MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 13:21465218-21525260

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Nkapl	13	21467047 to 21468501	1454	-	protein coding gene	NFKB activating protein-like
Cpgi5321	13	21468036 to 21468772	736		CpG island	CpG island 5321
Tssr121660	13	21468463 to 21468473	10	-	TSS region	transcription start site region 121660
Tssr121661	13	21468474 to 21468508	34	-	TSS region	transcription start site region 121661
Tssr121662	13	21468510 to 21468551	41	-	TSS region	transcription start site region 121662
Gm40828	13	21477617 to 21478791	1174	-	lncRNA gene	predicted gene, 40828
Zkscan4	13	21478907 to 21485507	6600	+	protein coding gene	zinc finger with KRAB and SCAN domains 4
Gm10065	13	21479097 to 21479441	344	-	protein coding gene	predicted gene 10065
Gm23779	13	21486338 to 21486401	63	-	snRNA gene	predicted gene, 23779
n-TSgct2	13	21492845 to 21492926	81	-	tRNA gene	nuclear encoded tRNA serine 2 (anticodon GCT)
Tssr118782	13	21495218 to 21495260	42	+	TSS region	transcription start site region 118782
AK157302	13	21495223 to 21497137	1914	+	protein coding gene	cDNA sequence AK157302
Tssr118783	13	21495357 to 21495381	24	+	TSS region	transcription start site region 118783
Gm11273	13	21501029 to 21501418	389	-	protein coding gene	predicted gene 11273
Tssr121663	13	21501448 to 21501458	10	-	TSS region	transcription start site region 121663
Zfp389	13	21504316 to 21506524	2208	-	pseudogene	zinc finger protein 389
Cpgi5322	13	21506292 to 21506588	296		CpG island	CpG island 5322
Zkscan8	13	21513221 to 21531114	17893	-	protein coding gene	zinc finger with KRAB and SCAN domains 8