Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:17110790-17770896

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30 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sugct 13 16857472 to 17694795 837323 - protein coding gene succinyl-CoA glutarate-CoA transferase
Gm25020 13 17206021 to 17206127 106 + snRNA gene predicted gene, 25020
Tssr121521 13 17215511 to 17215550 39 - TSS region transcription start site region 121521
Gm48502 13 17258771 to 17261641 2870 + unclassified gene predicted gene, 48502
Tssr118485 13 17310878 to 17310882 4 + TSS region transcription start site region 118485
Gm17890 13 17337599 to 17338355 756 + pseudogene predicted gene, 17890
Gm48501 13 17360294 to 17364134 3840 + pseudogene predicted gene, 48501
Gm24873 13 17440790 to 17440896 106 + snRNA gene predicted gene, 24873
D13Mit303 13 17510067 to 17510189 122 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 303
Gm40826 13 17682710 to 17685778 3068 - lncRNA gene predicted gene, 40826
Cpgi5297 13 17694536 to 17695912 1376 CpG island CpG island 5297
Tssr118486 13 17694621 to 17694630 9 + TSS region transcription start site region 118486
Tssr121522 13 17694729 to 17694786 57 - TSS region transcription start site region 121522
Tssr118487 13 17694914 to 17694929 15 + TSS region transcription start site region 118487
Tssr118488 13 17695029 to 17695040 11 + TSS region transcription start site region 118488
Tssr118489 13 17695143 to 17695213 70 + TSS region transcription start site region 118489
Tssr118490 13 17695259 to 17695270 11 + TSS region transcription start site region 118490
Tssr118491 13 17695409 to 17695436 27 + TSS region transcription start site region 118491
Mplkip 13 17695413 to 17699105 3692 + protein coding gene M-phase specific PLK1 intereacting protein
Tssr118492 13 17695438 to 17695454 16 + TSS region transcription start site region 118492
Tssr118493 13 17700346 to 17700350 4 + TSS region transcription start site region 118493
Gm48621 13 17708603 to 17709864 1261 - unclassified gene predicted gene, 48621
Tssr118494 13 17711160 to 17711165 5 + TSS region transcription start site region 118494
Cdk13 13 17715962 to 17805097 89135 - protein coding gene cyclin-dependent kinase 13
8430406P12Rik 13 17735985 to 17737054 1069 - unclassified gene RIKEN cDNA 8430406P12 gene
Tssr121523 13 17742757 to 17742760 3 - TSS region transcription start site region 121523
Tssr121524 13 17744052 to 17744055 3 - TSS region transcription start site region 121524
Mir466i 13 17747473 to 17747593 120 + miRNA gene microRNA 466i
Tssr121525 13 17752978 to 17752986 8 - TSS region transcription start site region 121525
Gm48624 13 17754516 to 17757325 2809 - unclassified gene predicted gene, 48624