Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:21172180-21723727

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167 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
n-TQctg7 13 21172351 to 21172422 71 + tRNA gene nuclear encoded tRNA glutamine 7 (anticodon CTG)
n-TLcaa4 13 21172837 to 21172942 105 - tRNA gene nuclear encoded tRNA leucine 4 (anticodon CAA)
Gm47806 13 21177187 to 21187556 10369 - antisense lncRNA gene predicted gene, 47806
Tssr118746 13 21179424 to 21179427 3 + TSS region transcription start site region 118746
Tssr118747 13 21179433 to 21179440 7 + TSS region transcription start site region 118747
Tssr118748 13 21179450 to 21179462 12 + TSS region transcription start site region 118748
Trim27 13 21179450 to 21194723 15273 + protein coding gene tripartite motif-containing 27
Tssr118749 13 21179467 to 21179481 14 + TSS region transcription start site region 118749
Cpgi5312 13 21179606 to 21181311 1705 CpG island CpG island 5312
Tssr118750 13 21179899 to 21179942 43 + TSS region transcription start site region 118750
Tssr118751 13 21179950 to 21179966 16 + TSS region transcription start site region 118751
Tssr118752 13 21179983 to 21179992 9 + TSS region transcription start site region 118752
Tssr118753 13 21180162 to 21180176 14 + TSS region transcription start site region 118753
Tssr118754 13 21180179 to 21180245 66 + TSS region transcription start site region 118754
Tssr118755 13 21180390 to 21180460 70 + TSS region transcription start site region 118755
Tssr118756 13 21180549 to 21180604 55 + TSS region transcription start site region 118756
Tssr118757 13 21180950 to 21180953 3 + TSS region transcription start site region 118757
Tssr118758 13 21181159 to 21181168 9 + TSS region transcription start site region 118758
Tssr118759 13 21183763 to 21183784 21 + TSS region transcription start site region 118759
Tssr118760 13 21183862 to 21183874 12 + TSS region transcription start site region 118760
n-TLcaa1 13 21200204 to 21200308 104 + tRNA gene nuclear encoded tRNA leucine 1 (anticodon CAA)
Cpgi5313 13 21200375 to 21200825 450 CpG island CpG island 5313
Gm32420 13 21214480 to 21223827 9347 - lncRNA gene predicted gene, 32420
n-TRccg3 13 21215458 to 21215530 72 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon CCG)
n-TAagc16 13 21222586 to 21222657 71 + tRNA gene nuclear encoded tRNA alanine 16 (anticodon AGC)
Gm32525 13 21233557 to 21254198 20641 - lncRNA gene predicted gene, 32525
n-TAagc17 13 21234045 to 21234116 71 + tRNA gene nuclear encoded tRNA alanine 17 (anticodon AGC)
n-TAtgc11 13 21240945 to 21241016 71 + tRNA gene nuclear encoded tRNA alanine 11 (anticodon TGC)
n-TAagc18 13 21242570 to 21242641 71 + tRNA gene nuclear encoded tRNA alanine 18 (anticodon AGC)
Tssr118761 13 21242595 to 21242608 13 + TSS region transcription start site region 118761
n-TTagt3 13 21249194 to 21249267 73 - tRNA gene nuclear encoded tRNA threonine 3 (anticodon AGT)
n-TAcgc9 13 21254220 to 21254291 71 + tRNA gene nuclear encoded tRNA alanine 9 (anticodon CGC)
n-TAagc19 13 21259768 to 21259839 71 + tRNA gene nuclear encoded tRNA alanine 19 (anticodon AGC)
Cpgi5314 13 21259849 to 21260130 281 CpG island CpG island 5314
n-TTcgt2 13 21264580 to 21264653 73 + tRNA gene nuclear encoded tRNA threonine 2 (anticodon CGT)
n-TQttg3 13 21268469 to 21268540 71 - tRNA gene nuclear encoded tRNA glutamine 3 (anticodon TTG)
n-TTtgt4 13 21275956 to 21276029 73 + tRNA gene nuclear encoded tRNA threonine 4 (anticodon TGT)
Cpgi5315 13 21276213 to 21276448 235 CpG island CpG island 5315
n-TRtcg2 13 21279696 to 21279768 72 + tRNA gene nuclear encoded tRNA arginine 2 (anticodon TCG)
