Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:16259052-19229055

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165 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr121520 13 16261325 to 16261348 23 - TSS region transcription start site region 121520
Gm48491 13 16273191 to 16277838 4647 - lincRNA gene predicted gene, 48491
Gm48492 13 16368944 to 16373180 4236 - lincRNA gene predicted gene, 48492
Gm48493 13 16385919 to 16389759 3840 - pseudogene predicted gene, 48493
Gm48494 13 16390591 to 16390854 263 + pseudogene predicted gene, 48494
Gm48496 13 16431525 to 16431780 255 - pseudogene predicted gene, 48496
D13Mit207 13 16434362 to 16434497 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 207
Gm48497 13 16533539 to 16533821 282 - pseudogene predicted gene, 48497
D13Mit162 13 16565875 to 16565977 102 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 162
Gm7537 13 16638077 to 16639490 1413 - pseudogene predicted gene 7537
Tssr118484 13 16756178 to 16756182 4 + TSS region transcription start site region 118484
D13Mit305 13 16779372 to 16779487 115 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 305
Sugct 13 16857472 to 17694795 837323 - protein coding gene succinyl-CoA glutarate-CoA transferase
Gm26098 13 16859185 to 16859472 287 - unclassified non-coding RNA gene predicted gene, 26098
Tssr4001 13 16910931 to 16910932 1 + TSS region transcription start site region 4001
Gm48503 13 16937609 to 16947045 9436 + antisense lncRNA gene predicted gene, 48503
Gm48499 13 16943846 to 16945569 1723 + pseudogene predicted gene, 48499
Igmsc1 13 16993960 to 44765084 27771124 QTL immunoglobulin M secreting cells 1
Cd4ts6 13 16993960 to 16994099 139 QTL CD4 T cell subset 6
D13Mit57 13 16993960 to 16994099 139 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 57
D13Mit174 13 17014923 to 17015046 123 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 174
Pbd2 13 17014923 to 38763430 21748507 QTL peak bone density 2
Eosn2 13 17046726 to 17046726 0 QTL eosinophil differential 2
Gm27043 13 17050921 to 17051878 957 + pseudogene predicted gene, 27043
Gm25020 13 17206021 to 17206127 106 + snRNA gene predicted gene, 25020
Tssr121521 13 17215511 to 17215550 39 - TSS region transcription start site region 121521
Gm48502 13 17258771 to 17261641 2870 + unclassified gene predicted gene, 48502
Tssr118485 13 17310878 to 17310882 4 + TSS region transcription start site region 118485
Gm17890 13 17337599 to 17338355 756 + pseudogene predicted gene, 17890
Gm48501 13 17360294 to 17364134 3840 + pseudogene predicted gene, 48501
Gm24873 13 17440790 to 17440896 106 + snRNA gene predicted gene, 24873
D13Mit303 13 17510067 to 17510189 122 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 303
Gm40826 13 17682710 to 17685778 3068 - lncRNA gene predicted gene, 40826
Cpgi5297 13 17694536 to 17695912 1376 CpG island CpG island 5297
Tssr118486 13 17694621 to 17694630 9 + TSS region transcription start site region 118486
Tssr121522 13 17694729 to 17694786 57 - TSS region transcription start site region 121522
Tssr118487 13 17694914 to 17694929 15 + TSS region transcription start site region 118487
Tssr118488 13 17695029 to 17695040 11 + TSS region transcription start site region 118488
Tssr118489 13 17695143 to 17695213 70 + TSS region transcription start site region 118489
Tssr118490 13 17695259 to 17695270 11 + TSS region transcription start site region 118490
Tssr118491 13 17695409 to 17695436 27 + TSS region transcription start site region 118491
Mplkip 13 17695413 to 17699105 3692 + protein coding gene M-phase specific PLK1 intereacting protein
Tssr118492 13 17695438 to 17695454 16 + TSS region transcription start site region 118492
Tssr118493 13 17700346 to 17700350 4 + TSS region transcription start site region 118493
Gm48621 13 17708603 to 17709864 1261 - unclassified gene predicted gene, 48621
Tssr118494 13 17711160 to 17711165 5 + TSS region transcription start site region 118494
Cdk13 13 17715962 to 17805097 89135 - protein coding gene cyclin-dependent kinase 13
8430406P12Rik 13 17735985 to 17737054 1069 - unclassified gene RIKEN cDNA 8430406P12 gene
Tssr121523 13 17742757 to 17742760 3 - TSS region transcription start site region 121523
Tssr121524 13 17744052 to 17744055 3 - TSS region transcription start site region 121524
Mir466i 13 17747473 to 17747593 120 + miRNA gene microRNA 466i
Tssr121525 13 17752978 to 17752986 8 - TSS region transcription start site region 121525
Gm48624 13 17754516 to 17757325 2809 - unclassified gene predicted gene, 48624
Tssr121526 13 17772693 to 17772744 51 - TSS region transcription start site region 121526
Tssr121527 13 17776493 to 17776496 3 - TSS region transcription start site region 121527
