Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:21293053-22613628

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278 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D13Mit17 13 21293266 to 21293433 167 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 17
Tssr121652 13 21293456 to 21293460 4 - TSS region transcription start site region 121652
Tssr118770 13 21293860 to 21293899 39 + TSS region transcription start site region 118770
Tssr118771 13 21295508 to 21295533 25 + TSS region transcription start site region 118771
Gm11270 13 21296248 to 21296718 470 - pseudogene predicted gene 11270
Gpx6 13 21312125 to 21319624 7499 + protein coding gene glutathione peroxidase 6
Tssr118772 13 21312178 to 21312187 9 + TSS region transcription start site region 118772
Tssr118773 13 21312198 to 21312220 22 + TSS region transcription start site region 118773
Tssr118774 13 21312223 to 21312236 13 + TSS region transcription start site region 118774
Tssr118775 13 21317208 to 21317247 39 + TSS region transcription start site region 118775
Tssr118776 13 21317254 to 21317261 7 + TSS region transcription start site region 118776
n-TTcgt4 13 21322813 to 21322886 73 + tRNA gene nuclear encoded tRNA threonine 4 (anticodon CGT)
n-TMcat13 13 21326717 to 21326789 72 - tRNA gene nuclear encoded tRNA methionine 13 (anticodon CAT)
Cpgi5316 13 21326901 to 21327182 281 CpG island CpG island 5316
Olfr1367 13 21346930 to 21347880 950 + protein coding gene olfactory receptor 1367
Tssr118777 13 21356896 to 21356905 9 + TSS region transcription start site region 118777
Cpgi5317 13 21362744 to 21363043 299 CpG island CpG island 5317
Zscan12 13 21362820 to 21372289 9469 + protein coding gene zinc finger and SCAN domain containing 12
Tssr118778 13 21362826 to 21362883 57 + TSS region transcription start site region 118778
Tssr118779 13 21362897 to 21362922 25 + TSS region transcription start site region 118779
Tssr118780 13 21362929 to 21362937 8 + TSS region transcription start site region 118780
Gm11271 13 21380691 to 21381130 439 - pseudogene predicted gene 11271
Zkscan3 13 21387004 to 21402755 15751 - protein coding gene zinc finger with KRAB and SCAN domains 3
Mir6942 13 21396578 to 21396638 60 - miRNA gene microRNA 6942
Tssr121653 13 21401857 to 21401863 6 - TSS region transcription start site region 121653
Cpgi5318 13 21402445 to 21402815 370 CpG island CpG island 5318
Tssr121654 13 21402688 to 21402748 60 - TSS region transcription start site region 121654
Tssr118781 13 21416020 to 21416024 4 + TSS region transcription start site region 118781
Pgbd1 13 21421275 to 21441053 19778 - protein coding gene piggyBac transposable element derived 1
Cpgi5319 13 21440669 to 21441282 613 CpG island CpG island 5319
Tssr121655 13 21440691 to 21440713 22 - TSS region transcription start site region 121655
Tssr121656 13 21441044 to 21441069 25 - TSS region transcription start site region 121656
4930470G03Rik 13 21441329 to 21442803 1474 + bidirectional promoter lncRNA gene RIKEN cDNA 4930470G03 gene
Zscan26 13 21442180 to 21453730 11550 - protein coding gene zinc finger and SCAN domain containing 26
Mir1896 13 21445160 to 21445240 80 + miRNA gene microRNA 1896
Tssr121657 13 21447238 to 21447246 8 - TSS region transcription start site region 121657
Cpgi5320 13 21453429 to 21453871 442 CpG island CpG island 5320
Tssr121658 13 21453669 to 21453700 31 - TSS region transcription start site region 121658