Tssr118762 13 21286427 to 21286434 7 + TSS region transcription start site region 118762
Gpx5 13 21286429 to 21292728 6299 - protein coding gene glutathione peroxidase 5
Tssr121620 13 21286467 to 21286472 5 - TSS region transcription start site region 121620
Tssr121621 13 21286480 to 21286486 6 - TSS region transcription start site region 121621
Tssr121622 13 21286502 to 21286512 10 - TSS region transcription start site region 121622
Tssr121623 13 21286809 to 21286810 1 - TSS region transcription start site region 121623
Tssr118763 13 21286897 to 21286912 15 + TSS region transcription start site region 118763
Tssr121624 13 21286905 to 21286913 8 - TSS region transcription start site region 121624
Tssr121625 13 21286937 to 21286945 8 - TSS region transcription start site region 121625
Tssr118764 13 21286939 to 21286942 3 + TSS region transcription start site region 118764
Tssr121626 13 21286971 to 21286972 1 - TSS region transcription start site region 121626
Tssr118765 13 21286982 to 21286993 11 + TSS region transcription start site region 118765
Tssr121627 13 21287002 to 21287032 30 - TSS region transcription start site region 121627
Tssr121628 13 21287048 to 21287051 3 - TSS region transcription start site region 121628
Tssr121629 13 21287058 to 21287063 5 - TSS region transcription start site region 121629
Tssr121630 13 21287099 to 21287119 20 - TSS region transcription start site region 121630
Tssr118766 13 21287153 to 21287164 11 + TSS region transcription start site region 118766
Tssr121631 13 21287196 to 21287203 7 - TSS region transcription start site region 121631
Tssr121632 13 21287229 to 21287235 6 - TSS region transcription start site region 121632
Tssr118767 13 21287238 to 21287267 29 + TSS region transcription start site region 118767
Tssr121633 13 21287249 to 21287251 2 - TSS region transcription start site region 121633
Tssr121634 13 21287256 to 21287275 19 - TSS region transcription start site region 121634
Tssr121635 13 21287290 to 21287293 3 - TSS region transcription start site region 121635
Tssr121636 13 21287336 to 21287349 13 - TSS region transcription start site region 121636
Tssr121637 13 21287353 to 21287366 13 - TSS region transcription start site region 121637
Tssr118768 13 21287375 to 21287382 7 + TSS region transcription start site region 118768
Tssr121638 13 21287392 to 21287395 3 - TSS region transcription start site region 121638
Tssr121639 13 21287402 to 21287405 3 - TSS region transcription start site region 121639
Tssr121640 13 21287408 to 21287409 1 - TSS region transcription start site region 121640
Tssr121641 13 21287437 to 21287446 9 - TSS region transcription start site region 121641
Tssr121642 13 21287453 to 21287469 16 - TSS region transcription start site region 121642
Tssr118769 13 21287503 to 21287535 32 + TSS region transcription start site region 118769
Tssr121643 13 21287525 to 21287533 8 - TSS region transcription start site region 121643
Tssr121644 13 21287561 to 21287568 7 - TSS region transcription start site region 121644
Tssr121645 13 21288741 to 21288751 10 - TSS region transcription start site region 121645
Tssr121646 13 21288769 to 21288789 20 - TSS region transcription start site region 121646
Tssr121647 13 21288801 to 21288809 8 - TSS region transcription start site region 121647
Tssr121648 13 21289272 to 21289286 14 - TSS region transcription start site region 121648
Tssr121649 13 21289908 to 21289920 12 - TSS region transcription start site region 121649
Tssr121650 13 21291343 to 21291356 13 - TSS region transcription start site region 121650
Tssr121651 13 21292679 to 21292711 32 - TSS region transcription start site region 121651
