Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000


Click here to work with the entire chromosomal region 13:17866702-20079997

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225 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some
Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D13Mit238 13 17870596 to 17870705 109 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 238
Rala 13 17880575 to 17944217 63642 - protein coding gene v-ral simian leukemia viral oncogene A (ras related)
Tssr121536 13 17888573 to 17888586 13 - TSS region transcription start site region 121536
Tssr121537 13 17893171 to 17893189 18 - TSS region transcription start site region 121537
Gm18362 13 17894868 to 17895371 503 + pseudogene predicted gene, 18362
Gm48754 13 17932386 to 17938434 6048 + antisense lncRNA gene predicted gene, 48754
Tssr121538 13 17939982 to 17940012 30 - TSS region transcription start site region 121538
Cpgi5299 13 17943460 to 17944716 1256 CpG island CpG island 5299
Tssr121539 13 17944137 to 17944142 5 - TSS region transcription start site region 121539
Tssr121540 13 17944151 to 17944239 88 - TSS region transcription start site region 121540
Tssr118496 13 17944259 to 17944299 40 + TSS region transcription start site region 118496
Gm32699 13 17944291 to 17946278 1987 + protein coding gene predicted gene, 32699
Gm5628 13 17949908 to 17950956 1048 + pseudogene predicted gene 5628
A930027P06Rik 13 17951938 to 17954912 2974 + unclassified gene RIKEN cDNA A930027P06 gene
Gm48776 13 17960852 to 17961416 564 - pseudogene predicted gene, 48776
Gm48778 13 17961150 to 17992533 31383 - unclassified non-coding RNA gene predicted gene, 48778
Tssr118497 13 17967336 to 17967343 7 + TSS region transcription start site region 118497
Yae1d1 13 17986640 to 17993351 6711 - protein coding gene Yae1 domain containing 1
Cpgi5300 13 17992799 to 17993599 800 CpG island CpG island 5300
Tssr121541 13 17993306 to 17993362 56 - TSS region transcription start site region 121541
Gm48799 13 18002310 to 18008344 6034 - lincRNA gene predicted gene, 48799
Vdac3-ps1 13 18030741 to 18031593 852 - pseudogene voltage-dependent anion channel 3, pseudogene 1
Tssr121542 13 18031616 to 18031626 10 - TSS region transcription start site region 121542
Gm6575 13 18038561 to 18039257 696 + pseudogene predicted gene 6575
4930448F12Rik 13 18084947 to 18100202 15255 - lincRNA gene RIKEN cDNA 4930448F12 gene
Gm48800 13 18094472 to 18095954 1482 - pseudogene predicted gene, 48800
Tssr118498 13 18101821 to 18101828 7 + TSS region transcription start site region 118498
Pou6f2 13 18124960 to 18382044 257084 - protein coding gene POU domain, class 6, transcription factor 2
Cpgi5301 13 18211392 to 18211547 155 CpG island CpG island 5301
Gm31832 13 18281144 to 18284357 3213 + lncRNA gene predicted gene, 31832
Mcsq4 13 18322000 to 39773000 21451000 QTL methacholine sensitivity QTL 4, final
Gm46402 13 18340269 to 18346639 6370 - lncRNA gene predicted gene, 46402
Tssr121543 13 18378455 to 18378458 3 - TSS region transcription start site region 121543
Tssr121544 13 18397801 to 18397832 31 - TSS region transcription start site region 121544
Gm48829 13 18640257 to 18645349 5092 - lincRNA gene predicted gene, 48829
Tssr118499 13 18717289 to 18717316 27 + TSS region transcription start site region 118499
Vps41 13 18717292 to 18866811 149519 + protein coding gene VPS41 HOPS complex subunit
Cpgi5302 13 18717293 to 18717524 231 CpG island CpG island 5302
Tssr118500 13 18717680 to 18717687 7 + TSS region transcription start site region 118500
Tssr4003 13 18745098 to 18745112 14 + TSS region transcription start site region 4003
Tssr118501 13 18781417 to 18781435 18 + TSS region transcription start site region 118501
Tssr118502 13 18842141 to 18842163 22 + TSS region transcription start site region 118502
Gm26172 13 18922577 to 18922710 133 + snoRNA gene predicted gene, 26172
Cpgi5303 13 18947982 to 18949060 1078 CpG island CpG island 5303
Amph 13 18948205 to 19150921 202716 + protein coding gene amphiphysin
Tssr118503 13 18948344 to 18948417 73 + TSS region transcription start site region 118503
Tssr118504 13 18957932 to 18957942 10 + TSS region transcription start site region 118504
Gm47658 13 18971702 to 18974997 3295 - antisense lncRNA gene predicted gene, 47658
Gm47659 13 18973460 to 18974141 681 + pseudogene predicted gene, 47659
Gm18065 13 18983930 to 18984455 525 + pseudogene predicted gene, 18065
