Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:15577627-16027638

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gli3 13 15463723 to 15730026 266303 + protein coding gene GLI-Kruppel family member GLI3
Tssr118415 13 15606371 to 15606378 7 + TSS region transcription start site region 118415
Tssr118416 13 15613837 to 15613850 13 + TSS region transcription start site region 118416
Tssr118417 13 15648093 to 15648097 4 + TSS region transcription start site region 118417
Gm48343 13 15649935 to 15650145 210 + pseudogene predicted gene, 48343
D13Mit264 13 15707091 to 15707215 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 264
Cpgi5294 13 15759124 to 15759600 476 CpG island CpG island 5294
Gm48408 13 15768990 to 15770120 1130 - unclassified gene predicted gene, 48408
Tssr4000 13 15771571 to 15771578 7 + TSS region transcription start site region 4000
Tssr121504 13 15777610 to 15777615 5 - TSS region transcription start site region 121504
4933412O06Rik 13 15781664 to 15802630 20966 - lincRNA gene RIKEN cDNA 4933412O06 gene
Tssr121505 13 15802627 to 15802638 11 - TSS region transcription start site region 121505
Tssr118418 13 15807241 to 15807243 2 + TSS region transcription start site region 118418
A530046M15Rik 13 15807243 to 15827537 20294 + lincRNA gene RIKEN cDNA A530046M15 gene
B230303A05Rik 13 15813548 to 16023423 209875 - pseudogene RIKEN cDNA B230303A05 gene
Gm48907 13 15814712 to 15815429 717 - pseudogene predicted gene, 48907
A530058O07Rik 13 15817316 to 15820679 3363 + unclassified gene RIKEN cDNA A530058O07 gene
D13Mit237 13 15842639 to 15842753 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 237
Tssr118419 13 15848319 to 15848340 21 + TSS region transcription start site region 118419
Tssr118420 13 15850946 to 15850950 4 + TSS region transcription start site region 118420
Tssr118421 13 15851026 to 15851035 9 + TSS region transcription start site region 118421
Tssr118422 13 15852537 to 15852539 2 + TSS region transcription start site region 118422
Tssr121506 13 15853105 to 15853114 9 - TSS region transcription start site region 121506
Tssr121507 13 15853133 to 15853153 20 - TSS region transcription start site region 121507
Tssr121508 13 15902506 to 15902523 17 - TSS region transcription start site region 121508
Tssr121509 13 15908746 to 15908764 18 - TSS region transcription start site region 121509
Tssr121510 13 15908789 to 15908801 12 - TSS region transcription start site region 121510
Tssr121511 13 15908855 to 15908882 27 - TSS region transcription start site region 121511
Tssr121512 13 15914355 to 15914363 8 - TSS region transcription start site region 121512
Tssr121513 13 15914377 to 15914393 16 - TSS region transcription start site region 121513
Tssr118423 13 15922191 to 15922199 8 + TSS region transcription start site region 118423
Tssr118424 13 15930231 to 15930236 5 + TSS region transcription start site region 118424
Tssr118425 13 15931679 to 15931683 4 + TSS region transcription start site region 118425
Gm31450 13 15931682 to 15934681 2999 + lincRNA gene predicted gene, 31450
Gm48928 13 15969864 to 15970410 546 - pseudogene predicted gene, 48928
Tssr121514 13 15980398 to 15980403 5 - TSS region transcription start site region 121514
Tssr118426 13 15994176 to 15994182 6 + TSS region transcription start site region 118426
Tssr118427 13 15994270 to 15994278 8 + TSS region transcription start site region 118427
Tssr121515 13 16003996 to 16004001 5 - TSS region transcription start site region 121515
Cpgi5295 13 16011812 to 16012567 755 CpG island CpG island 5295
Tssr118428 13 16011826 to 16011843 17 + TSS region transcription start site region 118428
Inhba 13 16011851 to 16031621 19770 + protein coding gene inhibin beta-A
Tssr118429 13 16011920 to 16011949 29 + TSS region transcription start site region 118429
Tssr118430 13 16012230 to 16012267 37 + TSS region transcription start site region 118430
Tssr118431 13 16014397 to 16014408 11 + TSS region transcription start site region 118431