Tssr121528 13 17783605 to 17783610 5 - TSS region transcription start site region 121528
Tssr121529 13 17789251 to 17789273 22 - TSS region transcription start site region 121529
Tssr121530 13 17790615 to 17790627 12 - TSS region transcription start site region 121530
Tssr121531 13 17797376 to 17797381 5 - TSS region transcription start site region 121531
Cpgi5298 13 17803255 to 17805831 2576 CpG island CpG island 5298
Tssr121532 13 17804946 to 17804968 22 - TSS region transcription start site region 121532
Tssr121533 13 17804982 to 17805025 43 - TSS region transcription start site region 121533
Tssr121534 13 17805093 to 17805189 96 - TSS region transcription start site region 121534
Tssr121535 13 17805306 to 17805368 62 - TSS region transcription start site region 121535
Tssr118495 13 17805528 to 17805540 12 + TSS region transcription start site region 118495
Gm24018 13 17809591 to 17809697 106 - snRNA gene predicted gene, 24018
Gm18859 13 17820946 to 17821770 824 + pseudogene predicted gene, 18859
Tssr4002 13 17857242 to 17857262 20 + TSS region transcription start site region 4002
D13Mit238 13 17870596 to 17870705 109 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 238
Rala 13 17880575 to 17944217 63642 - protein coding gene v-ral simian leukemia viral oncogene A (ras related)
Tssr121536 13 17888573 to 17888586 13 - TSS region transcription start site region 121536
Tssr121537 13 17893171 to 17893189 18 - TSS region transcription start site region 121537
Gm18362 13 17894868 to 17895371 503 + pseudogene predicted gene, 18362
Gm48754 13 17932386 to 17938434 6048 + antisense lncRNA gene predicted gene, 48754
Tssr121538 13 17939982 to 17940012 30 - TSS region transcription start site region 121538
Cpgi5299 13 17943460 to 17944716 1256 CpG island CpG island 5299
Tssr121539 13 17944137 to 17944142 5 - TSS region transcription start site region 121539
Tssr121540 13 17944151 to 17944239 88 - TSS region transcription start site region 121540
Tssr118496 13 17944259 to 17944299 40 + TSS region transcription start site region 118496
Gm32699 13 17944291 to 17946278 1987 + protein coding gene predicted gene, 32699
Gm5628 13 17949908 to 17950956 1048 + pseudogene predicted gene 5628
A930027P06Rik 13 17951938 to 17954912 2974 + unclassified gene RIKEN cDNA A930027P06 gene
Gm48776 13 17960852 to 17961416 564 - pseudogene predicted gene, 48776
Gm48778 13 17961150 to 17992533 31383 - unclassified non-coding RNA gene predicted gene, 48778
Tssr118497 13 17967336 to 17967343 7 + TSS region transcription start site region 118497
Yae1d1 13 17986640 to 17993351 6711 - protein coding gene Yae1 domain containing 1
Cpgi5300 13 17992799 to 17993599 800 CpG island CpG island 5300
Tssr121541 13 17993306 to 17993362 56 - TSS region transcription start site region 121541
Gm48799 13 18002310 to 18008344 6034 - lincRNA gene predicted gene, 48799
Vdac3-ps1 13 18030741 to 18031593 852 - pseudogene voltage-dependent anion channel 3, pseudogene 1
Tssr121542 13 18031616 to 18031626 10 - TSS region transcription start site region 121542
Gm6575 13 18038561 to 18039257 696 + pseudogene predicted gene 6575
4930448F12Rik 13 18084947 to 18100202 15255 - lincRNA gene RIKEN cDNA 4930448F12 gene
Gm48800 13 18094472 to 18095954 1482 - pseudogene predicted gene, 48800
Tssr118498 13 18101821 to 18101828 7 + TSS region transcription start site region 118498
Pou6f2 13 18124960 to 18382044 257084 - protein coding gene POU domain, class 6, transcription factor 2
Cpgi5301 13 18211392 to 18211547 155 CpG island CpG island 5301
Gm31832 13 18281144 to 18284357 3213 + lncRNA gene predicted gene, 31832
Mcsq4 13 18322000 to 39773000 21451000 QTL methacholine sensitivity QTL 4, final
Gm46402 13 18340269 to 18346639 6370 - lncRNA gene predicted gene, 46402
Tssr121543 13 18378455 to 18378458 3 - TSS region transcription start site region 121543
Tssr121544 13 18397801 to 18397832 31 - TSS region transcription start site region 121544
Gm48829 13 18640257 to 18645349 5092 - lincRNA gene predicted gene, 48829
Tssr118499 13 18717289 to 18717316 27 + TSS region transcription start site region 118499
Vps41 13 18717292 to 18866811 149519 + protein coding gene VPS41 HOPS complex subunit
Cpgi5302 13 18717293 to 18717524 231 CpG island CpG island 5302
Tssr118500 13 18717680 to 18717687 7 + TSS region transcription start site region 118500
Tssr4003 13 18745098 to 18745112 14 + TSS region transcription start site region 4003
Tssr118501 13 18781417 to 18781435 18 + TSS region transcription start site region 118501
Tssr118502 13 18842141 to 18842163 22 + TSS region transcription start site region 118502
Gm26172 13 18922577 to 18922710 133 + snoRNA gene predicted gene, 26172
