Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:16807472-17744795

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sugct 13 16857472 to 17694795 837323 - protein coding gene succinyl-CoA glutarate-CoA transferase
Gm26098 13 16859185 to 16859472 287 - unclassified non-coding RNA gene predicted gene, 26098
Tssr4001 13 16910931 to 16910932 1 + TSS region transcription start site region 4001
Gm48503 13 16937609 to 16947045 9436 + antisense lncRNA gene predicted gene, 48503
Gm48499 13 16943846 to 16945569 1723 + pseudogene predicted gene, 48499
Cd4ts6 13 16993960 to 16994099 139 QTL CD4 T cell subset 6
Igmsc1 13 16993960 to 44765084 27771124 QTL immunoglobulin M secreting cells 1
D13Mit57 13 16993960 to 16994099 139 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 57
D13Mit174 13 17014923 to 17015046 123 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 174
Pbd2 13 17014923 to 38763430 21748507 QTL peak bone density 2
Eosn2 13 17046726 to 17046726 0 QTL eosinophil differential 2
Gm27043 13 17050921 to 17051878 957 + pseudogene predicted gene, 27043
Gm25020 13 17206021 to 17206127 106 + snRNA gene predicted gene, 25020
Tssr121521 13 17215511 to 17215550 39 - TSS region transcription start site region 121521
Gm48502 13 17258771 to 17261641 2870 + unclassified gene predicted gene, 48502
Tssr118485 13 17310878 to 17310882 4 + TSS region transcription start site region 118485
Gm17890 13 17337599 to 17338355 756 + pseudogene predicted gene, 17890
Gm48501 13 17360294 to 17364134 3840 + pseudogene predicted gene, 48501
Gm24873 13 17440790 to 17440896 106 + snRNA gene predicted gene, 24873
D13Mit303 13 17510067 to 17510189 122 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 303
Gm40826 13 17682710 to 17685778 3068 - lncRNA gene predicted gene, 40826
Cpgi5297 13 17694536 to 17695912 1376 CpG island CpG island 5297
Tssr118486 13 17694621 to 17694630 9 + TSS region transcription start site region 118486
Tssr121522 13 17694729 to 17694786 57 - TSS region transcription start site region 121522
Tssr118487 13 17694914 to 17694929 15 + TSS region transcription start site region 118487
Tssr118488 13 17695029 to 17695040 11 + TSS region transcription start site region 118488
Tssr118489 13 17695143 to 17695213 70 + TSS region transcription start site region 118489
Tssr118490 13 17695259 to 17695270 11 + TSS region transcription start site region 118490
Tssr118491 13 17695409 to 17695436 27 + TSS region transcription start site region 118491
Mplkip 13 17695413 to 17699105 3692 + protein coding gene M-phase specific PLK1 intereacting protein
Tssr118492 13 17695438 to 17695454 16 + TSS region transcription start site region 118492
Tssr118493 13 17700346 to 17700350 4 + TSS region transcription start site region 118493
Gm48621 13 17708603 to 17709864 1261 - unclassified gene predicted gene, 48621
Tssr118494 13 17711160 to 17711165 5 + TSS region transcription start site region 118494
Cdk13 13 17715962 to 17805097 89135 - protein coding gene cyclin-dependent kinase 13
8430406P12Rik 13 17735985 to 17737054 1069 - unclassified gene RIKEN cDNA 8430406P12 gene
Tssr121523 13 17742757 to 17742760 3 - TSS region transcription start site region 121523
Tssr121524 13 17744052 to 17744055 3 - TSS region transcription start site region 121524