D13Mit17 13 21293266 to 21293433 167 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 17
Tssr121652 13 21293456 to 21293460 4 - TSS region transcription start site region 121652
Tssr118770 13 21293860 to 21293899 39 + TSS region transcription start site region 118770
Tssr118771 13 21295508 to 21295533 25 + TSS region transcription start site region 118771
Gm11270 13 21296248 to 21296718 470 - pseudogene predicted gene 11270
Gpx6 13 21312125 to 21319624 7499 + protein coding gene glutathione peroxidase 6
Tssr118772 13 21312178 to 21312187 9 + TSS region transcription start site region 118772
Tssr118773 13 21312198 to 21312220 22 + TSS region transcription start site region 118773
Tssr118774 13 21312223 to 21312236 13 + TSS region transcription start site region 118774
Tssr118775 13 21317208 to 21317247 39 + TSS region transcription start site region 118775
Tssr118776 13 21317254 to 21317261 7 + TSS region transcription start site region 118776
n-TTcgt4 13 21322813 to 21322886 73 + tRNA gene nuclear encoded tRNA threonine 4 (anticodon CGT)
n-TMcat13 13 21326717 to 21326789 72 - tRNA gene nuclear encoded tRNA methionine 13 (anticodon CAT)
Cpgi5316 13 21326901 to 21327182 281 CpG island CpG island 5316
Olfr1367 13 21346930 to 21347880 950 + protein coding gene olfactory receptor 1367
Tssr118777 13 21356896 to 21356905 9 + TSS region transcription start site region 118777
Cpgi5317 13 21362744 to 21363043 299 CpG island CpG island 5317
Zscan12 13 21362820 to 21372289 9469 + protein coding gene zinc finger and SCAN domain containing 12
Tssr118778 13 21362826 to 21362883 57 + TSS region transcription start site region 118778
Tssr118779 13 21362897 to 21362922 25 + TSS region transcription start site region 118779
Tssr118780 13 21362929 to 21362937 8 + TSS region transcription start site region 118780
Gm11271 13 21380691 to 21381130 439 - pseudogene predicted gene 11271
Zkscan3 13 21387004 to 21402755 15751 - protein coding gene zinc finger with KRAB and SCAN domains 3
Mir6942 13 21396578 to 21396638 60 - miRNA gene microRNA 6942
Tssr121653 13 21401857 to 21401863 6 - TSS region transcription start site region 121653
Cpgi5318 13 21402445 to 21402815 370 CpG island CpG island 5318
Tssr121654 13 21402688 to 21402748 60 - TSS region transcription start site region 121654
Tssr118781 13 21416020 to 21416024 4 + TSS region transcription start site region 118781
Pgbd1 13 21421275 to 21441053 19778 - protein coding gene piggyBac transposable element derived 1
Cpgi5319 13 21440669 to 21441282 613 CpG island CpG island 5319
Tssr121655 13 21440691 to 21440713 22 - TSS region transcription start site region 121655
Tssr121656 13 21441044 to 21441069 25 - TSS region transcription start site region 121656
4930470G03Rik 13 21441329 to 21442803 1474 + bidirectional promoter lncRNA gene RIKEN cDNA 4930470G03 gene
Zscan26 13 21442180 to 21453730 11550 - protein coding gene zinc finger and SCAN domain containing 26
Mir1896 13 21445160 to 21445240 80 + miRNA gene microRNA 1896
Tssr121657 13 21447238 to 21447246 8 - TSS region transcription start site region 121657
Cpgi5320 13 21453429 to 21453871 442 CpG island CpG island 5320
Tssr121658 13 21453669 to 21453700 31 - TSS region transcription start site region 121658
Tssr121659 13 21453714 to 21453761 47 - TSS region transcription start site region 121659
Nkapl 13 21467047 to 21468501 1454 - protein coding gene NFKB activating protein-like
Cpgi5321 13 21468036 to 21468772 736 CpG island CpG island 5321
Tssr121660 13 21468463 to 21468473 10 - TSS region transcription start site region 121660
Tssr121661 13 21468474 to 21468508 34 - TSS region transcription start site region 121661
