Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:19219682-20354257

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163 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tcrg 13 19178042 to 19356476 178434 + complex/cluster/region T cell receptor gamma chain
Tcrg-V3 13 19242845 to 19243301 456 + gene segment T cell receptor gamma, variable 3
Tssr118528 13 19255556 to 19255579 23 + TSS region transcription start site region 118528
Tssr118529 13 19256862 to 19256909 47 + TSS region transcription start site region 118529
Tssr118530 13 19256988 to 19257004 16 + TSS region transcription start site region 118530
Tssr118531 13 19257103 to 19257107 4 + TSS region transcription start site region 118531
Trgj3 13 19257117 to 19257176 59 + gene segment T cell receptor gamma joining 3
Tcrg-C3 13 19260885 to 19263397 2512 + gene segment T cell receptor gamma, constant 3
Tssr121559 13 19304378 to 19304389 11 - TSS region transcription start site region 121559
Tssr121560 13 19304437 to 19304451 14 - TSS region transcription start site region 121560
Tssr121561 13 19304988 to 19304993 5 - TSS region transcription start site region 121561
Tcrg-C2 13 19305060 to 19307551 2491 - gene segment T-cell receptor gamma, constant 2
Tssr118532 13 19305123 to 19305173 50 + TSS region transcription start site region 118532
Tssr121562 13 19306161 to 19306183 22 - TSS region transcription start site region 121562
Tssr121563 13 19306302 to 19306316 14 - TSS region transcription start site region 121563
Tssr121564 13 19307368 to 19307376 8 - TSS region transcription start site region 121564
Tssr121565 13 19307860 to 19307891 31 - TSS region transcription start site region 121565
Tssr121566 13 19308034 to 19308039 5 - TSS region transcription start site region 121566
Tssr121567 13 19308521 to 19308534 13 - TSS region transcription start site region 121567
Tssr121568 13 19308552 to 19308563 11 - TSS region transcription start site region 121568
Trgj2 13 19311245 to 19311304 59 - gene segment T cell receptor gamma joining 2
Tssr121569 13 19311285 to 19311292 7 - TSS region transcription start site region 121569
Tssr121570 13 19311308 to 19311326 18 - TSS region transcription start site region 121570
Tssr121571 13 19311363 to 19311372 9 - TSS region transcription start site region 121571
Tssr121572 13 19311424 to 19311435 11 - TSS region transcription start site region 121572
Tssr121573 13 19311447 to 19311456 9 - TSS region transcription start site region 121573
Tssr121574 13 19311466 to 19311475 9 - TSS region transcription start site region 121574
Tssr121575 13 19311481 to 19311498 17 - TSS region transcription start site region 121575
Tssr121576 13 19311551 to 19311566 15 - TSS region transcription start site region 121576
Tssr121577 13 19311682 to 19311715 33 - TSS region transcription start site region 121577
Tssr118533 13 19336560 to 19336570 10 + TSS region transcription start site region 118533
Trgv2 13 19336573 to 19337026 453 - gene segment T cell receptor gamma variable 2
Tssr121578 13 19336825 to 19336831 6 - TSS region transcription start site region 121578
Tssr121579 13 19337035 to 19337044 9 - TSS region transcription start site region 121579
Tssr121580 13 19337047 to 19337075 28 - TSS region transcription start site region 121580
Tssr121581 13 19337126 to 19337133 7 - TSS region transcription start site region 121581
Tssr121582 13 19337179 to 19337190 11 - TSS region transcription start site region 121582
Tssr4004 13 19337250 to 19337271 21 + TSS region transcription start site region 4004
Tssr121583 13 19337286 to 19337296 10 - TSS region transcription start site region 121583
Tssr121584 13 19337327 to 19337336 9 - TSS region transcription start site region 121584
Tssr121585 13 19338744 to 19338755 11 - TSS region transcription start site region 121585
Tssr121586 13 19338763 to 19338775 12 - TSS region transcription start site region 121586
Tssr121587 13 19338781 to 19338795 14 - TSS region transcription start site region 121587
Tssr118534 13 19339816 to 19339829 13 + TSS region transcription start site region 118534
Tssr118535 13 19339846 to 19339863 17 + TSS region transcription start site region 118535
Tssr118536 13 19339867 to 19339876 9 + TSS region transcription start site region 118536
Tssr118537 13 19339970 to 19339981 11 + TSS region transcription start site region 118537
Tcrg-V1 13 19340016 to 19340454 438 + gene segment T cell receptor gamma, variable 1
Tssr118538 13 19340547 to 19340578 31 + TSS region transcription start site region 118538
Tssr118539 13 19341692 to 19341698 6 + TSS region transcription start site region 118539
Tssr121588 13 19341702 to 19341709 7 - TSS region transcription start site region 121588
Tssr118540 13 19341765 to 19341771 6 + TSS region transcription start site region 118540
