Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:18617982-19279060

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48829 13 18640257 to 18645349 5092 - lincRNA gene predicted gene, 48829
Tssr118499 13 18717289 to 18717316 27 + TSS region transcription start site region 118499
Vps41 13 18717292 to 18866811 149519 + protein coding gene VPS41 HOPS complex subunit
Cpgi5302 13 18717293 to 18717524 231 CpG island CpG island 5302
Tssr118500 13 18717680 to 18717687 7 + TSS region transcription start site region 118500
Tssr4003 13 18745098 to 18745112 14 + TSS region transcription start site region 4003
Tssr118501 13 18781417 to 18781435 18 + TSS region transcription start site region 118501
Tssr118502 13 18842141 to 18842163 22 + TSS region transcription start site region 118502
Gm26172 13 18922577 to 18922710 133 + snoRNA gene predicted gene, 26172
Cpgi5303 13 18947982 to 18949060 1078 CpG island CpG island 5303
Amph 13 18948205 to 19150921 202716 + protein coding gene amphiphysin
Tssr118503 13 18948344 to 18948417 73 + TSS region transcription start site region 118503
Tssr118504 13 18957932 to 18957942 10 + TSS region transcription start site region 118504
Gm47658 13 18971702 to 18974997 3295 - antisense lncRNA gene predicted gene, 47658
Gm47659 13 18973460 to 18974141 681 + pseudogene predicted gene, 47659
Gm18065 13 18983930 to 18984455 525 + pseudogene predicted gene, 18065
Gm47661 13 19029940 to 19057896 27956 - antisense lncRNA gene predicted gene, 47661
Gm47660 13 19071197 to 19071575 378 - pseudogene predicted gene, 47660
Gm31887 13 19162036 to 19193558 31522 - antisense lncRNA gene predicted gene, 31887
Tssr118505 13 19177905 to 19177930 25 + TSS region transcription start site region 118505
Tcrg-V7 13 19178042 to 19178492 450 + gene segment T cell receptor gamma, variable 7
Tcrg 13 19178042 to 19356476 178434 + complex/cluster/region T cell receptor gamma chain
Tssr121545 13 19182356 to 19182369 13 - TSS region transcription start site region 121545
Tssr118506 13 19184927 to 19184981 54 + TSS region transcription start site region 118506
Tcrg-V4 13 19184981 to 19185506 525 + gene segment T cell receptor gamma, variable 4
Tssr118507 13 19184986 to 19184998 12 + TSS region transcription start site region 118507
Tssr118508 13 19185005 to 19185022 17 + TSS region transcription start site region 118508
Tssr118509 13 19185037 to 19185048 11 + TSS region transcription start site region 118509
Tssr118510 13 19185095 to 19185106 11 + TSS region transcription start site region 118510
Tssr121546 13 19185506 to 19185518 12 - TSS region transcription start site region 121546
Tssr121547 13 19188609 to 19188615 6 - TSS region transcription start site region 121547
Tssr118511 13 19190333 to 19190349 16 + TSS region transcription start site region 118511
Tcrg-V6 13 19190368 to 19190929 561 + gene segment T cell receptor gamma, variable 6
Tssr118512 13 19190701 to 19190714 13 + TSS region transcription start site region 118512
Tssr118513 13 19190717 to 19190731 14 + TSS region transcription start site region 118513
Tssr118514 13 19190860 to 19190877 17 + TSS region transcription start site region 118514
Tssr118515 13 19192190 to 19192197 7 + TSS region transcription start site region 118515
Tssr118516 13 19192216 to 19192219 3 + TSS region transcription start site region 118516
Tssr118517 13 19192235 to 19192251 16 + TSS region transcription start site region 118517
Tssr118518 13 19192256 to 19192263 7 + TSS region transcription start site region 118518
Tcrg-V5 13 19192278 to 19192725 447 + gene segment T cell receptor gamma, variable 5
Tssr118519 13 19192519 to 19192529 10 + TSS region transcription start site region 118519
Tssr118520 13 19192664 to 19192674 10 + TSS region transcription start site region 118520
Tssr118521 13 19192680 to 19192687 7 + TSS region transcription start site region 118521
Tssr121548 13 19192703 to 19192708 5 - TSS region transcription start site region 121548
Tssr121549 13 19192737 to 19192749 12 - TSS region transcription start site region 121549
Tssr121550 13 19192759 to 19192771 12 - TSS region transcription start site region 121550
Tssr121551 13 19192791 to 19192803 12 - TSS region transcription start site region 121551
Tssr121552 13 19192846 to 19192849 3 - TSS region transcription start site region 121552
Tssr118522 13 19192904 to 19192945 41 + TSS region transcription start site region 118522
Tssr121553 13 19193495 to 19193514 19 - TSS region transcription start site region 121553
Tssr121554 13 19193553 to 19193570 17 - TSS region transcription start site region 121554
Tssr121555 13 19193585 to 19193598 13 - TSS region transcription start site region 121555
Tssr121556 13 19193601 to 19193608 7 - TSS region transcription start site region 121556
Tssr121557 13 19193613 to 19193622 9 - TSS region transcription start site region 121557
Tssr121558 13 19193678 to 19193682 4 - TSS region transcription start site region 121558
Tssr118523 13 19194062 to 19194108 46 + TSS region transcription start site region 118523
Tssr118524 13 19208819 to 19208839 20 + TSS region transcription start site region 118524
Tssr118525 13 19210314 to 19210330 16 + TSS region transcription start site region 118525
Trgj1 13 19210343 to 19210402 59 + gene segment T cell receptor gamma joining 1
Tssr118526 13 19213651 to 19213673 22 + TSS region transcription start site region 118526
Tcrg-C1 13 19214103 to 19216618 2515 + gene segment T cell receptor gamma, constant 1
Tssr118527 13 19214280 to 19214283 3 + TSS region transcription start site region 118527
Tcrg-V3 13 19242845 to 19243301 456 + gene segment T cell receptor gamma, variable 3
Tssr118528 13 19255556 to 19255579 23 + TSS region transcription start site region 118528
Tssr118529 13 19256862 to 19256909 47 + TSS region transcription start site region 118529
Tssr118530 13 19256988 to 19257004 16 + TSS region transcription start site region 118530
Tssr118531 13 19257103 to 19257107 4 + TSS region transcription start site region 118531
Trgj3 13 19257117 to 19257176 59 + gene segment T cell receptor gamma joining 3
Tcrg-C3 13 19260885 to 19263397 2512 + gene segment T cell receptor gamma, constant 3