region 118799
Tssr118800 13 21866302 to 21866310 8 + TSS region transcription start site region 118800
Gm11278 13 21875233 to 21876229 996 - pseudogene predicted gene 11278
Tssr118801 13 21878201 to 21878204 3 + TSS region transcription start site region 118801
n-TIaat10 13 21882033 to 21882106 73 - tRNA gene nuclear encoded tRNA isoleucine 10 (anticodon AAT)
n-TFgaa1 13 21882885 to 21882957 72 - tRNA gene nuclear encoded tRNA pheylalanine 1 (anticodon GAA)
Cpgi5333 13 21896903 to 21897096 193 CpG island CpG island 5333
Mir1983 13 21896918 to 21897049 131 - miRNA gene microRNA 1983
n-TItat14 13 21896938 to 21897031 93 - tRNA gene nuclear encoded tRNA isoleucine 14 (anticodon TAT)
Tssr118802 13 21897186 to 21897198 12 + TSS region transcription start site region 118802
Tssr121680 13 21897528 to 21897535 7 - TSS region transcription start site region 121680
Tssr121681 13 21901113 to 21901116 3 - TSS region transcription start site region 121681
Gm11279 13 21903829 to 21904762 933 + pseudogene predicted gene 11279
n-TMcat2 13 21907111 to 21907182 71 + tRNA gene nuclear encoded tRNA methionine 2 (anticodon CAT)
n-TKttt23 13 21907940 to 21908012 72 + tRNA gene nuclear encoded tRNA lysine 23 (anticodon TTT)
Gm40831 13 21910872 to 21912358 1486 + lncRNA gene predicted gene, 40831
Tssr118803 13 21910921 to 21910931 10 + TSS region transcription start site region 118803
Tssr118804 13 21910939 to 21910949 10 + TSS region transcription start site region 118804
Tssr118805 13 21910966 to 21910975 9 + TSS region transcription start site region 118805
n-TDgtc11 13 21911313 to 21911384 71 + tRNA gene nuclear encoded tRNA aspartic acid 11 (anticodon GTC)
n-TLcaa2 13 21914838 to 21914943 105 + tRNA gene nuclear encoded tRNA leucine 2 (anticodon CAA)
n-TRtct3 13 21917162 to 21917247 85 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon TCT)
Cpgi5334 13 21918773 to 21919312 539 CpG island CpG island 5334
n-TSaga5 13 21919215 to 21919296 81 + tRNA gene nuclear encoded tRNA serine 5 (anticodon AGA)
n-TQctg10 13 21920200 to 21920271 71 + tRNA gene nuclear encoded tRNA glutamine 10 (anticodon CTG)
Gm44456 13 21924928 to 21925016 88 - miRNA gene predicted gene, 44456
n-TStga2 13 21924935 to 21925016 81 - tRNA gene nuclear encoded tRNA serine 2 (anticodon TGA)
D13Mit135 13 21926206 to 21926353 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 135
n-TSaga6 13 21927857 to 21927938 81 + tRNA gene nuclear encoded tRNA serine 6 (anticodon AGA)
n-TMcat10 13 21931169 to 21931240 71 - tRNA gene nuclear encoded tRNA methionine 10 (anticodon CAT)
n-TQctg8 13 21933961 to 21934032 71 - tRNA gene nuclear encoded tRNA glutamine 8 (anticodon CTG)
Tssr118806 13 21935421 to 21935424 3 + TSS region transcription start site region 118806
n-TDgtc13 13 21935497 to 21935568 71 - tRNA gene nuclear encoded tRNA aspartic acid 13 (anticodon GTC)
Tssr118807 13 21936187 to 21936191 4 + TSS region transcription start site region 118807
n-TSaga1 13 21937094 to 21937175 81 - tRNA gene nuclear encoded tRNA serine 1 (anticodon AGA)
n-TDgtc12 13 21940319 to 21940390 71 - tRNA gene nuclear encoded tRNA aspartic acid 12 (anticodon GTC)
Gm11280 13 21940374 to 21945197 4823 - bidirectional promoter lncRNA gene predicted gene 11280
n-TSaga8 13 21940914 to 21940995 81 - tRNA gene nuclear encoded tRNA serine 8 (anticodon AGA)
Cpgi5335 13 21944894 to 21945785 891 CpG island CpG island 5335
Zfp184 13 21944937 to 21960489 15552 + protein coding gene zinc finger protein 184 (Kruppel-like)
Tssr118808 13 21945084 to 21945140 56 + TSS region transcription start site region 118808
Gm11281 13 21953053 to 21953628 575 - pseudogene predicted gene 11281
Gm11282 13 21957023 to 21958123 1100 - pseudogene predicted gene 11282
n-TKttt22 13 21971788 to 21971860 72 + tRNA gene nuclear encoded tRNA lysine 22 (anticodon TTT)
n-TMcat8 13 21975032 to 21975103 71 + tRNA gene nuclear encoded tRNA methionine 8 (anticodon CAT)
Cpgi5336 13 21981063 to 21982087 1024 CpG island CpG island 5336
Tssr118809 13 21981190 to 21981204 14 + TSS region transcription start site region 118809
Pom121l2 13 21981194 to 21988734 7540 + protein coding gene POM121 membrane glycoprotein-like 2 (rat)
Tssr118810 13 21981218 to 21981223 5 + TSS region transcription start site region 118810
Tssr118811 13 21981452 to 21981504 52 + TSS region transcription start site region 118811
