Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:19279940-21089989

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334 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcrg 13 19178042 to 19356476 178434 + complex/cluster/region T cell receptor gamma chain
Tssr121559 13 19304378 to 19304389 11 - TSS region transcription start site region 121559
Tssr121560 13 19304437 to 19304451 14 - TSS region transcription start site region 121560
Tssr121561 13 19304988 to 19304993 5 - TSS region transcription start site region 121561
Tcrg-C2 13 19305060 to 19307551 2491 - gene segment T-cell receptor gamma, constant 2
Tssr118532 13 19305123 to 19305173 50 + TSS region transcription start site region 118532
Tssr121562 13 19306161 to 19306183 22 - TSS region transcription start site region 121562
Tssr121563 13 19306302 to 19306316 14 - TSS region transcription start site region 121563
Tssr121564 13 19307368 to 19307376 8 - TSS region transcription start site region 121564
Tssr121565 13 19307860 to 19307891 31 - TSS region transcription start site region 121565
Tssr121566 13 19308034 to 19308039 5 - TSS region transcription start site region 121566
Tssr121567 13 19308521 to 19308534 13 - TSS region transcription start site region 121567
Tssr121568 13 19308552 to 19308563 11 - TSS region transcription start site region 121568
Trgj2 13 19311245 to 19311304 59 - gene segment T cell receptor gamma joining 2
Tssr121569 13 19311285 to 19311292 7 - TSS region transcription start site region 121569
Tssr121570 13 19311308 to 19311326 18 - TSS region transcription start site region 121570
Tssr121571 13 19311363 to 19311372 9 - TSS region transcription start site region 121571
Tssr121572 13 19311424 to 19311435 11 - TSS region transcription start site region 121572
Tssr121573 13 19311447 to 19311456 9 - TSS region transcription start site region 121573
Tssr121574 13 19311466 to 19311475 9 - TSS region transcription start site region 121574
Tssr121575 13 19311481 to 19311498 17 - TSS region transcription start site region 121575
Tssr121576 13 19311551 to 19311566 15 - TSS region transcription start site region 121576
Tssr121577 13 19311682 to 19311715 33 - TSS region transcription start site region 121577
Tssr118533 13 19336560 to 19336570 10 + TSS region transcription start site region 118533
Trgv2 13 19336573 to 19337026 453 - gene segment T cell receptor gamma variable 2
Tssr121578 13 19336825 to 19336831 6 - TSS region transcription start site region 121578
Tssr121579 13 19337035 to 19337044 9 - TSS region transcription start site region 121579
Tssr121580 13 19337047 to 19337075 28 - TSS region transcription start site region 121580
Tssr121581 13 19337126 to 19337133 7 - TSS region transcription start site region 121581
Tssr121582 13 19337179 to 19337190 11 - TSS region transcription start site region 121582
Tssr4004 13 19337250 to 19337271 21 + TSS region transcription start site region 4004
Tssr121583 13 19337286 to 19337296 10 - TSS region transcription start site region 121583
Tssr121584 13 19337327 to 19337336 9 - TSS region transcription start site region 121584
Tssr121585 13 19338744 to 19338755 11 - TSS region transcription start site region 121585
Tssr121586 13 19338763 to 19338775 12 - TSS region transcription start site region 121586
Tssr121587 13 19338781 to 19338795 14 - TSS region transcription start site region 121587
Tssr118534 13 19339816 to 19339829 13 + TSS region transcription start site region 118534
Tssr118535 13 19339846 to 19339863 17 + TSS region transcription start site region 118535
Tssr118536 13 19339867 to 19339876 9 + TSS region transcription start site region 118536
Tssr118537 13 19339970 to 19339981 11 + TSS region transcription start site region 118537
Tcrg-V1 13 19340016 to 19340454 438 + gene segment T cell receptor gamma, variable 1
Tssr118538 13 19340547 to 19340578 31 + TSS region transcription start site region 118538
Tssr118539 13 19341692 to 19341698 6 + TSS region transcription start site region 118539
Tssr121588 13 19341702 to 19341709 7 - TSS region transcription start site region 121588
Tssr118540 13 19341765 to 19341771 6 + TSS region transcription start site region 118540
Tssr118541 13 19341816 to 19341827 11 + TSS region transcription start site region 118541
Tssr118542 13 19341880 to 19341905 25 + TSS region transcription start site region 118542