Cpgi5303 13 18947982 to 18949060 1078 CpG island CpG island 5303
Amph 13 18948205 to 19150921 202716 + protein coding gene amphiphysin
Tssr118503 13 18948344 to 18948417 73 + TSS region transcription start site region 118503
Tssr118504 13 18957932 to 18957942 10 + TSS region transcription start site region 118504
Gm47658 13 18971702 to 18974997 3295 - antisense lncRNA gene predicted gene, 47658
Gm47659 13 18973460 to 18974141 681 + pseudogene predicted gene, 47659
Gm18065 13 18983930 to 18984455 525 + pseudogene predicted gene, 18065
Gm47661 13 19029940 to 19057896 27956 - antisense lncRNA gene predicted gene, 47661
Gm47660 13 19071197 to 19071575 378 - pseudogene predicted gene, 47660
Gm31887 13 19162036 to 19193558 31522 - antisense lncRNA gene predicted gene, 31887
Tssr118505 13 19177905 to 19177930 25 + TSS region transcription start site region 118505
Tcrg 13 19178042 to 19356476 178434 + complex/cluster/region T cell receptor gamma chain
Tcrg-V7 13 19178042 to 19178492 450 + gene segment T cell receptor gamma, variable 7
Tssr121545 13 19182356 to 19182369 13 - TSS region transcription start site region 121545
Tssr118506 13 19184927 to 19184981 54 + TSS region transcription start site region 118506
Tcrg-V4 13 19184981 to 19185506 525 + gene segment T cell receptor gamma, variable 4
Tssr118507 13 19184986 to 19184998 12 + TSS region transcription start site region 118507
Tssr118508 13 19185005 to 19185022 17 + TSS region transcription start site region 118508
Tssr118509 13 19185037 to 19185048 11 + TSS region transcription start site region 118509
Tssr118510 13 19185095 to 19185106 11 + TSS region transcription start site region 118510
Tssr121546 13 19185506 to 19185518 12 - TSS region transcription start site region 121546
Tssr121547 13 19188609 to 19188615 6 - TSS region transcription start site region 121547
Tssr118511 13 19190333 to 19190349 16 + TSS region transcription start site region 118511
Tcrg-V6 13 19190368 to 19190929 561 + gene segment T cell receptor gamma, variable 6
Tssr118512 13 19190701 to 19190714 13 + TSS region transcription start site region 118512
Tssr118513 13 19190717 to 19190731 14 + TSS region transcription start site region 118513
Tssr118514 13 19190860 to 19190877 17 + TSS region transcription start site region 118514
Tssr118515 13 19192190 to 19192197 7 + TSS region transcription start site region 118515
Tssr118516 13 19192216 to 19192219 3 + TSS region transcription start site region 118516
Tssr118517 13 19192235 to 19192251 16 + TSS region transcription start site region 118517
Tssr118518 13 19192256 to 19192263 7 + TSS region transcription start site region 118518
Tcrg-V5 13 19192278 to 19192725 447 + gene segment T cell receptor gamma, variable 5
Tssr118519 13 19192519 to 19192529 10 + TSS region transcription start site region 118519
Tssr118520 13 19192664 to 19192674 10 + TSS region transcription start site region 118520
Tssr118521 13 19192680 to 19192687 7 + TSS region transcription start site region 118521
Tssr121548 13 19192703 to 19192708 5 - TSS region transcription start site region 121548
Tssr121549 13 19192737 to 19192749 12 - TSS region transcription start site region 121549
Tssr121550 13 19192759 to 19192771 12 - TSS region transcription start site region 121550
Tssr121551 13 19192791 to 19192803 12 - TSS region transcription start site region 121551
Tssr121552 13 19192846 to 19192849 3 - TSS region transcription start site region 121552
Tssr118522 13 19192904 to 19192945 41 + TSS region transcription start site region 118522
Tssr121553 13 19193495 to 19193514 19 - TSS region transcription start site region 121553
Tssr121554 13 19193553 to 19193570 17 - TSS region transcription start site region 121554
Tssr121555 13 19193585 to 19193598 13 - TSS region transcription start site region 121555
Tssr121556 13 19193601 to 19193608 7 - TSS region transcription start site region 121556
Tssr121557 13 19193613 to 19193622 9 - TSS region transcription start site region 121557
Tssr121558 13 19193678 to 19193682 4 - TSS region transcription start site region 121558
Tssr118523 13 19194062 to 19194108 46 + TSS region transcription start site region 118523
Tssr118524 13 19208819 to 19208839 20 + TSS region transcription start site region 118524
Tssr118525 13 19210314 to 19210330 16 + TSS region transcription start site region 118525
Trgj1 13 19210343 to 19210402 59 + gene segment T cell receptor gamma joining 1
Tssr118526 13 19213651 to 19213673 22 + TSS region transcription start site region 118526
Tcrg-C1 13 19214103 to 19216618 2515 + gene segment T cell receptor gamma, constant 1
Tssr118527 13 19214280 to 19214283 3 + TSS region transcription start site region 118527