Tssr121659 13 21453714 to 21453761 47 - TSS region transcription start site region 121659
Nkapl 13 21467047 to 21468501 1454 - protein coding gene NFKB activating protein-like
Cpgi5321 13 21468036 to 21468772 736 CpG island CpG island 5321
Tssr121660 13 21468463 to 21468473 10 - TSS region transcription start site region 121660
Tssr121661 13 21468474 to 21468508 34 - TSS region transcription start site region 121661
Tssr121662 13 21468510 to 21468551 41 - TSS region transcription start site region 121662
Gm40828 13 21477617 to 21478791 1174 - lncRNA gene predicted gene, 40828
Zkscan4 13 21478907 to 21485507 6600 + protein coding gene zinc finger with KRAB and SCAN domains 4
Gm10065 13 21479097 to 21479441 344 - protein coding gene predicted gene 10065
Gm23779 13 21486338 to 21486401 63 - snRNA gene predicted gene, 23779
n-TSgct2 13 21492845 to 21492926 81 - tRNA gene nuclear encoded tRNA serine 2 (anticodon GCT)
Tssr118782 13 21495218 to 21495260 42 + TSS region transcription start site region 118782
AK157302 13 21495223 to 21497137 1914 + protein coding gene cDNA sequence AK157302
Tssr118783 13 21495357 to 21495381 24 + TSS region transcription start site region 118783
Gm11273 13 21501029 to 21501418 389 - protein coding gene predicted gene 11273
Tssr121663 13 21501448 to 21501458 10 - TSS region transcription start site region 121663
Zfp389 13 21504316 to 21506524 2208 - pseudogene zinc finger protein 389
Cpgi5322 13 21506292 to 21506588 296 CpG island CpG island 5322
Zkscan8 13 21513221 to 21531114 17893 - protein coding gene zinc finger with KRAB and SCAN domains 8
Cpgi5323 13 21530709 to 21531253 544 CpG island CpG island 5323
Tssr121664 13 21531048 to 21531083 35 - TSS region transcription start site region 121664
Gm32724 13 21531069 to 21558701 27632 + lncRNA gene predicted gene, 32724
Tssr121665 13 21531084 to 21531103 19 - TSS region transcription start site region 121665
Olfr1366 13 21536974 to 21538027 1053 - protein coding gene olfactory receptor 1366
Olfr1535 13 21555040 to 21556020 980 - protein coding gene olfactory receptor 1535
Olfr1364 13 21573510 to 21574454 944 - protein coding gene olfactory receptor 1364
Olfr1362 13 21611020 to 21612004 984 - protein coding gene olfactory receptor 1362
Olfr11 13 21638580 to 21639521 941 - protein coding gene olfactory receptor 11
Olfr1361 13 21658368 to 21664523 6155 - protein coding gene olfactory receptor 1361
Olfr1360 13 21674001 to 21674980 979 - protein coding gene olfactory receptor 1360
Olfr1359 13 21703003 to 21703944 941 + protein coding gene olfactory receptor 1359
n-TGgcc7 13 21710580 to 21710650 70 + tRNA gene nuclear encoded tRNA glycine 7 (anticodon GCC)
n-TMcat7 13 21710994 to 21711065 71 + tRNA gene nuclear encoded tRNA methionine 7 (anticodon CAT)
Hist1h2bl 13 21715763 to 21716143 380 - protein coding gene histone cluster 1, H2bl
Cpgi5324 13 21716115 to 21716452 337 CpG island CpG island 5324
Tssr121666 13 21716175 to 21716189 14 - TSS region transcription start site region 121666
Tssr118784 13 21716385 to 21716401 16 + TSS region transcription start site region 118784
Hist1h2ai 13 21716422 to 21716814 392 + protein coding gene histone cluster 1, H2ai
Gm44367 13 21716667 to 21716804 137 - miRNA gene predicted gene, 44367
Cpgi5325 13 21717506 to 21717682 176 CpG island CpG island 5325
Tssr118785 13 21717626 to 21717631 5 + TSS region transcription start site region 118785
Hist1h3h 13 21717659 to 21718069 410 + protein coding gene histone cluster 1, H3h