Tssr121662 13 21468510 to 21468551 41 - TSS region transcription start site region 121662
Gm40828 13 21477617 to 21478791 1174 - lncRNA gene predicted gene, 40828
Zkscan4 13 21478907 to 21485507 6600 + protein coding gene zinc finger with KRAB and SCAN domains 4
Gm10065 13 21479097 to 21479441 344 - protein coding gene predicted gene 10065
Gm23779 13 21486338 to 21486401 63 - snRNA gene predicted gene, 23779
n-TSgct2 13 21492845 to 21492926 81 - tRNA gene nuclear encoded tRNA serine 2 (anticodon GCT)
Tssr118782 13 21495218 to 21495260 42 + TSS region transcription start site region 118782
AK157302 13 21495223 to 21497137 1914 + protein coding gene cDNA sequence AK157302
Tssr118783 13 21495357 to 21495381 24 + TSS region transcription start site region 118783
Gm11273 13 21501029 to 21501418 389 - protein coding gene predicted gene 11273
Tssr121663 13 21501448 to 21501458 10 - TSS region transcription start site region 121663
Zfp389 13 21504316 to 21506524 2208 - pseudogene zinc finger protein 389
Cpgi5322 13 21506292 to 21506588 296 CpG island CpG island 5322
Zkscan8 13 21513221 to 21531114 17893 - protein coding gene zinc finger with KRAB and SCAN domains 8
Cpgi5323 13 21530709 to 21531253 544 CpG island CpG island 5323
Tssr121664 13 21531048 to 21531083 35 - TSS region transcription start site region 121664
Gm32724 13 21531069 to 21558701 27632 + lncRNA gene predicted gene, 32724
Tssr121665 13 21531084 to 21531103 19 - TSS region transcription start site region 121665
Olfr1366 13 21536974 to 21538027 1053 - protein coding gene olfactory receptor 1366
Olfr1535 13 21555040 to 21556020 980 - protein coding gene olfactory receptor 1535
Olfr1364 13 21573510 to 21574454 944 - protein coding gene olfactory receptor 1364
Olfr1362 13 21611020 to 21612004 984 - protein coding gene olfactory receptor 1362
Olfr11 13 21638580 to 21639521 941 - protein coding gene olfactory receptor 11
Olfr1361 13 21658368 to 21664523 6155 - protein coding gene olfactory receptor 1361
Olfr1360 13 21674001 to 21674980 979 - protein coding gene olfactory receptor 1360
Olfr1359 13 21703003 to 21703944 941 + protein coding gene olfactory receptor 1359
n-TGgcc7 13 21710580 to 21710650 70 + tRNA gene nuclear encoded tRNA glycine 7 (anticodon GCC)
n-TMcat7 13 21710994 to 21711065 71 + tRNA gene nuclear encoded tRNA methionine 7 (anticodon CAT)
Hist1h2bl 13 21715763 to 21716143 380 - protein coding gene histone cluster 1, H2bl
Cpgi5324 13 21716115 to 21716452 337 CpG island CpG island 5324
Tssr121666 13 21716175 to 21716189 14 - TSS region transcription start site region 121666
Tssr118784 13 21716385 to 21716401 16 + TSS region transcription start site region 118784
Hist1h2ai 13 21716422 to 21716814 392 + protein coding gene histone cluster 1, H2ai
Gm44367 13 21716667 to 21716804 137 - miRNA gene predicted gene, 44367
Cpgi5325 13 21717506 to 21717682 176 CpG island CpG island 5325
Tssr118785 13 21717626 to 21717631 5 + TSS region transcription start site region 118785
Hist1h3h 13 21717659 to 21718069 410 + protein coding gene histone cluster 1, H3h
Gm44357 13 21721433 to 21721574 141 + miRNA gene predicted gene, 44357
Hist1h2aj 13 21721457 to 21721808 351 - pseudogene histone cluster 1, H2aj
Cpgi5326 13 21721764 to 21722537 773 CpG island CpG island 5326
Tssr121667 13 21721795 to 21721811 16 - TSS region transcription start site region 121667
Tssr121668 13 21721815 to 21721867 52 - TSS region transcription start site region 121668
Hist1h2bm 13 21722044 to 21722526 482 + protein coding gene histone cluster 1, H2bm
Tssr118786 13 21722057 to 21722073 16 + TSS region transcription start site region 118786