Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:21164480-21273827

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr118745 13 21166178 to 21166183 5 + TSS region transcription start site region 118745
Gm32298 13 21166337 to 21170774 4437 + lncRNA gene predicted gene, 32298
n-TMcat14 13 21167604 to 21167676 72 + tRNA gene nuclear encoded tRNA methionine 14 (anticodon CAT)
n-TKctt28 13 21168075 to 21168147 72 - tRNA gene nuclear encoded tRNA lysine 28 (anticodon TTT)
n-TMcat15 13 21169687 to 21169759 72 - tRNA gene nuclear encoded tRNA methionine 15 (anticodon CAT)
Cpgi5310 13 21169773 to 21170051 278 CpG island CpG island 5310
n-TLaag7 13 21170036 to 21170117 81 + tRNA gene nuclear encoded tRNA leucine 7 (anticodon AAG)
n-TLaag5 13 21170206 to 21170287 81 + tRNA gene nuclear encoded tRNA leucine 5 (anticodon AAG)
Cpgi5311 13 21171176 to 21171426 250 CpG island CpG island 5311
n-TQctg7 13 21172351 to 21172422 71 + tRNA gene nuclear encoded tRNA glutamine 7 (anticodon CTG)
n-TLcaa4 13 21172837 to 21172942 105 - tRNA gene nuclear encoded tRNA leucine 4 (anticodon CAA)
Gm47806 13 21177187 to 21187556 10369 - antisense lncRNA gene predicted gene, 47806
Tssr118746 13 21179424 to 21179427 3 + TSS region transcription start site region 118746
Tssr118747 13 21179433 to 21179440 7 + TSS region transcription start site region 118747
Tssr118748 13 21179450 to 21179462 12 + TSS region transcription start site region 118748
Trim27 13 21179450 to 21194723 15273 + protein coding gene tripartite motif-containing 27
Tssr118749 13 21179467 to 21179481 14 + TSS region transcription start site region 118749
Cpgi5312 13 21179606 to 21181311 1705 CpG island CpG island 5312
Tssr118750 13 21179899 to 21179942 43 + TSS region transcription start site region 118750
Tssr118751 13 21179950 to 21179966 16 + TSS region transcription start site region 118751
Tssr118752 13 21179983 to 21179992 9 + TSS region transcription start site region 118752
Tssr118753 13 21180162 to 21180176 14 + TSS region transcription start site region 118753
Tssr118754 13 21180179 to 21180245 66 + TSS region transcription start site region 118754
Tssr118755 13 21180390 to 21180460 70 + TSS region transcription start site region 118755
Tssr118756 13 21180549 to 21180604 55 + TSS region transcription start site region 118756
Tssr118757 13 21180950 to 21180953 3 + TSS region transcription start site region 118757
Tssr118758 13 21181159 to 21181168 9 + TSS region transcription start site region 118758
Tssr118759 13 21183763 to 21183784 21 + TSS region transcription start site region 118759
Tssr118760 13 21183862 to 21183874 12 + TSS region transcription start site region 118760
n-TLcaa1 13 21200204 to 21200308 104 + tRNA gene nuclear encoded tRNA leucine 1 (anticodon CAA)
Cpgi5313 13 21200375 to 21200825 450 CpG island CpG island 5313
Gm32420 13 21214480 to 21223827 9347 - lncRNA gene predicted gene, 32420
n-TRccg3 13 21215458 to 21215530 72 - tRNA gene nuclear encoded tRNA arginine 3 (anticodon CCG)
n-TAagc16 13 21222586 to 21222657 71 + tRNA gene nuclear encoded tRNA alanine 16 (anticodon AGC)
Gm32525 13 21233557 to 21254198 20641 - lncRNA gene predicted gene, 32525
n-TAagc17 13 21234045 to 21234116 71 + tRNA gene nuclear encoded tRNA alanine 17 (anticodon AGC)
n-TAtgc11 13 21240945 to 21241016 71 + tRNA gene nuclear encoded tRNA alanine 11 (anticodon TGC)
n-TAagc18 13 21242570 to 21242641 71 + tRNA gene nuclear encoded tRNA alanine 18 (anticodon AGC)
Tssr118761 13 21242595 to 21242608 13 + TSS region transcription start site region 118761
n-TTagt3 13 21249194 to 21249267 73 - tRNA gene nuclear encoded tRNA threonine 3 (anticodon AGT)
n-TAcgc9 13 21254220 to 21254291 71 + tRNA gene nuclear encoded tRNA alanine 9 (anticodon CGC)
n-TAagc19 13 21259768 to 21259839 71 + tRNA gene nuclear encoded tRNA alanine 19 (anticodon AGC)
Cpgi5314 13 21259849 to 21260130 281 CpG island CpG island 5314
n-TTcgt2 13 21264580 to 21264653 73 + tRNA gene nuclear encoded tRNA threonine 2 (anticodon CGT)
n-TQttg3 13 21268469 to 21268540 71 - tRNA gene nuclear encoded tRNA glutamine 3 (anticodon TTG)