Gm44357 13 21721433 to 21721574 141 + miRNA gene predicted gene, 44357
Hist1h2aj 13 21721457 to 21721808 351 - pseudogene histone cluster 1, H2aj
Cpgi5326 13 21721764 to 21722537 773 CpG island CpG island 5326
Tssr121667 13 21721795 to 21721811 16 - TSS region transcription start site region 121667
Tssr121668 13 21721815 to 21721867 52 - TSS region transcription start site region 121668
Hist1h2bm 13 21722044 to 21722526 482 + protein coding gene histone cluster 1, H2bm
Tssr118786 13 21722057 to 21722073 16 + TSS region transcription start site region 118786
Cpgi5327 13 21734955 to 21735595 640 CpG island CpG island 5327
Hist1h4j 13 21735034 to 21735456 422 + protein coding gene histone cluster 1, H4j
Tssr118787 13 21735055 to 21735070 15 + TSS region transcription start site region 118787
Tssr121669 13 21746316 to 21746348 32 - TSS region transcription start site region 121669
Cpgi5328 13 21750067 to 21750603 536 CpG island CpG island 5328
Hist1h4k 13 21750194 to 21750505 311 - protein coding gene histone cluster 1, H4k
Tssr121670 13 21750535 to 21750543 8 - TSS region transcription start site region 121670
Tssr118788 13 21750747 to 21750753 6 + TSS region transcription start site region 118788
Cpgi5329 13 21753328 to 21754154 826 CpG island CpG island 5329
Tssr118789 13 21753427 to 21753454 27 + TSS region transcription start site region 118789
Hist1h2ak 13 21753435 to 21753827 392 - protein coding gene histone cluster 1, H2ak
Gm44454 13 21753445 to 21753582 137 + miRNA gene predicted gene, 44454
Tssr121671 13 21753455 to 21753470 15 - TSS region transcription start site region 121671
Tssr121672 13 21753661 to 21753699 38 - TSS region transcription start site region 121672
Tssr121673 13 21753851 to 21753868 17 - TSS region transcription start site region 121673
Tssr118790 13 21754031 to 21754045 14 + TSS region transcription start site region 118790
Tssr118791 13 21754053 to 21754061 8 + TSS region transcription start site region 118791
Tssr118792 13 21754067 to 21754083 16 + TSS region transcription start site region 118792
Tssr118793 13 21754088 to 21754093 5 + TSS region transcription start site region 118793
Hist1h2bn 13 21754123 to 21754503 380 + protein coding gene histone cluster 1, H2bn
Gm11274 13 21769125 to 21770476 1351 + lincRNA gene predicted gene 11274
Cpgi5330 13 21779255 to 21779538 283 CpG island CpG island 5330
Hist1h1b 13 21779883 to 21780625 742 - protein coding gene histone cluster 1, H1b
Tssr121674 13 21780148 to 21780185 37 - TSS region transcription start site region 121674
Cpgi5331 13 21780238 to 21780750 512 CpG island CpG island 5331
Tssr4006 13 21780445 to 21780456 11 - TSS region transcription start site region 4006
Tssr121675 13 21780616 to 21780632 16 - TSS region transcription start site region 121675
Hist1h3i 13 21782960 to 21783370 410 - protein coding gene histone cluster 1, H3i
Tssr121676 13 21783391 to 21783406 15 - TSS region transcription start site region 121676
Hist1h2an 13 21786826 to 21787218 392 - protein coding gene histone cluster 1, H2an
Gm44346 13 21786875 to 21787015 140 + miRNA gene predicted gene, 44346
Cpgi5332 13 21787194 to 21787551 357 CpG island CpG island 5332
Tssr121677 13 21787241 to 21787256 15 - TSS region transcription start site region 121677
Hist1h2bp 13 21787461 to 21789213 1752 + protein coding gene histone cluster 1, H2bp
Tssr118794 13 21787480 to 21787494 14 + TSS region transcription start site region 118794