Gm47661 13 19029940 to 19057896 27956 - antisense lncRNA gene predicted gene, 47661
Gm47660 13 19071197 to 19071575 378 - pseudogene predicted gene, 47660
Gm31887 13 19162036 to 19193558 31522 - antisense lncRNA gene predicted gene, 31887
Tssr118505 13 19177905 to 19177930 25 + TSS region transcription start site region 118505
Tcrg-V7 13 19178042 to 19178492 450 + gene segment T cell receptor gamma, variable 7
Tcrg 13 19178042 to 19356476 178434 + complex/cluster/region T cell receptor gamma chain
Tssr121545 13 19182356 to 19182369 13 - TSS region transcription start site region 121545
Tssr118506 13 19184927 to 19184981 54 + TSS region transcription start site region 118506
Tcrg-V4 13 19184981 to 19185506 525 + gene segment T cell receptor gamma, variable 4
Tssr118507 13 19184986 to 19184998 12 + TSS region transcription start site region 118507
Tssr118508 13 19185005 to 19185022 17 + TSS region transcription start site region 118508
Tssr118509 13 19185037 to 19185048 11 + TSS region transcription start site region 118509
Tssr118510 13 19185095 to 19185106 11 + TSS region transcription start site region 118510
Tssr121546 13 19185506 to 19185518 12 - TSS region transcription start site region 121546
Tssr121547 13 19188609 to 19188615 6 - TSS region transcription start site region 121547
Tssr118511 13 19190333 to 19190349 16 + TSS region transcription start site region 118511
Tcrg-V6 13 19190368 to 19190929 561 + gene segment T cell receptor gamma, variable 6
Tssr118512 13 19190701 to 19190714 13 + TSS region transcription start site region 118512
Tssr118513 13 19190717 to 19190731 14 + TSS region transcription start site region 118513
Tssr118514 13 19190860 to 19190877 17 + TSS region transcription start site region 118514
Tssr118515 13 19192190 to 19192197 7 + TSS region transcription start site region 118515
Tssr118516 13 19192216 to 19192219 3 + TSS region transcription start site region 118516
Tssr118517 13 19192235 to 19192251 16 + TSS region transcription start site region 118517
Tssr118518 13 19192256 to 19192263 7 + TSS region transcription start site region 118518
Tcrg-V5 13 19192278 to 19192725 447 + gene segment T cell receptor gamma, variable 5
Tssr118519 13 19192519 to 19192529 10 + TSS region transcription start site region 118519
Tssr118520 13 19192664 to 19192674 10 + TSS region transcription start site region 118520
Tssr118521 13 19192680 to 19192687 7 + TSS region transcription start site region 118521
Tssr121548 13 19192703 to 19192708 5 - TSS region transcription start site region 121548
Tssr121549 13 19192737 to 19192749 12 - TSS region transcription start site region 121549
Tssr121550 13 19192759 to 19192771 12 - TSS region transcription start site region 121550
Tssr121551 13 19192791 to 19192803 12 - TSS region transcription start site region 121551
Tssr121552 13 19192846 to 19192849 3 - TSS region transcription start site region 121552
Tssr118522 13 19192904 to 19192945 41 + TSS region transcription start site region 118522
Tssr121553 13 19193495 to 19193514 19 - TSS region transcription start site region 121553
Tssr121554 13 19193553 to 19193570 17 - TSS region transcription start site region 121554
Tssr121555 13 19193585 to 19193598 13 - TSS region transcription start site region 121555
Tssr121556 13 19193601 to 19193608 7 - TSS region transcription start site region 121556
Tssr121557 13 19193613 to 19193622 9 - TSS region transcription start site region 121557
Tssr121558 13 19193678 to 19193682 4 - TSS region transcription start site region 121558
Tssr118523 13 19194062 to 19194108 46 + TSS region transcription start site region 118523
Tssr118524 13 19208819 to 19208839 20 + TSS region transcription start site region 118524
Tssr118525 13 19210314 to 19210330 16 + TSS region transcription start site region 118525
Trgj1 13 19210343 to 19210402 59 + gene segment T cell receptor gamma joining 1
Tssr118526 13 19213651 to 19213673 22 + TSS region transcription start site region 118526
Tcrg-C1 13 19214103 to 19216618 2515 + gene segment T cell receptor gamma, constant 1
Tssr118527 13 19214280 to 19214283 3 + TSS region transcription start site region 118527
Tcrg-V3 13 19242845 to 19243301 456 + gene segment T cell receptor gamma, variable 3
Tssr118528 13 19255556 to 19255579 23 + TSS region transcription start site region 118528
Tssr118529 13 19256862 to 19256909 47 + TSS region transcription start site region 118529