Tssr118432 13 16014421 to 16014439 18 + TSS region transcription start site region 118432
Tssr118433 13 16014441 to 16014452 11 + TSS region transcription start site region 118433
Tssr118434 13 16014457 to 16014473 16 + TSS region transcription start site region 118434
Tssr118435 13 16016328 to 16016340 12 + TSS region transcription start site region 118435
Tssr118436 13 16016684 to 16016706 22 + TSS region transcription start site region 118436
Tssr118437 13 16016924 to 16016942 18 + TSS region transcription start site region 118437
Tssr118438 13 16017047 to 16017056 9 + TSS region transcription start site region 118438
Tssr118439 13 16017064 to 16017104 40 + TSS region transcription start site region 118439
Tssr118440 13 16017283 to 16017298 15 + TSS region transcription start site region 118440
Cpgi5296 13 16017324 to 16017797 473 CpG island CpG island 5296
Tssr118441 13 16017373 to 16017413 40 + TSS region transcription start site region 118441
Tssr118442 13 16017619 to 16017633 14 + TSS region transcription start site region 118442
Tssr118443 13 16018100 to 16018117 17 + TSS region transcription start site region 118443
Tssr118444 13 16018167 to 16018178 11 + TSS region transcription start site region 118444
Tssr118445 13 16019919 to 16019935 16 + TSS region transcription start site region 118445
Tssr118446 13 16021673 to 16021693 20 + TSS region transcription start site region 118446
Tssr121516 13 16023401 to 16023437 36 - TSS region transcription start site region 121516
Gm48444 13 16025382 to 16032275 6893 - antisense lncRNA gene predicted gene, 48444
Tssr118447 13 16026419 to 16026424 5 + TSS region transcription start site region 118447
Tssr118448 13 16026447 to 16026458 11 + TSS region transcription start site region 118448
Tssr118449 13 16026532 to 16026543 11 + TSS region transcription start site region 118449
Tssr121517 13 16026627 to 16026673 46 - TSS region transcription start site region 121517
Tssr118450 13 16026776 to 16026783 7 + TSS region transcription start site region 118450
Tssr118451 13 16026838 to 16026849 11 + TSS region transcription start site region 118451
Tssr118452 13 16026900 to 16026911 11 + TSS region transcription start site region 118452
Tssr118453 13 16026934 to 16026945 11 + TSS region transcription start site region 118453
Tssr118454 13 16026979 to 16027002 23 + TSS region transcription start site region 118454
Tssr118455 13 16027030 to 16027045 15 + TSS region transcription start site region 118455
Tssr118456 13 16027064 to 16027076 12 + TSS region transcription start site region 118456
Tssr118457 13 16027083 to 16027095 12 + TSS region transcription start site region 118457
Tssr118458 13 16027104 to 16027131 27 + TSS region transcription start site region 118458
Tssr118459 13 16027142 to 16027163 21 + TSS region transcription start site region 118459
Tssr121518 13 16027178 to 16027194 16 - TSS region transcription start site region 121518
Tssr118460 13 16027197 to 16027222 25 + TSS region transcription start site region 118460
Tssr121519 13 16027322 to 16027341 19 - TSS region transcription start site region 121519
Tssr118461 13 16027326 to 16027369 43 + TSS region transcription start site region 118461
Tssr118462 13 16027399 to 16027414 15 + TSS region transcription start site region 118462
Tssr118463 13 16027417 to 16027443 26 + TSS region transcription start site region 118463
Tssr118464 13 16027471 to 16027485 14 + TSS region transcription start site region 118464
Tssr118465 13 16027498 to 16027509 11 + TSS region transcription start site region 118465
Tssr118466 13 16027546 to 16027561 15 + TSS region transcription start site region 118466
Tssr118467 13 16027581 to 16027592 11 + TSS region transcription start site region 118467
Tssr118468 13 16027594 to 16027610 16 + TSS region transcription start site region 118468
Tssr118469 13 16027620 to 16027642 22 + TSS region transcription start site region 118469