Tssr118543 13 19341928 to 19341941 13 + TSS region transcription start site region 118543
Tssr118544 13 19341943 to 19341961 18 + TSS region transcription start site region 118544
Tssr118545 13 19341965 to 19341987 22 + TSS region transcription start site region 118545
Tssr118546 13 19342058 to 19342069 11 + TSS region transcription start site region 118546
Tssr118547 13 19342081 to 19342142 61 + TSS region transcription start site region 118547
Trgj4 13 19342152 to 19342212 60 + gene segment T cell receptor gamma joining 4
Tssr118548 13 19342154 to 19342161 7 + TSS region transcription start site region 118548
Tssr118549 13 19342727 to 19342739 12 + TSS region transcription start site region 118549
Tssr121589 13 19343258 to 19343266 8 - TSS region transcription start site region 121589
Tssr118550 13 19343442 to 19343459 17 + TSS region transcription start site region 118550
Tssr118551 13 19344200 to 19344233 33 + TSS region transcription start site region 118551
Tssr121590 13 19344324 to 19344348 24 - TSS region transcription start site region 121590
Tcrg-C4 13 19344558 to 19352343 7785 + gene segment T cell receptor gamma, constant 4
Tssr121591 13 19345189 to 19345231 42 - TSS region transcription start site region 121591
Tssr121592 13 19345769 to 19345799 30 - TSS region transcription start site region 121592
Tssr118552 13 19345956 to 19345967 11 + TSS region transcription start site region 118552
Tssr118553 13 19347086 to 19347090 4 + TSS region transcription start site region 118553
Tssr118554 13 19347538 to 19347554 16 + TSS region transcription start site region 118554
Tssr118555 13 19349035 to 19349050 15 + TSS region transcription start site region 118555
Tssr118556 13 19350300 to 19350328 28 + TSS region transcription start site region 118556
Tssr118557 13 19352348 to 19352366 18 + TSS region transcription start site region 118557
Tssr118558 13 19352406 to 19352422 16 + TSS region transcription start site region 118558
Tssr121593 13 19356176 to 19356182 6 - TSS region transcription start site region 121593
Tssr121594 13 19356280 to 19356305 25 - TSS region transcription start site region 121594
Tssr118559 13 19356528 to 19356551 23 + TSS region transcription start site region 118559
Tssr121595 13 19357300 to 19357311 11 - TSS region transcription start site region 121595
Tssr121596 13 19357343 to 19357399 56 - TSS region transcription start site region 121596
Tssr118560 13 19357521 to 19357540 19 + TSS region transcription start site region 118560
Stard3nl 13 19357676 to 19395795 38119 - protein coding gene STARD3 N-terminal like
Tssr121597 13 19357939 to 19357955 16 - TSS region transcription start site region 121597
Tssr118561 13 19358042 to 19358053 11 + TSS region transcription start site region 118561
Tssr118562 13 19358055 to 19358071 16 + TSS region transcription start site region 118562
Tssr121598 13 19358137 to 19358148 11 - TSS region transcription start site region 121598
Tssr121599 13 19358279 to 19358298 19 - TSS region transcription start site region 121599
Tssr121600 13 19358318 to 19358367 49 - TSS region transcription start site region 121600
Tssr118563 13 19358496 to 19358504 8 + TSS region transcription start site region 118563
Tssr121601 13 19358567 to 19358572 5 - TSS region transcription start site region 121601
Tssr121602 13 19358612 to 19358624 12 - TSS region transcription start site region 121602
D13Mit153 13 19381938 to 19382137 199 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 153
Tssr118564 13 19382611 to 19382617 6 + TSS region transcription start site region 118564
Gm42683 13 19393126 to 19395453 2327 - unclassified gene predicted gene 42683
Cpgi5304 13 19395316 to 19395972 656 CpG island CpG island 5304
Tssr121603 13 19395728 to 19395789 61 - TSS region transcription start site region 121603
Tssr121604 13 19395794 to 19395795 1 - TSS region transcription start site region 121604
Tssr118565 13 19395997 to 19396010 13 + TSS region transcription start site region 118565
Gm40827 13 19403876 to 19425573 21697 + lncRNA gene predicted gene, 40827
Gm18131 13 19412800 to 19413248 448 + pseudogene predicted gene, 18131
D13Mit219 13 19425510 to 19425778 268 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 219
9330199G10Rik 13 19462847 to 19504367 41520 - lincRNA gene RIKEN cDNA 9330199G10 gene
Gm18363 13 19525987 to 19526716 729 + pseudogene predicted gene, 18363