n-Tsta1 13 21795799 to 21795881 82 + tRNA gene nuclear encoded tRNA suppressor ta1 (anticodon TTA)
Hist1h2bq 13 21806612 to 21810197 3585 - protein coding gene histone cluster 1, H2bq
Tssr121678 13 21810190 to 21810200 10 - TSS region transcription start site region 121678
Tssr118795 13 21810428 to 21810442 14 + TSS region transcription start site region 118795
Hist1h2ao 13 21810465 to 21810944 479 + protein coding gene histone cluster 1, H2ao
Gm19658 13 21810712 to 21810849 137 - miRNA gene predicted gene, 19658
Tssr118796 13 21811737 to 21811754 17 + TSS region transcription start site region 118796
Hist1h4m 13 21811746 to 21812147 401 + protein coding gene histone cluster 1, H4m
Tssr118797 13 21811760 to 21811766 6 + TSS region transcription start site region 118797
Gm46403 13 21813170 to 21819385 6215 + protein coding gene predicted gene, 46403
Hist1h4n 13 21831793 to 21832158 365 - protein coding gene histone cluster 1, H4n
Tssr121679 13 21832194 to 21832198 4 - TSS region transcription start site region 121679
Hist1h2ap 13 21833024 to 21833475 451 - protein coding gene histone cluster 1, H2ap
Gm44466 13 21833093 to 21833230 137 + miRNA gene predicted gene, 44466
Tssr118798 13 21833736 to 21833751 15 + TSS region transcription start site region 118798
Hist1h2br 13 21833743 to 21837530 3787 + protein coding gene histone cluster 1 H2br
n-TLtaa2 13 21848022 to 21848104 82 - tRNA gene nuclear encoded tRNA leucine 2 (anticodon TAA)
n-TIaat11 13 21855320 to 21855393 73 - tRNA gene nuclear encoded tRNA isoleucine 11 (anticodon AAT)
n-TTagt4 13 21856021 to 21856094 73 + tRNA gene nuclear encoded tRNA threonine 4 (anticodon AGT)
Tssr118799 13 21865842 to 21865851 9 + TSS region transcription start site region 118799
Tssr118800 13 21866302 to 21866310 8 + TSS region transcription start site region 118800
Gm11278 13 21875233 to 21876229 996 - pseudogene predicted gene 11278
Tssr118801 13 21878201 to 21878204 3 + TSS region transcription start site region 118801
n-TIaat10 13 21882033 to 21882106 73 - tRNA gene nuclear encoded tRNA isoleucine 10 (anticodon AAT)
n-TFgaa1 13 21882885 to 21882957 72 - tRNA gene nuclear encoded tRNA pheylalanine 1 (anticodon GAA)
Cpgi5333 13 21896903 to 21897096 193 CpG island CpG island 5333
Mir1983 13 21896918 to 21897049 131 - miRNA gene microRNA 1983
n-TItat14 13 21896938 to 21897031 93 - tRNA gene nuclear encoded tRNA isoleucine 14 (anticodon TAT)
Tssr118802 13 21897186 to 21897198 12 + TSS region transcription start site region 118802
Tssr121680 13 21897528 to 21897535 7 - TSS region transcription start site region 121680
Tssr121681 13 21901113 to 21901116 3 - TSS region transcription start site region 121681
Gm11279 13 21903829 to 21904762 933 + pseudogene predicted gene 11279
n-TMcat2 13 21907111 to 21907182 71 + tRNA gene nuclear encoded tRNA methionine 2 (anticodon CAT)
n-TKttt23 13 21907940 to 21908012 72 + tRNA gene nuclear encoded tRNA lysine 23 (anticodon TTT)
Gm40831 13 21910872 to 21912358 1486 + lncRNA gene predicted gene, 40831
Tssr118803 13 21910921 to 21910931 10 + TSS region transcription start site region 118803
Tssr118804 13 21910939 to 21910949 10 + TSS region transcription start site region 118804
Tssr118805 13 21910966 to 21910975 9 + TSS region transcription start site region 118805
n-TDgtc11 13 21911313 to 21911384 71 + tRNA gene nuclear encoded tRNA aspartic acid 11 (anticodon GTC)
