Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:16279052-19209055

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158 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm48492 13 16368944 to 16373180 4236 - lincRNA gene predicted gene, 48492
Gm48493 13 16385919 to 16389759 3840 - pseudogene predicted gene, 48493
Gm48494 13 16390591 to 16390854 263 + pseudogene predicted gene, 48494
Gm48496 13 16431525 to 16431780 255 - pseudogene predicted gene, 48496
D13Mit207 13 16434362 to 16434497 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 207
Gm48497 13 16533539 to 16533821 282 - pseudogene predicted gene, 48497
D13Mit162 13 16565875 to 16565977 102 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 162
Gm7537 13 16638077 to 16639490 1413 - pseudogene predicted gene 7537
Tssr118484 13 16756178 to 16756182 4 + TSS region transcription start site region 118484
D13Mit305 13 16779372 to 16779487 115 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 305
Sugct 13 16857472 to 17694795 837323 - protein coding gene succinyl-CoA glutarate-CoA transferase
Gm26098 13 16859185 to 16859472 287 - unclassified non-coding RNA gene predicted gene, 26098
Tssr4001 13 16910931 to 16910932 1 + TSS region transcription start site region 4001
Gm48503 13 16937609 to 16947045 9436 + antisense lncRNA gene predicted gene, 48503
Gm48499 13 16943846 to 16945569 1723 + pseudogene predicted gene, 48499
Cd4ts6 13 16993960 to 16994099 139 QTL CD4 T cell subset 6
D13Mit57 13 16993960 to 16994099 139 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 57
Igmsc1 13 16993960 to 44765084 27771124 QTL immunoglobulin M secreting cells 1
Pbd2 13 17014923 to 38763430 21748507 QTL peak bone density 2
D13Mit174 13 17014923 to 17015046 123 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 174
Eosn2 13 17046726 to 17046726 0 QTL eosinophil differential 2
Gm27043 13 17050921 to 17051878 957 + pseudogene predicted gene, 27043
Gm25020 13 17206021 to 17206127 106 + snRNA gene predicted gene, 25020
Tssr121521 13 17215511 to 17215550 39 - TSS region transcription start site region 121521
Gm48502 13 17258771 to 17261641 2870 + unclassified gene predicted gene, 48502
Tssr118485 13 17310878 to 17310882 4 + TSS region transcription start site region 118485
Gm17890 13 17337599 to 17338355 756 + pseudogene predicted gene, 17890
Gm48501 13 17360294 to 17364134 3840 + pseudogene predicted gene, 48501
Gm24873 13 17440790 to 17440896 106 + snRNA gene predicted gene, 24873
D13Mit303 13 17510067 to 17510189 122 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 303
Gm40826 13 17682710 to 17685778 3068 - lncRNA gene predicted gene, 40826
Cpgi5297 13 17694536 to 17695912 1376 CpG island CpG island 5297
Tssr118486 13 17694621 to 17694630 9 + TSS region transcription start site region 118486
Tssr121522 13 17694729 to 17694786 57 - TSS region transcription start site region 121522
Tssr118487 13 17694914 to 17694929 15 + TSS region transcription start site region 118487
Tssr118488 13 17695029 to 17695040 11 + TSS region transcription start site region 118488
Tssr118489 13 17695143 to 17695213 70 + TSS region transcription start site region 118489
Tssr118490 13 17695259 to 17695270 11 + TSS region transcription start site region 118490
Tssr118491 13 17695409 to 17695436 27 + TSS region transcription start site region 118491
Mplkip 13 17695413 to 17699105 3692 + protein coding gene M-phase specific PLK1 intereacting protein
Tssr118492 13 17695438 to 17695454 16 + TSS region transcription start site region 118492
Tssr118493 13 17700346 to 17700350 4 + TSS region transcription start site region 118493
Gm48621 13 17708603 to 17709864 1261 - unclassified gene predicted gene, 48621
Tssr118494 13 17711160 to 17711165 5 + TSS region transcription start site region 118494
Cdk13 13 17715962 to 17805097 89135 - protein coding gene cyclin-dependent kinase 13
8430406P12Rik 13 17735985 to 17737054 1069 - unclassified gene RIKEN cDNA 8430406P12 gene
Tssr121523 13 17742757 to 17742760 3 - TSS region transcription start site region 121523
Tssr121524 13 17744052 to 17744055 3 - TSS region transcription start site region 121524
Mir466i 13 17747473 to 17747593 120 + miRNA gene microRNA 466i
Tssr121525 13 17752978 to 17752986 8 - TSS region transcription start site region 121525
Gm48624 13 17754516 to 17757325 2809 - unclassified gene predicted gene, 48624
Tssr121526 13 17772693 to 17772744 51 - TSS region transcription start site region 121526
