Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:16033846-17855569

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm22628 13 16041046 to 16041152 106 - snRNA gene predicted gene, 22628
Gm6562 13 16045641 to 16046104 463 + pseudogene predicted gene 6562
Gm31711 13 16213569 to 16213764 195 - lncRNA gene predicted gene, 31711
Tssr121520 13 16261325 to 16261348 23 - TSS region transcription start site region 121520
Gm48491 13 16273191 to 16277838 4647 - lincRNA gene predicted gene, 48491
Gm48492 13 16368944 to 16373180 4236 - lincRNA gene predicted gene, 48492
Gm48493 13 16385919 to 16389759 3840 - pseudogene predicted gene, 48493
Gm48494 13 16390591 to 16390854 263 + pseudogene predicted gene, 48494
Gm48496 13 16431525 to 16431780 255 - pseudogene predicted gene, 48496
D13Mit207 13 16434362 to 16434497 135 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 207
Gm48497 13 16533539 to 16533821 282 - pseudogene predicted gene, 48497
D13Mit162 13 16565875 to 16565977 102 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 162
Gm7537 13 16638077 to 16639490 1413 - pseudogene predicted gene 7537
Tssr118484 13 16756178 to 16756182 4 + TSS region transcription start site region 118484
D13Mit305 13 16779372 to 16779487 115 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 305
Sugct 13 16857472 to 17694795 837323 - protein coding gene succinyl-CoA glutarate-CoA transferase
Gm26098 13 16859185 to 16859472 287 - unclassified non-coding RNA gene predicted gene, 26098
Tssr4001 13 16910931 to 16910932 1 + TSS region transcription start site region 4001
Gm48503 13 16937609 to 16947045 9436 + antisense lncRNA gene predicted gene, 48503
Gm48499 13 16943846 to 16945569 1723 + pseudogene predicted gene, 48499
Igmsc1 13 16993960 to 44765084 27771124 QTL immunoglobulin M secreting cells 1
Cd4ts6 13 16993960 to 16994099 139 QTL CD4 T cell subset 6
D13Mit57 13 16993960 to 16994099 139 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 57
D13Mit174 13 17014923 to 17015046 123 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 174
Pbd2 13 17014923 to 38763430 21748507 QTL peak bone density 2
Eosn2 13 17046726 to 17046726 0 QTL eosinophil differential 2
Gm27043 13 17050921 to 17051878 957 + pseudogene predicted gene, 27043
Gm25020 13 17206021 to 17206127 106 + snRNA gene predicted gene, 25020
Tssr121521 13 17215511 to 17215550 39 - TSS region transcription start site region 121521
Gm48502 13 17258771 to 17261641 2870 + unclassified gene predicted gene, 48502
Tssr118485 13 17310878 to 17310882 4 + TSS region transcription start site region 118485
Gm17890 13 17337599 to 17338355 756 + pseudogene predicted gene, 17890
Gm48501 13 17360294 to 17364134 3840 + pseudogene predicted gene, 48501
Gm24873 13 17440790 to 17440896 106 + snRNA gene predicted gene, 24873
D13Mit303 13 17510067 to 17510189 122 DNA segment DNA Segment, Chr 13 Massachusetts Institute of Technology 303
Gm40826 13 17682710 to 17685778 3068 - lncRNA gene predicted gene, 40826
Cpgi5297 13 17694536 to 17695912 1376 CpG island CpG island 5297
Tssr118486 13 17694621 to 17694630 9 + TSS region transcription start site region 118486
Tssr121522 13 17694729 to 17694786 57 - TSS region transcription start site region 121522
Tssr118487 13 17694914 to 17694929 15 + TSS region transcription start site region 118487
Tssr118488 13 17695029 to 17695040 11 + TSS region transcription start site region 118488
Tssr118489 13 17695143 to 17695213 70 + TSS region transcription start site region 118489
Tssr118490 13 17695259 to 17695270 11 + TSS region transcription start site region 118490
Tssr118491 13 17695409 to 17695436 27 + TSS region transcription start site region 118491
Mplkip 13 17695413 to 17699105 3692 + protein coding gene M-phase specific PLK1 intereacting protein
Tssr118492 13 17695438 to 17695454 16 + TSS region transcription start site region 118492
Tssr118493 13 17700346 to 17700350 4 + TSS region transcription start site region 118493
Gm48621 13 17708603 to 17709864 1261 - unclassified gene predicted gene, 48621
Tssr118494 13 17711160 to 17711165 5 + TSS region transcription start site region 118494
Cdk13 13 17715962 to 17805097 89135 - protein coding gene cyclin-dependent kinase 13
8430406P12Rik 13 17735985 to 17737054 1069 - unclassified gene RIKEN cDNA 8430406P12 gene
Tssr121523 13 17742757 to 17742760 3 - TSS region transcription start site region 121523
Tssr121524 13 17744052 to 17744055 3 - TSS region transcription start site region 121524
Mir466i 13 17747473 to 17747593 120 + miRNA gene microRNA 466i
Tssr121525 13 17752978 to 17752986 8 - TSS region transcription start site region 121525
Gm48624 13 17754516 to 17757325 2809 - unclassified gene predicted gene, 48624
Tssr121526 13 17772693 to 17772744 51 - TSS region transcription start site region 121526
Tssr121527 13 17776493 to 17776496 3 - TSS region transcription start site region 121527
Tssr121528 13 17783605 to 17783610 5 - TSS region transcription start site region 121528
Tssr121529 13 17789251 to 17789273 22 - TSS region transcription start site region 121529
Tssr121530 13 17790615 to 17790627 12 - TSS region transcription start site region 121530
Tssr121531 13 17797376 to 17797381 5 - TSS region transcription start site region 121531
Cpgi5298 13 17803255 to 17805831 2576 CpG island CpG island 5298
Tssr121532 13 17804946 to 17804968 22 - TSS region transcription start site region 121532
Tssr121533 13 17804982 to 17805025 43 - TSS region transcription start site region 121533
Tssr121534 13 17805093 to 17805189 96 - TSS region transcription start site region 121534
Tssr121535 13 17805306 to 17805368 62 - TSS region transcription start site region 121535
Tssr118495 13 17805528 to 17805540 12 + TSS region transcription start site region 118495
Gm24018 13 17809591 to 17809697 106 - snRNA gene predicted gene, 24018
Gm18859 13 17820946 to 17821770 824 + pseudogene predicted gene, 18859