MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 13:21351578-21441638

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Tssr118777	13	21356896 to 21356905	9	+	TSS region	transcription start site region 118777
Cpgi5317	13	21362744 to 21363043	299		CpG island	CpG island 5317
Zscan12	13	21362820 to 21372289	9469	+	protein coding gene	zinc finger and SCAN domain containing 12
Tssr118778	13	21362826 to 21362883	57	+	TSS region	transcription start site region 118778
Tssr118779	13	21362897 to 21362922	25	+	TSS region	transcription start site region 118779
Tssr118780	13	21362929 to 21362937	8	+	TSS region	transcription start site region 118780
Gm11271	13	21380691 to 21381130	439	-	pseudogene	predicted gene 11271
Zkscan3	13	21387004 to 21402755	15751	-	protein coding gene	zinc finger with KRAB and SCAN domains 3
Mir6942	13	21396578 to 21396638	60	-	miRNA gene	microRNA 6942
Tssr121653	13	21401857 to 21401863	6	-	TSS region	transcription start site region 121653
Cpgi5318	13	21402445 to 21402815	370		CpG island	CpG island 5318
Tssr121654	13	21402688 to 21402748	60	-	TSS region	transcription start site region 121654
Tssr118781	13	21416020 to 21416024	4	+	TSS region	transcription start site region 118781
Pgbd1	13	21421275 to 21441053	19778	-	protein coding gene	piggyBac transposable element derived 1
Cpgi5319	13	21440669 to 21441282	613		CpG island	CpG island 5319
Tssr121655	13	21440691 to 21440713	22	-	TSS region	transcription start site region 121655
Tssr121656	13	21441044 to 21441069	25	-	TSS region	transcription start site region 121656
4930470G03Rik	13	21441329 to 21442803	1474	+	bidirectional promoter lncRNA gene	RIKEN cDNA 4930470G03 gene