Tssr118530 13 19256988 to 19257004 16 + TSS region transcription start site region 118530
Tssr118531 13 19257103 to 19257107 4 + TSS region transcription start site region 118531
Trgj3 13 19257117 to 19257176 59 + gene segment T cell receptor gamma joining 3
Tcrg-C3 13 19260885 to 19263397 2512 + gene segment T cell receptor gamma, constant 3
Tssr121559 13 19304378 to 19304389 11 - TSS region transcription start site region 121559
Tssr121560 13 19304437 to 19304451 14 - TSS region transcription start site region 121560
Tssr121561 13 19304988 to 19304993 5 - TSS region transcription start site region 121561
Tcrg-C2 13 19305060 to 19307551 2491 - gene segment T-cell receptor gamma, constant 2
Tssr118532 13 19305123 to 19305173 50 + TSS region transcription start site region 118532
Tssr121562 13 19306161 to 19306183 22 - TSS region transcription start site region 121562
Tssr121563 13 19306302 to 19306316 14 - TSS region transcription start site region 121563
Tssr121564 13 19307368 to 19307376 8 - TSS region transcription start site region 121564
Tssr121565 13 19307860 to 19307891 31 - TSS region transcription start site region 121565
Tssr121566 13 19308034 to 19308039 5 - TSS region transcription start site region 121566
Tssr121567 13 19308521 to 19308534 13 - TSS region transcription start site region 121567
Tssr121568 13 19308552 to 19308563 11 - TSS region transcription start site region 121568
Trgj2 13 19311245 to 19311304 59 - gene segment T cell receptor gamma joining 2
Tssr121569 13 19311285 to 19311292 7 - TSS region transcription start site region 121569
Tssr121570 13 19311308 to 19311326 18 - TSS region transcription start site region 121570
Tssr121571 13 19311363 to 19311372 9 - TSS region transcription start site region 121571
Tssr121572 13 19311424 to 19311435 11 - TSS region transcription start site region 121572
Tssr121573 13 19311447 to 19311456 9 - TSS region transcription start site region 121573
Tssr121574 13 19311466 to 19311475 9 - TSS region transcription start site region 121574
Tssr121575 13 19311481 to 19311498 17 - TSS region transcription start site region 121575
Tssr121576 13 19311551 to 19311566 15 - TSS region transcription start site region 121576
Tssr121577 13 19311682 to 19311715 33 - TSS region transcription start site region 121577
Tssr118533 13 19336560 to 19336570 10 + TSS region transcription start site region 118533
Trgv2 13 19336573 to 19337026 453 - gene segment T cell receptor gamma variable 2
Tssr121578 13 19336825 to 19336831 6 - TSS region transcription start site region 121578
Tssr121579 13 19337035 to 19337044 9 - TSS region transcription start site region 121579
Tssr121580 13 19337047 to 19337075 28 - TSS region transcription start site region 121580
Tssr121581 13 19337126 to 19337133 7 - TSS region transcription start site region 121581
Tssr121582 13 19337179 to 19337190 11 - TSS region transcription start site region 121582
Tssr4004 13 19337250 to 19337271 21 + TSS region transcription start site region 4004
Tssr121583 13 19337286 to 19337296 10 - TSS region transcription start site region 121583
Tssr121584 13 19337327 to 19337336 9 - TSS region transcription start site region 121584
Tssr121585 13 19338744 to 19338755 11 - TSS region transcription start site region 121585
Tssr121586 13 19338763 to 19338775 12 - TSS region transcription start site region 121586
Tssr121587 13 19338781 to 19338795 14 - TSS region transcription start site region 121587
Tssr118534 13 19339816 to 19339829 13 + TSS region transcription start site region 118534
Tssr118535 13 19339846 to 19339863 17 + TSS region transcription start site region 118535
Tssr118536 13 19339867 to 19339876 9 + TSS region transcription start site region 118536
Tssr118537 13 19339970 to 19339981 11 + TSS region transcription start site region 118537
Tcrg-V1 13 19340016 to 19340454 438 + gene segment T cell receptor gamma, variable 1
Tssr118538 13 19340547 to 19340578 31 + TSS region transcription start site region 118538
Tssr118539 13 19341692 to 19341698 6 + TSS region transcription start site region 118539
Tssr121588 13 19341702 to 19341709 7 - TSS region transcription start site region 121588
Tssr118540 13 19341765 to 19341771 6 + TSS region transcription start site region 118540
Tssr118541 13 19341816 to 19341827 11 + TSS region transcription start site region 118541
Tssr118542 13 19341880 to 19341905 25 + TSS region transcription start site region 118542