Epdr1 13 19591706 to 19619927 28221 - protein coding gene ependymin related protein 1 (zebrafish)
Cpgi5305 13 19619194 to 19619854 660 CpG island CpG island 5305
Tssr121605 13 19619758 to 19619811 53 - TSS region transcription start site region 121605
Tssr121606 13 19619820 to 19619827 7 - TSS region transcription start site region 121606
Cpgi5306 13 19622968 to 19623850 882 CpG island CpG island 5306
Tssr118566 13 19623163 to 19623183 20 + TSS region transcription start site region 118566
Sfrp4 13 19623175 to 19632825 9650 + protein coding gene secreted frizzled-related protein 4
Tssr118567 13 19623300 to 19623313 13 + TSS region transcription start site region 118567
Tssr118568 13 19623333 to 19623340 7 + TSS region transcription start site region 118568
D13Mit218 13 19629518 to 19629692 174 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 218
Nme8 13 19645078 to 19697794 52716 - protein coding gene NME/NM23 family member 8
Gm47606 13 19672382 to 19673934 1552 - unclassified gene predicted gene, 47606
Tssr121607 13 19697733 to 19697771 38 - TSS region transcription start site region 121607
Gpr141b 13 19727426 to 19732951 5525 - protein coding gene G protein-coupled receptor 141B
Tssr121608 13 19732730 to 19732755 25 - TSS region transcription start site region 121608
Tssr121609 13 19732800 to 19732815 15 - TSS region transcription start site region 121609
Tssr121610 13 19732929 to 19732954 25 - TSS region transcription start site region 121610
Gpr141 13 19749682 to 19824257 74575 - protein coding gene G protein-coupled receptor 141
Tssr121611 13 19774202 to 19774206 4 - TSS region transcription start site region 121611
Gm19154 13 19820778 to 19821654 876 + pseudogene predicted gene, 19154
Tssr121612 13 19824234 to 19824268 34 - TSS region transcription start site region 121612
Tssr121613 13 19927914 to 19927921 7 - TSS region transcription start site region 121613
Gm5446 13 19995021 to 19995804 783 - pseudogene predicted gene 5446
Cpgi5307 13 19995733 to 19995922 189 CpG island CpG island 5307
Tssr121614 13 20016502 to 20016506 4 - TSS region transcription start site region 121614
Cpgi5308 13 20090160 to 20091835 1675 CpG island CpG island 5308
Tssr118569 13 20090257 to 20090285 28 + TSS region transcription start site region 118569
Tssr118570 13 20090296 to 20090310 14 + TSS region transcription start site region 118570
Tssr118571 13 20090452 to 20090493 41 + TSS region transcription start site region 118571
Tssr118572 13 20090500 to 20090518 18 + TSS region transcription start site region 118572
Tssr118573 13 20090538 to 20090633 95 + TSS region transcription start site region 118573
Elmo1 13 20090596 to 20608353 517757 + protein coding gene engulfment and cell motility 1
Tssr118574 13 20090635 to 20090642 7 + TSS region transcription start site region 118574
Tssr118575 13 20090644 to 20090655 11 + TSS region transcription start site region 118575
Tssr118576 13 20090664 to 20090679 15 + TSS region transcription start site region 118576
Tssr121615 13 20091197 to 20091208 11 - TSS region transcription start site region 121615
Tssr121616 13 20091520 to 20091527 7 - TSS region transcription start site region 121616
Tssr118577 13 20096011 to 20096037 26 + TSS region transcription start site region 118577
Tssr118578 13 20098186 to 20098189 3 + TSS region transcription start site region 118578
Tssr118579 13 20111504 to 20111515 11 + TSS region transcription start site region 118579
Tssr118580 13 20184940 to 20184989 49 + TSS region transcription start site region 118580
Tssr118581 13 20184998 to 20185011 13 + TSS region transcription start site region 118581
Cpgi5309 13 20185250 to 20185516 266 CpG island CpG island 5309
Tssr118582 13 20185287 to 20185301 14 + TSS region transcription start site region 118582
Tssr118583 13 20185322 to 20185364 42 + TSS region transcription start site region 118583
Tssr118584 13 20185403 to 20185410 7 + TSS region transcription start site region 118584
Tssr118585 13 20185416 to 20185427 11 + TSS region transcription start site region 118585
Tssr118586 13 20204424 to 20204434 10 + TSS region transcription start site region 118586
Tssr121617 13 20228436 to 20228440 4 - TSS region transcription start site region 121617
Tssr118587 13 20240806 to 20240814 8 + TSS region transcription start site region 118587
D13Dcr5 13 20255418 to 20255513 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 5