Tssr118541 13 19341816 to 19341827 11 + TSS region transcription start site region 118541
Tssr118542 13 19341880 to 19341905 25 + TSS region transcription start site region 118542
Tssr118543 13 19341928 to 19341941 13 + TSS region transcription start site region 118543
Tssr118544 13 19341943 to 19341961 18 + TSS region transcription start site region 118544
Tssr118545 13 19341965 to 19341987 22 + TSS region transcription start site region 118545
Tssr118546 13 19342058 to 19342069 11 + TSS region transcription start site region 118546
Tssr118547 13 19342081 to 19342142 61 + TSS region transcription start site region 118547
Trgj4 13 19342152 to 19342212 60 + gene segment T cell receptor gamma joining 4
Tssr118548 13 19342154 to 19342161 7 + TSS region transcription start site region 118548
Tssr118549 13 19342727 to 19342739 12 + TSS region transcription start site region 118549
Tssr121589 13 19343258 to 19343266 8 - TSS region transcription start site region 121589
Tssr118550 13 19343442 to 19343459 17 + TSS region transcription start site region 118550
Tssr118551 13 19344200 to 19344233 33 + TSS region transcription start site region 118551
Tssr121590 13 19344324 to 19344348 24 - TSS region transcription start site region 121590
Tcrg-C4 13 19344558 to 19352343 7785 + gene segment T cell receptor gamma, constant 4
Tssr121591 13 19345189 to 19345231 42 - TSS region transcription start site region 121591
Tssr121592 13 19345769 to 19345799 30 - TSS region transcription start site region 121592
Tssr118552 13 19345956 to 19345967 11 + TSS region transcription start site region 118552
Tssr118553 13 19347086 to 19347090 4 + TSS region transcription start site region 118553
Tssr118554 13 19347538 to 19347554 16 + TSS region transcription start site region 118554
Tssr118555 13 19349035 to 19349050 15 + TSS region transcription start site region 118555
Tssr118556 13 19350300 to 19350328 28 + TSS region transcription start site region 118556
Tssr118557 13 19352348 to 19352366 18 + TSS region transcription start site region 118557
Tssr118558 13 19352406 to 19352422 16 + TSS region transcription start site region 118558
Tssr121593 13 19356176 to 19356182 6 - TSS region transcription start site region 121593
Tssr121594 13 19356280 to 19356305 25 - TSS region transcription start site region 121594
Tssr118559 13 19356528 to 19356551 23 + TSS region transcription start site region 118559
Tssr121595 13 19357300 to 19357311 11 - TSS region transcription start site region 121595
Tssr121596 13 19357343 to 19357399 56 - TSS region transcription start site region 121596
Tssr118560 13 19357521 to 19357540 19 + TSS region transcription start site region 118560
Stard3nl 13 19357676 to 19395795 38119 - protein coding gene STARD3 N-terminal like
Tssr121597 13 19357939 to 19357955 16 - TSS region transcription start site region 121597
Tssr118561 13 19358042 to 19358053 11 + TSS region transcription start site region 118561
Tssr118562 13 19358055 to 19358071 16 + TSS region transcription start site region 118562
Tssr121598 13 19358137 to 19358148 11 - TSS region transcription start site region 121598
Tssr121599 13 19358279 to 19358298 19 - TSS region transcription start site region 121599
Tssr121600 13 19358318 to 19358367 49 - TSS region transcription start site region 121600
Tssr118563 13 19358496 to 19358504 8 + TSS region transcription start site region 118563
Tssr121601 13 19358567 to 19358572 5 - TSS region transcription start site region 121601
Tssr121602 13 19358612 to 19358624 12 - TSS region transcription start site region 121602
D13Mit153 13 19381938 to 19382137 199 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 153
Tssr118564 13 19382611 to 19382617 6 + TSS region transcription start site region 118564
Gm42683 13 19393126 to 19395453 2327 - unclassified gene predicted gene 42683
Cpgi5304 13 19395316 to 19395972 656 CpG island CpG island 5304
Tssr121603 13 19395728 to 19395789 61 - TSS region transcription start site region 121603
Tssr121604 13 19395794 to 19395795 1 - TSS region transcription start site region 121604
Tssr118565 13 19395997 to 19396010 13 + TSS region transcription start site region 118565
Gm40827 13 19403876 to 19425573 21697 + lncRNA gene predicted gene, 40827
Gm18131 13 19412800 to 19413248 448 + pseudogene predicted gene, 18131
D13Mit219 13 19425510 to 19425778 268 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 219
9330199G10Rik 13 19462847 to 19504367 41520 - lincRNA gene RIKEN cDNA 9330199G10 gene
Gm18363 13 19525987 to 19526716 729 + pseudogene predicted gene, 18363
Epdr1 13 19591706 to 19619927 28221 - protein coding gene ependymin related protein 1 (zebrafish)
Cpgi5305 13 19619194 to 19619854 660 CpG island CpG island 5305
Tssr121605 13 19619758 to 19619811 53 - TSS region transcription start site region 121605