Tssr118812 13 21981517 to 21981522 5 + TSS region transcription start site region 118812
Tssr121682 13 21983574 to 21983581 7 - TSS region transcription start site region 121682
n-TSgct8 13 21994190 to 21994271 81 - tRNA gene nuclear encoded tRNA serine 8 (anticodon GCT)
n-TQctg1 13 21996581 to 21996652 71 - tRNA gene nuclear encoded tRNA glutamine 1 (anticodon CTG)
Prss16 13 22002176 to 22009741 7565 - protein coding gene protease, serine 16 (thymus)
Cpgi5337 13 22005824 to 22007356 1532 CpG island CpG island 5337
Tssr121683 13 22006405 to 22006417 12 - TSS region transcription start site region 121683
Tssr121684 13 22006425 to 22006447 22 - TSS region transcription start site region 121684
Tssr118813 13 22006532 to 22006550 18 + TSS region transcription start site region 118813
Tssr118814 13 22006564 to 22006574 10 + TSS region transcription start site region 118814
Tssr118815 13 22006589 to 22006602 13 + TSS region transcription start site region 118815
Tssr121685 13 22009713 to 22009724 11 - TSS region transcription start site region 121685
Tssr121686 13 22009730 to 22009749 19 - TSS region transcription start site region 121686
Tssr121687 13 22009757 to 22009771 14 - TSS region transcription start site region 121687
Gm11290 13 22014468 to 22020738 6270 + lincRNA gene predicted gene 11290
n-TVaac3 13 22015791 to 22015863 72 - tRNA gene nuclear encoded tRNA valine 3 (anticodon AAC)
Cpgi5338 13 22019927 to 22020333 406 CpG island CpG island 5338
n-TRacg1 13 22021144 to 22021216 72 - tRNA gene nuclear encoded tRNA arginine 1 (anticodon ACG)
n-TScga1 13 22022419 to 22022500 81 - tRNA gene nuclear encoded tRNA serine 1 (anticodon CGA)
n-TVcac8 13 22026548 to 22026620 72 + tRNA gene nuclear encoded tRNA valine 8 (anticodon CAC)
Gm11292 13 22026699 to 22032196 5497 + unclassified non-coding RNA gene predicted gene 11292
Cpgi5339 13 22028649 to 22029311 662 CpG island CpG island 5339
n-TIaat7 13 22029223 to 22029296 73 + tRNA gene nuclear encoded tRNA isoleucine 7 (anticodon AAT)
n-TTagt1 13 22030100 to 22030173 73 - tRNA gene nuclear encoded tRNA threonine 1 (anticodon AGT)
Gm44390 13 22035164 to 22035307 143 + miRNA gene predicted gene, 44390
Hist1h2ah 13 22035164 to 22035568 404 - protein coding gene histone cluster 1, H2ah
Cpgi5340 13 22035529 to 22035900 371 CpG island CpG island 5340
Tssr121688 13 22035589 to 22035606 17 - TSS region transcription start site region 121688
Tssr118816 13 22035829 to 22035848 19 + TSS region transcription start site region 118816
Hist1h2bk 13 22035870 to 22036345 475 + protein coding gene histone cluster 1, H2bk
Tssr118817 13 22035870 to 22035874 4 + TSS region transcription start site region 118817
Cpgi5341 13 22040909 to 22041468 559 CpG island CpG island 5341
Hist1h4i 13 22040960 to 22041362 402 - protein coding gene histone cluster 1, H4i
Tssr121689 13 22041357 to 22041363 6 - TSS region transcription start site region 121689
Hist1h2ag 13 22042478 to 22042949 471 - protein coding gene histone cluster 1, H2ag
Gm44486 13 22042545 to 22042682 137 + miRNA gene predicted gene, 44486
Cpgi5342 13 22042908 to 22043247 339 CpG island CpG island 5342
Tssr121690 13 22042951 to 22042978 27 - TSS region transcription start site region 121690
Tssr118818 13 22043189 to 22043208 19 + TSS region transcription start site region 118818
Hist1h2bj 13 22043230 to 22043658 428 + protein coding gene histone cluster 1, H2bj
Gm48356 13 22049514 to 22051450 1936 + unclassified gene predicted gene, 48356
Tssr118819 13 22049834 to 22049858 24 + TSS region transcription start site region 118819
Cpgi5343 13 22050656 to 22051331 675 CpG island CpG island 5343
n-TSgct5 13 22050686 to 22050767 81 - tRNA gene nuclear encoded tRNA serine 5 (anticodon GCT)
Vmn1r-ps92 13 22057346 to 22057862 516 - pseudogene vomeronasal 1 receptor, pseudogene 92
Vmn1r-ps93 13 22078253 to 22078684 431 + pseudogene vomeronasal 1 receptor, pseudogene 93
Gm11285 13 22083466 to 22083787 321 - pseudogene predicted gene 11285
Gm26300 13 22083541 to 22083634 93 - miRNA gene predicted gene, 26300
Vmn1r188 13 22087878 to 22088804 926 + protein coding gene vomeronasal 1 receptor 188
Vmn1r-ps94 13 22092154 to 22092589 435 + pseudogene vomeronasal 1 receptor, pseudogene 94
Vmn1r189 13 22101727 to 22102665 938 - protein coding gene vomeronasal 1 receptor 189