Tssr121527 13 17776493 to 17776496 3 - TSS region transcription start site region 121527
Tssr121528 13 17783605 to 17783610 5 - TSS region transcription start site region 121528
Tssr121529 13 17789251 to 17789273 22 - TSS region transcription start site region 121529
Tssr121530 13 17790615 to 17790627 12 - TSS region transcription start site region 121530
Tssr121531 13 17797376 to 17797381 5 - TSS region transcription start site region 121531
Cpgi5298 13 17803255 to 17805831 2576 CpG island CpG island 5298
Tssr121532 13 17804946 to 17804968 22 - TSS region transcription start site region 121532
Tssr121533 13 17804982 to 17805025 43 - TSS region transcription start site region 121533
Tssr121534 13 17805093 to 17805189 96 - TSS region transcription start site region 121534
Tssr121535 13 17805306 to 17805368 62 - TSS region transcription start site region 121535
Tssr118495 13 17805528 to 17805540 12 + TSS region transcription start site region 118495
Gm24018 13 17809591 to 17809697 106 - snRNA gene predicted gene, 24018
Gm18859 13 17820946 to 17821770 824 + pseudogene predicted gene, 18859
Tssr4002 13 17857242 to 17857262 20 + TSS region transcription start site region 4002
D13Mit238 13 17870596 to 17870705 109 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 238
Rala 13 17880575 to 17944217 63642 - protein coding gene v-ral simian leukemia viral oncogene A (ras related)
Tssr121536 13 17888573 to 17888586 13 - TSS region transcription start site region 121536
Tssr121537 13 17893171 to 17893189 18 - TSS region transcription start site region 121537
Gm18362 13 17894868 to 17895371 503 + pseudogene predicted gene, 18362
Gm48754 13 17932386 to 17938434 6048 + antisense lncRNA gene predicted gene, 48754
Tssr121538 13 17939982 to 17940012 30 - TSS region transcription start site region 121538
Cpgi5299 13 17943460 to 17944716 1256 CpG island CpG island 5299
Tssr121539 13 17944137 to 17944142 5 - TSS region transcription start site region 121539
Tssr121540 13 17944151 to 17944239 88 - TSS region transcription start site region 121540
Tssr118496 13 17944259 to 17944299 40 + TSS region transcription start site region 118496
Gm32699 13 17944291 to 17946278 1987 + protein coding gene predicted gene, 32699
Gm5628 13 17949908 to 17950956 1048 + pseudogene predicted gene 5628
A930027P06Rik 13 17951938 to 17954912 2974 + unclassified gene RIKEN cDNA A930027P06 gene
Gm48776 13 17960852 to 17961416 564 - pseudogene predicted gene, 48776
Gm48778 13 17961150 to 17992533 31383 - unclassified non-coding RNA gene predicted gene, 48778
Tssr118497 13 17967336 to 17967343 7 + TSS region transcription start site region 118497
Yae1d1 13 17986640 to 17993351 6711 - protein coding gene Yae1 domain containing 1
Cpgi5300 13 17992799 to 17993599 800 CpG island CpG island 5300
Tssr121541 13 17993306 to 17993362 56 - TSS region transcription start site region 121541
Gm48799 13 18002310 to 18008344 6034 - lincRNA gene predicted gene, 48799
Vdac3-ps1 13 18030741 to 18031593 852 - pseudogene voltage-dependent anion channel 3, pseudogene 1
Tssr121542 13 18031616 to 18031626 10 - TSS region transcription start site region 121542
Gm6575 13 18038561 to 18039257 696 + pseudogene predicted gene 6575
4930448F12Rik 13 18084947 to 18100202 15255 - lincRNA gene RIKEN cDNA 4930448F12 gene
Gm48800 13 18094472 to 18095954 1482 - pseudogene predicted gene, 48800
Tssr118498 13 18101821 to 18101828 7 + TSS region transcription start site region 118498
Pou6f2 13 18124960 to 18382044 257084 - protein coding gene POU domain, class 6, transcription factor 2
Cpgi5301 13 18211392 to 18211547 155 CpG island CpG island 5301
Gm31832 13 18281144 to 18284357 3213 + lncRNA gene predicted gene, 31832
Mcsq4 13 18322000 to 39773000 21451000 QTL methacholine sensitivity QTL 4, final
Gm46402 13 18340269 to 18346639 6370 - lncRNA gene predicted gene, 46402
Tssr121543 13 18378455 to 18378458 3 - TSS region transcription start site region 121543
Tssr121544 13 18397801 to 18397832 31 - TSS region transcription start site region 121544
Gm48829 13 18640257 to 18645349 5092 - lincRNA gene predicted gene, 48829
Tssr118499 13 18717289 to 18717316 27 + TSS region transcription start site region 118499
Vps41 13 18717292 to 18866811 149519 + protein coding gene VPS41 HOPS complex subunit
Cpgi5302 13 18717293 to 18717524 231 CpG island CpG island 5302
Tssr118500 13 18717680 to 18717687 7 + TSS region transcription start site region 118500
Tssr4003 13 18745098 to 18745112 14 + TSS region transcription start site region 4003