Tssr121606 13 19619820 to 19619827 7 - TSS region transcription start site region 121606
Cpgi5306 13 19622968 to 19623850 882 CpG island CpG island 5306
Tssr118566 13 19623163 to 19623183 20 + TSS region transcription start site region 118566
Sfrp4 13 19623175 to 19632825 9650 + protein coding gene secreted frizzled-related protein 4
Tssr118567 13 19623300 to 19623313 13 + TSS region transcription start site region 118567
Tssr118568 13 19623333 to 19623340 7 + TSS region transcription start site region 118568
D13Mit218 13 19629518 to 19629692 174 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 218
Nme8 13 19645078 to 19697794 52716 - protein coding gene NME/NM23 family member 8
Gm47606 13 19672382 to 19673934 1552 - unclassified gene predicted gene, 47606
Tssr121607 13 19697733 to 19697771 38 - TSS region transcription start site region 121607
Gpr141b 13 19727426 to 19732951 5525 - protein coding gene G protein-coupled receptor 141B
Tssr121608 13 19732730 to 19732755 25 - TSS region transcription start site region 121608
Tssr121609 13 19732800 to 19732815 15 - TSS region transcription start site region 121609
Tssr121610 13 19732929 to 19732954 25 - TSS region transcription start site region 121610
Gpr141 13 19749682 to 19824257 74575 - protein coding gene G protein-coupled receptor 141
Tssr121611 13 19774202 to 19774206 4 - TSS region transcription start site region 121611
Gm19154 13 19820778 to 19821654 876 + pseudogene predicted gene, 19154
Tssr121612 13 19824234 to 19824268 34 - TSS region transcription start site region 121612
Tssr121613 13 19927914 to 19927921 7 - TSS region transcription start site region 121613
Gm5446 13 19995021 to 19995804 783 - pseudogene predicted gene 5446
Cpgi5307 13 19995733 to 19995922 189 CpG island CpG island 5307
Tssr121614 13 20016502 to 20016506 4 - TSS region transcription start site region 121614
Cpgi5308 13 20090160 to 20091835 1675 CpG island CpG island 5308
Tssr118569 13 20090257 to 20090285 28 + TSS region transcription start site region 118569
Tssr118570 13 20090296 to 20090310 14 + TSS region transcription start site region 118570
Tssr118571 13 20090452 to 20090493 41 + TSS region transcription start site region 118571
Tssr118572 13 20090500 to 20090518 18 + TSS region transcription start site region 118572
Tssr118573 13 20090538 to 20090633 95 + TSS region transcription start site region 118573
Elmo1 13 20090596 to 20608353 517757 + protein coding gene engulfment and cell motility 1
Tssr118574 13 20090635 to 20090642 7 + TSS region transcription start site region 118574
Tssr118575 13 20090644 to 20090655 11 + TSS region transcription start site region 118575
Tssr118576 13 20090664 to 20090679 15 + TSS region transcription start site region 118576
Tssr121615 13 20091197 to 20091208 11 - TSS region transcription start site region 121615
Tssr121616 13 20091520 to 20091527 7 - TSS region transcription start site region 121616
Tssr118577 13 20096011 to 20096037 26 + TSS region transcription start site region 118577
Tssr118578 13 20098186 to 20098189 3 + TSS region transcription start site region 118578
Tssr118579 13 20111504 to 20111515 11 + TSS region transcription start site region 118579
Tssr118580 13 20184940 to 20184989 49 + TSS region transcription start site region 118580
Tssr118581 13 20184998 to 20185011 13 + TSS region transcription start site region 118581
Cpgi5309 13 20185250 to 20185516 266 CpG island CpG island 5309
Tssr118582 13 20185287 to 20185301 14 + TSS region transcription start site region 118582
Tssr118583 13 20185322 to 20185364 42 + TSS region transcription start site region 118583
Tssr118584 13 20185403 to 20185410 7 + TSS region transcription start site region 118584
Tssr118585 13 20185416 to 20185427 11 + TSS region transcription start site region 118585
Tssr118586 13 20204424 to 20204434 10 + TSS region transcription start site region 118586
Tssr121617 13 20228436 to 20228440 4 - TSS region transcription start site region 121617
Tssr118587 13 20240806 to 20240814 8 + TSS region transcription start site region 118587
D13Dcr5 13 20255418 to 20255513 95 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 5
Gm47665 13 20271905 to 20274039 2134 + unclassified gene predicted gene, 47665
D13Mit16 13 20293442 to 20293650 208 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 16
Bmd3 13 20293442 to 20293650 208 QTL bone mineral density 3
Heal24 13 20293442 to 20293650 208 QTL wound healing/regeneration
Heal23 13 20293442 to 20293650 208 QTL wound healing/regeneration 23
Sysbp2 13 20293442 to 59673791 39380349 QTL systolic blood pressure 2
Tssr118588 13 20352937 to 20352942 5 + TSS region transcription start site region 118588
Mvwf4 13 112761890 to 20293442 -92468448 QTL modifier of von Willebrand factor 4