Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:21293429-21613871

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D13Mit17 13 21293266 to 21293433 167 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 17
Tssr121652 13 21293456 to 21293460 4 - TSS region transcription start site region 121652
Tssr118770 13 21293860 to 21293899 39 + TSS region transcription start site region 118770
Tssr118771 13 21295508 to 21295533 25 + TSS region transcription start site region 118771
Gm11270 13 21296248 to 21296718 470 - pseudogene predicted gene 11270
Gpx6 13 21312125 to 21319624 7499 + protein coding gene glutathione peroxidase 6
Tssr118772 13 21312178 to 21312187 9 + TSS region transcription start site region 118772
Tssr118773 13 21312198 to 21312220 22 + TSS region transcription start site region 118773
Tssr118774 13 21312223 to 21312236 13 + TSS region transcription start site region 118774
Tssr118775 13 21317208 to 21317247 39 + TSS region transcription start site region 118775
Tssr118776 13 21317254 to 21317261 7 + TSS region transcription start site region 118776
n-TTcgt4 13 21322813 to 21322886 73 + tRNA gene nuclear encoded tRNA threonine 4 (anticodon CGT)
n-TMcat13 13 21326717 to 21326789 72 - tRNA gene nuclear encoded tRNA methionine 13 (anticodon CAT)
Cpgi5316 13 21326901 to 21327182 281 CpG island CpG island 5316
Olfr1367 13 21346930 to 21347880 950 + protein coding gene olfactory receptor 1367
Tssr118777 13 21356896 to 21356905 9 + TSS region transcription start site region 118777
Cpgi5317 13 21362744 to 21363043 299 CpG island CpG island 5317
Zscan12 13 21362820 to 21372289 9469 + protein coding gene zinc finger and SCAN domain containing 12
Tssr118778 13 21362826 to 21362883 57 + TSS region transcription start site region 118778
Tssr118779 13 21362897 to 21362922 25 + TSS region transcription start site region 118779
Tssr118780 13 21362929 to 21362937 8 + TSS region transcription start site region 118780
Gm11271 13 21380691 to 21381130 439 - pseudogene predicted gene 11271
Zkscan3 13 21387004 to 21402755 15751 - protein coding gene zinc finger with KRAB and SCAN domains 3
Mir6942 13 21396578 to 21396638 60 - miRNA gene microRNA 6942
Tssr121653 13 21401857 to 21401863 6 - TSS region transcription start site region 121653
Cpgi5318 13 21402445 to 21402815 370 CpG island CpG island 5318
Tssr121654 13 21402688 to 21402748 60 - TSS region transcription start site region 121654
Tssr118781 13 21416020 to 21416024 4 + TSS region transcription start site region 118781
Pgbd1 13 21421275 to 21441053 19778 - protein coding gene piggyBac transposable element derived 1
Cpgi5319 13 21440669 to 21441282 613 CpG island CpG island 5319
Tssr121655 13 21440691 to 21440713 22 - TSS region transcription start site region 121655
Tssr121656 13 21441044 to 21441069 25 - TSS region transcription start site region 121656
4930470G03Rik 13 21441329 to 21442803 1474 + bidirectional promoter lncRNA gene RIKEN cDNA 4930470G03 gene
Zscan26 13 21442180 to 21453730 11550 - protein coding gene zinc finger and SCAN domain containing 26
Mir1896 13 21445160 to 21445240 80 + miRNA gene microRNA 1896
Tssr121657 13 21447238 to 21447246 8 - TSS region transcription start site region 121657
Cpgi5320 13 21453429 to 21453871 442 CpG island CpG island 5320
Tssr121658 13 21453669 to 21453700 31 - TSS region transcription start site region 121658
Tssr121659 13 21453714 to 21453761 47 - TSS region transcription start site region 121659
Nkapl 13 21467047 to 21468501 1454 - protein coding gene NFKB activating protein-like
Cpgi5321 13 21468036 to 21468772 736 CpG island CpG island 5321
Tssr121660 13 21468463 to 21468473 10 - TSS region transcription start site region 121660
Tssr121661 13 21468474 to 21468508 34 - TSS region transcription start site region 121661
Tssr121662 13 21468510 to 21468551 41 - TSS region transcription start site region 121662
Gm40828 13 21477617 to 21478791 1174 - lncRNA gene predicted gene, 40828
Zkscan4 13 21478907 to 21485507 6600 + protein coding gene zinc finger with KRAB and SCAN domains 4
Gm10065 13 21479097 to 21479441 344 - protein coding gene predicted gene 10065
Gm23779 13 21486338 to 21486401 63 - snRNA gene predicted gene, 23779
n-TSgct2 13 21492845 to 21492926 81 - tRNA gene nuclear encoded tRNA serine 2 (anticodon GCT)
Tssr118782 13 21495218 to 21495260 42 + TSS region transcription start site region 118782
AK157302 13 21495223 to 21497137 1914 + protein coding gene cDNA sequence AK157302
Tssr118783 13 21495357 to 21495381 24 + TSS region transcription start site region 118783
Gm11273 13 21501029 to 21501418 389 - protein coding gene predicted gene 11273
Tssr121663 13 21501448 to 21501458 10 - TSS region transcription start site region 121663
Zfp389 13 21504316 to 21506524 2208 - pseudogene zinc finger protein 389
Cpgi5322 13 21506292 to 21506588 296 CpG island CpG island 5322
Zkscan8 13 21513221 to 21531114 17893 - protein coding gene zinc finger with KRAB and SCAN domains 8
Cpgi5323 13 21530709 to 21531253 544 CpG island CpG island 5323
Tssr121664 13 21531048 to 21531083 35 - TSS region transcription start site region 121664
Gm32724 13 21531069 to 21558701 27632 + lncRNA gene predicted gene, 32724
Tssr121665 13 21531084 to 21531103 19 - TSS region transcription start site region 121665
Olfr1366 13 21536974 to 21538027 1053 - protein coding gene olfactory receptor 1366
Olfr1535 13 21555040 to 21556020 980 - protein coding gene olfactory receptor 1535
Olfr1364 13 21573510 to 21574454 944 - protein coding gene olfactory receptor 1364
Olfr1362 13 21611020 to 21612004 984 - protein coding gene olfactory receptor 1362