Tssr118501 13 18781417 to 18781435 18 + TSS region transcription start site region 118501
Tssr118502 13 18842141 to 18842163 22 + TSS region transcription start site region 118502
Gm26172 13 18922577 to 18922710 133 + snoRNA gene predicted gene, 26172
Cpgi5303 13 18947982 to 18949060 1078 CpG island CpG island 5303
Amph 13 18948205 to 19150921 202716 + protein coding gene amphiphysin
Tssr118503 13 18948344 to 18948417 73 + TSS region transcription start site region 118503
Tssr118504 13 18957932 to 18957942 10 + TSS region transcription start site region 118504
Gm47658 13 18971702 to 18974997 3295 - antisense lncRNA gene predicted gene, 47658
Gm47659 13 18973460 to 18974141 681 + pseudogene predicted gene, 47659
Gm18065 13 18983930 to 18984455 525 + pseudogene predicted gene, 18065
Gm47661 13 19029940 to 19057896 27956 - antisense lncRNA gene predicted gene, 47661
Gm47660 13 19071197 to 19071575 378 - pseudogene predicted gene, 47660
Gm31887 13 19162036 to 19193558 31522 - antisense lncRNA gene predicted gene, 31887
Tssr118505 13 19177905 to 19177930 25 + TSS region transcription start site region 118505
Tcrg-V7 13 19178042 to 19178492 450 + gene segment T cell receptor gamma, variable 7
Tcrg 13 19178042 to 19356476 178434 + complex/cluster/region T cell receptor gamma chain
Tssr121545 13 19182356 to 19182369 13 - TSS region transcription start site region 121545
Tssr118506 13 19184927 to 19184981 54 + TSS region transcription start site region 118506
Tcrg-V4 13 19184981 to 19185506 525 + gene segment T cell receptor gamma, variable 4
Tssr118507 13 19184986 to 19184998 12 + TSS region transcription start site region 118507
Tssr118508 13 19185005 to 19185022 17 + TSS region transcription start site region 118508
Tssr118509 13 19185037 to 19185048 11 + TSS region transcription start site region 118509
Tssr118510 13 19185095 to 19185106 11 + TSS region transcription start site region 118510
Tssr121546 13 19185506 to 19185518 12 - TSS region transcription start site region 121546
Tssr121547 13 19188609 to 19188615 6 - TSS region transcription start site region 121547
Tssr118511 13 19190333 to 19190349 16 + TSS region transcription start site region 118511
Tcrg-V6 13 19190368 to 19190929 561 + gene segment T cell receptor gamma, variable 6
Tssr118512 13 19190701 to 19190714 13 + TSS region transcription start site region 118512
Tssr118513 13 19190717 to 19190731 14 + TSS region transcription start site region 118513
Tssr118514 13 19190860 to 19190877 17 + TSS region transcription start site region 118514
Tssr118515 13 19192190 to 19192197 7 + TSS region transcription start site region 118515
Tssr118516 13 19192216 to 19192219 3 + TSS region transcription start site region 118516
Tssr118517 13 19192235 to 19192251 16 + TSS region transcription start site region 118517
Tssr118518 13 19192256 to 19192263 7 + TSS region transcription start site region 118518
Tcrg-V5 13 19192278 to 19192725 447 + gene segment T cell receptor gamma, variable 5
Tssr118519 13 19192519 to 19192529 10 + TSS region transcription start site region 118519
Tssr118520 13 19192664 to 19192674 10 + TSS region transcription start site region 118520
Tssr118521 13 19192680 to 19192687 7 + TSS region transcription start site region 118521
Tssr121548 13 19192703 to 19192708 5 - TSS region transcription start site region 121548
Tssr121549 13 19192737 to 19192749 12 - TSS region transcription start site region 121549
Tssr121550 13 19192759 to 19192771 12 - TSS region transcription start site region 121550
Tssr121551 13 19192791 to 19192803 12 - TSS region transcription start site region 121551
Tssr121552 13 19192846 to 19192849 3 - TSS region transcription start site region 121552
Tssr118522 13 19192904 to 19192945 41 + TSS region transcription start site region 118522
Tssr121553 13 19193495 to 19193514 19 - TSS region transcription start site region 121553
Tssr121554 13 19193553 to 19193570 17 - TSS region transcription start site region 121554
Tssr121555 13 19193585 to 19193598 13 - TSS region transcription start site region 121555
Tssr121556 13 19193601 to 19193608 7 - TSS region transcription start site region 121556
Tssr121557 13 19193613 to 19193622 9 - TSS region transcription start site region 121557
Tssr121558 13 19193678 to 19193682 4 - TSS region transcription start site region 121558
Tssr118523 13 19194062 to 19194108 46 + TSS region transcription start site region 118523
Tssr118524 13 19208819 to 19208839 20 + TSS region transcription start site region 118524