Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:15100917-16000922

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr3999 13 15103778 to 15103782 4 + TSS region transcription start site region 3999
Gm48338 13 15118386 to 15118631 245 - pseudogene predicted gene, 48338
Gm9512 13 15118632 to 15119128 496 + pseudogene predicted gene 9512
Gm20043 13 15375624 to 15413100 37476 + lincRNA gene predicted gene, 20043
Gm6556 13 15459980 to 15464657 4677 - unclassified non-coding RNA gene predicted gene 6556
Gm26645 13 15459980 to 15461295 1315 - lincRNA gene predicted gene, 26645
Cpgi5293 13 15462709 to 15464669 1960 CpG island CpG island 5293
Tssr118405 13 15463202 to 15463240 38 + TSS region transcription start site region 118405
Tssr118406 13 15463246 to 15463303 57 + TSS region transcription start site region 118406
Tssr118407 13 15463595 to 15463607 12 + TSS region transcription start site region 118407
Tssr118408 13 15463663 to 15463711 48 + TSS region transcription start site region 118408
Tssr118409 13 15463722 to 15463741 19 + TSS region transcription start site region 118409
Gli3 13 15463723 to 15730026 266303 + protein coding gene GLI-Kruppel family member GLI3
Tssr118410 13 15463837 to 15463938 101 + TSS region transcription start site region 118410
Tssr118411 13 15485448 to 15485452 4 + TSS region transcription start site region 118411
Tssr118412 13 15506747 to 15506750 3 + TSS region transcription start site region 118412
Tssr118413 13 15534464 to 15534467 3 + TSS region transcription start site region 118413
Tssr118414 13 15550917 to 15550922 5 + TSS region transcription start site region 118414
Tssr118415 13 15606371 to 15606378 7 + TSS region transcription start site region 118415
Tssr118416 13 15613837 to 15613850 13 + TSS region transcription start site region 118416
Tssr118417 13 15648093 to 15648097 4 + TSS region transcription start site region 118417
Gm48343 13 15649935 to 15650145 210 + pseudogene predicted gene, 48343
D13Mit264 13 15707091 to 15707215 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 264
Cpgi5294 13 15759124 to 15759600 476 CpG island CpG island 5294
Gm48408 13 15768990 to 15770120 1130 - unclassified gene predicted gene, 48408
Tssr4000 13 15771571 to 15771578 7 + TSS region transcription start site region 4000
Tssr121504 13 15777610 to 15777615 5 - TSS region transcription start site region 121504
4933412O06Rik 13 15781664 to 15802630 20966 - lincRNA gene RIKEN cDNA 4933412O06 gene
Tssr121505 13 15802627 to 15802638 11 - TSS region transcription start site region 121505
Tssr118418 13 15807241 to 15807243 2 + TSS region transcription start site region 118418
A530046M15Rik 13 15807243 to 15827537 20294 + lincRNA gene RIKEN cDNA A530046M15 gene
B230303A05Rik 13 15813548 to 16023423 209875 - pseudogene RIKEN cDNA B230303A05 gene
Gm48907 13 15814712 to 15815429 717 - pseudogene predicted gene, 48907
A530058O07Rik 13 15817316 to 15820679 3363 + unclassified gene RIKEN cDNA A530058O07 gene
D13Mit237 13 15842639 to 15842753 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 237
Tssr118419 13 15848319 to 15848340 21 + TSS region transcription start site region 118419
Tssr118420 13 15850946 to 15850950 4 + TSS region transcription start site region 118420
Tssr118421 13 15851026 to 15851035 9 + TSS region transcription start site region 118421
Tssr118422 13 15852537 to 15852539 2 + TSS region transcription start site region 118422
Tssr121506 13 15853105 to 15853114 9 - TSS region transcription start site region 121506
Tssr121507 13 15853133 to 15853153 20 - TSS region transcription start site region 121507
Tssr121508 13 15902506 to 15902523 17 - TSS region transcription start site region 121508
Tssr121509 13 15908746 to 15908764 18 - TSS region transcription start site region 121509
Tssr121510 13 15908789 to 15908801 12 - TSS region transcription start site region 121510
Tssr121511 13 15908855 to 15908882 27 - TSS region transcription start site region 121511
Tssr121512 13 15914355 to 15914363 8 - TSS region transcription start site region 121512
Tssr121513 13 15914377 to 15914393 16 - TSS region transcription start site region 121513
Tssr118423 13 15922191 to 15922199 8 + TSS region transcription start site region 118423
Tssr118424 13 15930231 to 15930236 5 + TSS region transcription start site region 118424
Tssr118425 13 15931679 to 15931683 4 + TSS region transcription start site region 118425
Gm31450 13 15931682 to 15934681 2999 + lincRNA gene predicted gene, 31450
Gm48928 13 15969864 to 15970410 546 - pseudogene predicted gene, 48928
Tssr121514 13 15980398 to 15980403 5 - TSS region transcription start site region 121514
Tssr118426 13 15994176 to 15994182 6 + TSS region transcription start site region 118426
Tssr118427 13 15994270 to 15994278 8 + TSS region transcription start site region 118427