Gm47665 13 20271905 to 20274039 2134 + unclassified gene predicted gene, 47665
Bmd3 13 20293442 to 20293650 208 QTL bone mineral density 3
D13Mit16 13 20293442 to 20293650 208 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 16
Sysbp2 13 20293442 to 59673791 39380349 QTL systolic blood pressure 2
Heal24 13 20293442 to 20293650 208 QTL wound healing/regeneration
Heal23 13 20293442 to 20293650 208 QTL wound healing/regeneration 23
Tssr118588 13 20352937 to 20352942 5 + TSS region transcription start site region 118588
Tssr118589 13 20406342 to 20406358 16 + TSS region transcription start site region 118589
D13Ertd212e 13 20417520 to 20417734 214 DNA segment DNA segment, Chr 13, ERATO Doi 212, expressed
Tssr118590 13 20429059 to 20429071 12 + TSS region transcription start site region 118590
Tssr118591 13 20429099 to 20429109 10 + TSS region transcription start site region 118591
D13Dcr1 13 20431332 to 20431458 126 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 1
D13Mit3 13 20431342 to 20431502 160 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 3
Pregq3 13 20431342 to 72237070 51805728 QTL pregnancy QTL 3
Tesq1 13 20431342 to 55572704 35141362 QTL testis weight QTL 1
Twq1 13 20431342 to 20431502 160 QTL testis weight QTL 1
Tssr118592 13 20445284 to 20445289 5 + TSS region transcription start site region 118592
Gm32036 13 20445286 to 20473490 28204 - antisense lncRNA gene predicted gene, 32036
Tssr118593 13 20470115 to 20470120 5 + TSS region transcription start site region 118593
Tssr118594 13 20472690 to 20472736 46 + TSS region transcription start site region 118594
Tssr118595 13 20473064 to 20473089 25 + TSS region transcription start site region 118595
Tssr118596 13 20473094 to 20473109 15 + TSS region transcription start site region 118596
Tssr118597 13 20477499 to 20477510 11 + TSS region transcription start site region 118597
Tssr118598 13 20477602 to 20477662 60 + TSS region transcription start site region 118598
Heal3 13 20496030 to 20496173 143 QTL wound healing/regeneration 3
D13Mit115 13 20496030 to 20496173 143 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 115
Gm47664 13 20499888 to 20501227 1339 + sense intronic lncRNA gene predicted gene, 47664
Gm47657 13 20504795 to 20506598 1803 + unclassified gene predicted gene, 47657
Tssr118599 13 20605394 to 20605414 20 + TSS region transcription start site region 118599
Tssr118600 13 20605437 to 20605461 24 + TSS region transcription start site region 118600
Gm47721 13 20645757 to 20647164 1407 + pseudogene predicted gene, 47721
Tssr4005 13 20660578 to 20660582 4 - TSS region transcription start site region 4005
Gm7611 13 20704383 to 20705382 999 - pseudogene predicted gene 7611
Tssr118601 13 20748347 to 20748348 1 + TSS region transcription start site region 118601
Gm7614 13 20748498 to 20748825 327 + pseudogene predicted gene 7614
Aoah 13 20794113 to 21036617 242504 + protein coding gene acyloxyacyl hydrolase
Tssr118602 13 20794128 to 20794179 51 + TSS region transcription start site region 118602
Tssr118603 13 20794187 to 20794204 17 + TSS region transcription start site region 118603
Tssr118604 13 20794212 to 20794223 11 + TSS region transcription start site region 118604
Tssr118605 13 20794298 to 20794307 9 + TSS region transcription start site region 118605
Tssr118606 13 20794312 to 20794364 52 + TSS region transcription start site region 118606
Tssr118607 13 20794445 to 20794452 7 + TSS region transcription start site region 118607
Tssr118608 13 20794920 to 20794942 22 + TSS region transcription start site region 118608
Tssr118609 13 20796389 to 20796391 2 + TSS region transcription start site region 118609
Tssr118610 13 20796418 to 20796467 49 + TSS region transcription start site region 118610
Tssr118611 13 20796509 to 20796526 17 + TSS region transcription start site region 118611
Tssr118612 13 20797670 to 20797684 14 + TSS region transcription start site region 118612
Tssr118613 13 20799092 to 20799104 12 + TSS region transcription start site region 118613
Tssr118614 13 20800038 to 20800064 26 + TSS region transcription start site region 118614
Tssr118615 13 20801165 to 20801177 12 + TSS region transcription start site region 118615
Tssr118616 13 20801612 to 20801620 8 + TSS region transcription start site region 118616
Tssr118617 13 20801880 to 20801912 32 + TSS region transcription start site region 118617