n-TLcaa2 13 21914838 to 21914943 105 + tRNA gene nuclear encoded tRNA leucine 2 (anticodon CAA)
n-TRtct3 13 21917162 to 21917247 85 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon TCT)
Cpgi5334 13 21918773 to 21919312 539 CpG island CpG island 5334
n-TSaga5 13 21919215 to 21919296 81 + tRNA gene nuclear encoded tRNA serine 5 (anticodon AGA)
n-TQctg10 13 21920200 to 21920271 71 + tRNA gene nuclear encoded tRNA glutamine 10 (anticodon CTG)
Gm44456 13 21924928 to 21925016 88 - miRNA gene predicted gene, 44456
n-TStga2 13 21924935 to 21925016 81 - tRNA gene nuclear encoded tRNA serine 2 (anticodon TGA)
D13Mit135 13 21926206 to 21926353 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 135
n-TSaga6 13 21927857 to 21927938 81 + tRNA gene nuclear encoded tRNA serine 6 (anticodon AGA)
n-TMcat10 13 21931169 to 21931240 71 - tRNA gene nuclear encoded tRNA methionine 10 (anticodon CAT)
n-TQctg8 13 21933961 to 21934032 71 - tRNA gene nuclear encoded tRNA glutamine 8 (anticodon CTG)
Tssr118806 13 21935421 to 21935424 3 + TSS region transcription start site region 118806
n-TDgtc13 13 21935497 to 21935568 71 - tRNA gene nuclear encoded tRNA aspartic acid 13 (anticodon GTC)
Tssr118807 13 21936187 to 21936191 4 + TSS region transcription start site region 118807
n-TSaga1 13 21937094 to 21937175 81 - tRNA gene nuclear encoded tRNA serine 1 (anticodon AGA)
n-TDgtc12 13 21940319 to 21940390 71 - tRNA gene nuclear encoded tRNA aspartic acid 12 (anticodon GTC)
Gm11280 13 21940374 to 21945197 4823 - bidirectional promoter lncRNA gene predicted gene 11280
n-TSaga8 13 21940914 to 21940995 81 - tRNA gene nuclear encoded tRNA serine 8 (anticodon AGA)
Cpgi5335 13 21944894 to 21945785 891 CpG island CpG island 5335
Zfp184 13 21944937 to 21960489 15552 + protein coding gene zinc finger protein 184 (Kruppel-like)
Tssr118808 13 21945084 to 21945140 56 + TSS region transcription start site region 118808
Gm11281 13 21953053 to 21953628 575 - pseudogene predicted gene 11281
Gm11282 13 21957023 to 21958123 1100 - pseudogene predicted gene 11282
n-TKttt22 13 21971788 to 21971860 72 + tRNA gene nuclear encoded tRNA lysine 22 (anticodon TTT)
n-TMcat8 13 21975032 to 21975103 71 + tRNA gene nuclear encoded tRNA methionine 8 (anticodon CAT)
Cpgi5336 13 21981063 to 21982087 1024 CpG island CpG island 5336
Tssr118809 13 21981190 to 21981204 14 + TSS region transcription start site region 118809
Pom121l2 13 21981194 to 21988734 7540 + protein coding gene POM121 membrane glycoprotein-like 2 (rat)
Tssr118810 13 21981218 to 21981223 5 + TSS region transcription start site region 118810
Tssr118811 13 21981452 to 21981504 52 + TSS region transcription start site region 118811
Tssr118812 13 21981517 to 21981522 5 + TSS region transcription start site region 118812
Tssr121682 13 21983574 to 21983581 7 - TSS region transcription start site region 121682
n-TSgct8 13 21994190 to 21994271 81 - tRNA gene nuclear encoded tRNA serine 8 (anticodon GCT)
n-TQctg1 13 21996581 to 21996652 71 - tRNA gene nuclear encoded tRNA glutamine 1 (anticodon CTG)
Prss16 13 22002176 to 22009741 7565 - protein coding gene protease, serine 16 (thymus)
Cpgi5337 13 22005824 to 22007356 1532 CpG island CpG island 5337
Tssr121683 13 22006405 to 22006417 12 - TSS region transcription start site region 121683
Tssr121684 13 22006425 to 22006447 22 - TSS region transcription start site region 121684
Tssr118813 13 22006532 to 22006550 18 + TSS region transcription start site region 118813