Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:19343175-19912825

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcrg 13 19178042 to 19356476 178434 + complex/cluster/region T cell receptor gamma chain
Tssr121589 13 19343258 to 19343266 8 - TSS region transcription start site region 121589
Tssr118550 13 19343442 to 19343459 17 + TSS region transcription start site region 118550
Tssr118551 13 19344200 to 19344233 33 + TSS region transcription start site region 118551
Tssr121590 13 19344324 to 19344348 24 - TSS region transcription start site region 121590
Tcrg-C4 13 19344558 to 19352343 7785 + gene segment T cell receptor gamma, constant 4
Tssr121591 13 19345189 to 19345231 42 - TSS region transcription start site region 121591
Tssr121592 13 19345769 to 19345799 30 - TSS region transcription start site region 121592
Tssr118552 13 19345956 to 19345967 11 + TSS region transcription start site region 118552
Tssr118553 13 19347086 to 19347090 4 + TSS region transcription start site region 118553
Tssr118554 13 19347538 to 19347554 16 + TSS region transcription start site region 118554
Tssr118555 13 19349035 to 19349050 15 + TSS region transcription start site region 118555
Tssr118556 13 19350300 to 19350328 28 + TSS region transcription start site region 118556
Tssr118557 13 19352348 to 19352366 18 + TSS region transcription start site region 118557
Tssr118558 13 19352406 to 19352422 16 + TSS region transcription start site region 118558
Tssr121593 13 19356176 to 19356182 6 - TSS region transcription start site region 121593
Tssr121594 13 19356280 to 19356305 25 - TSS region transcription start site region 121594
Tssr118559 13 19356528 to 19356551 23 + TSS region transcription start site region 118559
Tssr121595 13 19357300 to 19357311 11 - TSS region transcription start site region 121595
Tssr121596 13 19357343 to 19357399 56 - TSS region transcription start site region 121596
Tssr118560 13 19357521 to 19357540 19 + TSS region transcription start site region 118560
Stard3nl 13 19357676 to 19395795 38119 - protein coding gene STARD3 N-terminal like
Tssr121597 13 19357939 to 19357955 16 - TSS region transcription start site region 121597
Tssr118561 13 19358042 to 19358053 11 + TSS region transcription start site region 118561
Tssr118562 13 19358055 to 19358071 16 + TSS region transcription start site region 118562
Tssr121598 13 19358137 to 19358148 11 - TSS region transcription start site region 121598
Tssr121599 13 19358279 to 19358298 19 - TSS region transcription start site region 121599
Tssr121600 13 19358318 to 19358367 49 - TSS region transcription start site region 121600
Tssr118563 13 19358496 to 19358504 8 + TSS region transcription start site region 118563
Tssr121601 13 19358567 to 19358572 5 - TSS region transcription start site region 121601
Tssr121602 13 19358612 to 19358624 12 - TSS region transcription start site region 121602
D13Mit153 13 19381938 to 19382137 199 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 153
Tssr118564 13 19382611 to 19382617 6 + TSS region transcription start site region 118564
Gm42683 13 19393126 to 19395453 2327 - unclassified gene predicted gene 42683
Cpgi5304 13 19395316 to 19395972 656 CpG island CpG island 5304
Tssr121603 13 19395728 to 19395789 61 - TSS region transcription start site region 121603
Tssr121604 13 19395794 to 19395795 1 - TSS region transcription start site region 121604
Tssr118565 13 19395997 to 19396010 13 + TSS region transcription start site region 118565
Gm40827 13 19403876 to 19425573 21697 + lncRNA gene predicted gene, 40827
Gm18131 13 19412800 to 19413248 448 + pseudogene predicted gene, 18131
D13Mit219 13 19425510 to 19425778 268 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 219
9330199G10Rik 13 19462847 to 19504367 41520 - lincRNA gene RIKEN cDNA 9330199G10 gene
Gm18363 13 19525987 to 19526716 729 + pseudogene predicted gene, 18363
Epdr1 13 19591706 to 19619927 28221 - protein coding gene ependymin related protein 1 (zebrafish)
Cpgi5305 13 19619194 to 19619854 660 CpG island CpG island 5305
Tssr121605 13 19619758 to 19619811 53 - TSS region transcription start site region 121605
Tssr121606 13 19619820 to 19619827 7 - TSS region transcription start site region 121606
Cpgi5306 13 19622968 to 19623850 882 CpG island CpG island 5306
Tssr118566 13 19623163 to 19623183 20 + TSS region transcription start site region 118566
Sfrp4 13 19623175 to 19632825 9650 + protein coding gene secreted frizzled-related protein 4
Tssr118567 13 19623300 to 19623313 13 + TSS region transcription start site region 118567
Tssr118568 13 19623333 to 19623340 7 + TSS region transcription start site region 118568
D13Mit218 13 19629518 to 19629692 174 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 218
Nme8 13 19645078 to 19697794 52716 - protein coding gene NME/NM23 family member 8
Gm47606 13 19672382 to 19673934 1552 - unclassified gene predicted gene, 47606
Tssr121607 13 19697733 to 19697771 38 - TSS region transcription start site region 121607
Gpr141b 13 19727426 to 19732951 5525 - protein coding gene G protein-coupled receptor 141B
Tssr121608 13 19732730 to 19732755 25 - TSS region transcription start site region 121608
Tssr121609 13 19732800 to 19732815 15 - TSS region transcription start site region 121609
Tssr121610 13 19732929 to 19732954 25 - TSS region transcription start site region 121610
Gpr141 13 19749682 to 19824257 74575 - protein coding gene G protein-coupled receptor 141
Tssr121611 13 19774202 to 19774206 4 - TSS region transcription start site region 121611
Gm19154 13 19820778 to 19821654 876 + pseudogene predicted gene, 19154
Tssr121612 13 19824234 to 19824268 34 - TSS region transcription start site region 121612