Tssr118543 13 19341928 to 19341941 13 + TSS region transcription start site region 118543
Tssr118544 13 19341943 to 19341961 18 + TSS region transcription start site region 118544
Tssr118545 13 19341965 to 19341987 22 + TSS region transcription start site region 118545
Tssr118546 13 19342058 to 19342069 11 + TSS region transcription start site region 118546
Tssr118547 13 19342081 to 19342142 61 + TSS region transcription start site region 118547
Trgj4 13 19342152 to 19342212 60 + gene segment T cell receptor gamma joining 4
Tssr118548 13 19342154 to 19342161 7 + TSS region transcription start site region 118548
Tssr118549 13 19342727 to 19342739 12 + TSS region transcription start site region 118549
Tssr121589 13 19343258 to 19343266 8 - TSS region transcription start site region 121589
Tssr118550 13 19343442 to 19343459 17 + TSS region transcription start site region 118550
Tssr118551 13 19344200 to 19344233 33 + TSS region transcription start site region 118551
Tssr121590 13 19344324 to 19344348 24 - TSS region transcription start site region 121590
Tcrg-C4 13 19344558 to 19352343 7785 + gene segment T cell receptor gamma, constant 4
Tssr121591 13 19345189 to 19345231 42 - TSS region transcription start site region 121591
Tssr121592 13 19345769 to 19345799 30 - TSS region transcription start site region 121592
Tssr118552 13 19345956 to 19345967 11 + TSS region transcription start site region 118552
Tssr118553 13 19347086 to 19347090 4 + TSS region transcription start site region 118553
Tssr118554 13 19347538 to 19347554 16 + TSS region transcription start site region 118554
Tssr118555 13 19349035 to 19349050 15 + TSS region transcription start site region 118555
Tssr118556 13 19350300 to 19350328 28 + TSS region transcription start site region 118556
Tssr118557 13 19352348 to 19352366 18 + TSS region transcription start site region 118557
Tssr118558 13 19352406 to 19352422 16 + TSS region transcription start site region 118558
Tssr121593 13 19356176 to 19356182 6 - TSS region transcription start site region 121593
Tssr121594 13 19356280 to 19356305 25 - TSS region transcription start site region 121594
Tssr118559 13 19356528 to 19356551 23 + TSS region transcription start site region 118559
Tssr121595 13 19357300 to 19357311 11 - TSS region transcription start site region 121595
Tssr121596 13 19357343 to 19357399 56 - TSS region transcription start site region 121596
Tssr118560 13 19357521 to 19357540 19 + TSS region transcription start site region 118560
Stard3nl 13 19357676 to 19395795 38119 - protein coding gene STARD3 N-terminal like
Tssr121597 13 19357939 to 19357955 16 - TSS region transcription start site region 121597
Tssr118561 13 19358042 to 19358053 11 + TSS region transcription start site region 118561
Tssr118562 13 19358055 to 19358071 16 + TSS region transcription start site region 118562
Tssr121598 13 19358137 to 19358148 11 - TSS region transcription start site region 121598
Tssr121599 13 19358279 to 19358298 19 - TSS region transcription start site region 121599
Tssr121600 13 19358318 to 19358367 49 - TSS region transcription start site region 121600
Tssr118563 13 19358496 to 19358504 8 + TSS region transcription start site region 118563
Tssr121601 13 19358567 to 19358572 5 - TSS region transcription start site region 121601
Tssr121602 13 19358612 to 19358624 12 - TSS region transcription start site region 121602
D13Mit153 13 19381938 to 19382137 199 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 153
Tssr118564 13 19382611 to 19382617 6 + TSS region transcription start site region 118564
Gm42683 13 19393126 to 19395453 2327 - unclassified gene predicted gene 42683
Cpgi5304 13 19395316 to 19395972 656 CpG island CpG island 5304
Tssr121603 13 19395728 to 19395789 61 - TSS region transcription start site region 121603
Tssr121604 13 19395794 to 19395795 1 - TSS region transcription start site region 121604
Tssr118565 13 19395997 to 19396010 13 + TSS region transcription start site region 118565
Gm40827 13 19403876 to 19425573 21697 + lncRNA gene predicted gene, 40827
Gm18131 13 19412800 to 19413248 448 + pseudogene predicted gene, 18131
D13Mit219 13 19425510 to 19425778 268 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 219
9330199G10Rik 13 19462847 to 19504367 41520 - lincRNA gene RIKEN cDNA 9330199G10 gene
Gm18363 13 19525987 to 19526716 729 + pseudogene predicted gene, 18363