Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:21340709-21721253

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Olfr1367 13 21346930 to 21347880 950 + protein coding gene olfactory receptor 1367
Tssr118777 13 21356896 to 21356905 9 + TSS region transcription start site region 118777
Cpgi5317 13 21362744 to 21363043 299 CpG island CpG island 5317
Zscan12 13 21362820 to 21372289 9469 + protein coding gene zinc finger and SCAN domain containing 12
Tssr118778 13 21362826 to 21362883 57 + TSS region transcription start site region 118778
Tssr118779 13 21362897 to 21362922 25 + TSS region transcription start site region 118779
Tssr118780 13 21362929 to 21362937 8 + TSS region transcription start site region 118780
Gm11271 13 21380691 to 21381130 439 - pseudogene predicted gene 11271
Zkscan3 13 21387004 to 21402755 15751 - protein coding gene zinc finger with KRAB and SCAN domains 3
Mir6942 13 21396578 to 21396638 60 - miRNA gene microRNA 6942
Tssr121653 13 21401857 to 21401863 6 - TSS region transcription start site region 121653
Cpgi5318 13 21402445 to 21402815 370 CpG island CpG island 5318
Tssr121654 13 21402688 to 21402748 60 - TSS region transcription start site region 121654
Tssr118781 13 21416020 to 21416024 4 + TSS region transcription start site region 118781
Pgbd1 13 21421275 to 21441053 19778 - protein coding gene piggyBac transposable element derived 1
Cpgi5319 13 21440669 to 21441282 613 CpG island CpG island 5319
Tssr121655 13 21440691 to 21440713 22 - TSS region transcription start site region 121655
Tssr121656 13 21441044 to 21441069 25 - TSS region transcription start site region 121656
4930470G03Rik 13 21441329 to 21442803 1474 + bidirectional promoter lncRNA gene RIKEN cDNA 4930470G03 gene
Zscan26 13 21442180 to 21453730 11550 - protein coding gene zinc finger and SCAN domain containing 26
Mir1896 13 21445160 to 21445240 80 + miRNA gene microRNA 1896
Tssr121657 13 21447238 to 21447246 8 - TSS region transcription start site region 121657
Cpgi5320 13 21453429 to 21453871 442 CpG island CpG island 5320
Tssr121658 13 21453669 to 21453700 31 - TSS region transcription start site region 121658
Tssr121659 13 21453714 to 21453761 47 - TSS region transcription start site region 121659
Nkapl 13 21467047 to 21468501 1454 - protein coding gene NFKB activating protein-like
Cpgi5321 13 21468036 to 21468772 736 CpG island CpG island 5321
Tssr121660 13 21468463 to 21468473 10 - TSS region transcription start site region 121660
Tssr121661 13 21468474 to 21468508 34 - TSS region transcription start site region 121661
Tssr121662 13 21468510 to 21468551 41 - TSS region transcription start site region 121662
Gm40828 13 21477617 to 21478791 1174 - lncRNA gene predicted gene, 40828
Zkscan4 13 21478907 to 21485507 6600 + protein coding gene zinc finger with KRAB and SCAN domains 4
Gm10065 13 21479097 to 21479441 344 - protein coding gene predicted gene 10065
Gm23779 13 21486338 to 21486401 63 - snRNA gene predicted gene, 23779
n-TSgct2 13 21492845 to 21492926 81 - tRNA gene nuclear encoded tRNA serine 2 (anticodon GCT)
Tssr118782 13 21495218 to 21495260 42 + TSS region transcription start site region 118782
AK157302 13 21495223 to 21497137 1914 + protein coding gene cDNA sequence AK157302
Tssr118783 13 21495357 to 21495381 24 + TSS region transcription start site region 118783
Gm11273 13 21501029 to 21501418 389 - protein coding gene predicted gene 11273
Tssr121663 13 21501448 to 21501458 10 - TSS region transcription start site region 121663
Zfp389 13 21504316 to 21506524 2208 - pseudogene zinc finger protein 389
Cpgi5322 13 21506292 to 21506588 296 CpG island CpG island 5322
Zkscan8 13 21513221 to 21531114 17893 - protein coding gene zinc finger with KRAB and SCAN domains 8
Cpgi5323 13 21530709 to 21531253 544 CpG island CpG island 5323
Tssr121664 13 21531048 to 21531083 35 - TSS region transcription start site region 121664
Gm32724 13 21531069 to 21558701 27632 + lncRNA gene predicted gene, 32724
Tssr121665 13 21531084 to 21531103 19 - TSS region transcription start site region 121665
Olfr1366 13 21536974 to 21538027 1053 - protein coding gene olfactory receptor 1366
Olfr1535 13 21555040 to 21556020 980 - protein coding gene olfactory receptor 1535
Olfr1364 13 21573510 to 21574454 944 - protein coding gene olfactory receptor 1364
Olfr1362 13 21611020 to 21612004 984 - protein coding gene olfactory receptor 1362
Olfr11 13 21638580 to 21639521 941 - protein coding gene olfactory receptor 11
Olfr1361 13 21658368 to 21664523 6155 - protein coding gene olfactory receptor 1361
Olfr1360 13 21674001 to 21674980 979 - protein coding gene olfactory receptor 1360
Olfr1359 13 21703003 to 21703944 941 + protein coding gene olfactory receptor 1359
n-TGgcc7 13 21710580 to 21710650 70 + tRNA gene nuclear encoded tRNA glycine 7 (anticodon GCC)
n-TMcat7 13 21710994 to 21711065 71 + tRNA gene nuclear encoded tRNA methionine 7 (anticodon CAT)
Hist1h2bl 13 21715763 to 21716143 380 - protein coding gene histone cluster 1, H2bl
Cpgi5324 13 21716115 to 21716452 337 CpG island CpG island 5324
Tssr121666 13 21716175 to 21716189 14 - TSS region transcription start site region 121666
Tssr118784 13 21716385 to 21716401 16 + TSS region transcription start site region 118784
Hist1h2ai 13 21716422 to 21716814 392 + protein coding gene histone cluster 1, H2ai
Gm44367 13 21716667 to 21716804 137 - miRNA gene predicted gene, 44367
Cpgi5325 13 21717506 to 21717682 176 CpG island CpG island 5325
Tssr118785 13 21717626 to 21717631 5 + TSS region transcription start site region 118785
Hist1h3h 13 21717659 to 21718069 410 + protein coding gene histone cluster 1, H3h