Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:14179764-15749913

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61 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arid4b 13 14063609 to 14199603 135994 + protein coding gene AT rich interactive domain 4B (RBP1-like)
Tssr118398 13 14186898 to 14186912 14 + TSS region transcription start site region 118398
Gm2492 13 14220545 to 14221938 1393 - pseudogene predicted gene 2492
Hecw1 13 14226438 to 14523228 296790 - protein coding gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
Tssr118399 13 14236937 to 14236944 7 + TSS region transcription start site region 118399
Tssr121494 13 14317988 to 14318016 28 - TSS region transcription start site region 121494
Tssr121495 13 14318954 to 14318986 32 - TSS region transcription start site region 121495
Gm47011 13 14377987 to 14379573 1586 - unclassified gene predicted gene, 47011
Tssr3998 13 14487856 to 14487858 2 + TSS region transcription start site region 3998
Tssr118400 13 14510088 to 14510094 6 + TSS region transcription start site region 118400
Tssr121496 13 14521738 to 14521741 3 - TSS region transcription start site region 121496
Tssr121497 13 14521806 to 14521818 12 - TSS region transcription start site region 121497
Tssr121498 13 14522407 to 14522439 32 - TSS region transcription start site region 121498
Tssr121499 13 14522441 to 14522459 18 - TSS region transcription start site region 121499
Cpgi5290 13 14522452 to 14523144 692 CpG island CpG island 5290
Tssr118401 13 14522496 to 14522505 9 + TSS region transcription start site region 118401
Tssr118402 13 14522511 to 14522519 8 + TSS region transcription start site region 118402
Gm30893 13 14522562 to 14524500 1938 + antisense lncRNA gene predicted gene, 30893
Tssr121500 13 14523026 to 14523037 11 - TSS region transcription start site region 121500
Tssr121501 13 14523096 to 14523165 69 - TSS region transcription start site region 121501
Tssr121502 13 14523178 to 14523202 24 - TSS region transcription start site region 121502
Gm18858 13 14548554 to 14549539 985 + pseudogene predicted gene, 18858
D13Uth3 13 14558946 to 14559121 175 DNA segment DNA segment, Chr 13, University of Utah 3
Gm48096 13 14559118 to 14559309 191 + pseudogene predicted gene, 48096
Gm32526 13 14594870 to 14595687 817 + pseudogene predicted gene, 32526
Mrpl32 13 14610301 to 14613037 2736 - protein coding gene mitochondrial ribosomal protein L32
Cpgi5291 13 14612791 to 14613604 813 CpG island CpG island 5291
Tssr121503 13 14613017 to 14613056 39 - TSS region transcription start site region 121503
Psma2 13 14613242 to 14625673 12431 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 2
Tssr118403 13 14613243 to 14613272 29 + TSS region transcription start site region 118403
Gm25444 13 14628619 to 14628731 112 - snRNA gene predicted gene, 25444
Cpgi5292 13 14630041 to 14630559 518 CpG island CpG island 5292
Tssr118404 13 14630237 to 14630296 59 + TSS region transcription start site region 118404
AW209491 13 14630245 to 14638202 7957 + protein coding gene expressed sequence AW209491
Gm19189 13 14863493 to 14864137 644 + pseudogene predicted gene, 19189
Gm48329 13 14943144 to 14944695 1551 + pseudogene predicted gene, 48329
D13Mit295 13 14964764 to 14964913 149 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-295
Gm31066 13 14996767 to 15019558 22791 - lncRNA gene predicted gene, 31066
Tssr3999 13 15103778 to 15103782 4 + TSS region transcription start site region 3999
Gm48338 13 15118386 to 15118631 245 - pseudogene predicted gene, 48338
Gm9512 13 15118632 to 15119128 496 + pseudogene predicted gene 9512
Gm20043 13 15375624 to 15413100 37476 + lincRNA gene predicted gene, 20043
Gm26645 13 15459980 to 15461295 1315 - lincRNA gene predicted gene, 26645
Gm6556 13 15459980 to 15464657 4677 - unclassified non-coding RNA gene predicted gene 6556
Cpgi5293 13 15462709 to 15464669 1960 CpG island CpG island 5293
Tssr118405 13 15463202 to 15463240 38 + TSS region transcription start site region 118405
Tssr118406 13 15463246 to 15463303 57 + TSS region transcription start site region 118406
Tssr118407 13 15463595 to 15463607 12 + TSS region transcription start site region 118407
Tssr118408 13 15463663 to 15463711 48 + TSS region transcription start site region 118408
Tssr118409 13 15463722 to 15463741 19 + TSS region transcription start site region 118409
Gli3 13 15463723 to 15730026 266303 + protein coding gene GLI-Kruppel family member GLI3
Tssr118410 13 15463837 to 15463938 101 + TSS region transcription start site region 118410
Tssr118411 13 15485448 to 15485452 4 + TSS region transcription start site region 118411
Tssr118412 13 15506747 to 15506750 3 + TSS region transcription start site region 118412
Tssr118413 13 15534464 to 15534467 3 + TSS region transcription start site region 118413
Tssr118414 13 15550917 to 15550922 5 + TSS region transcription start site region 118414
Tssr118415 13 15606371 to 15606378 7 + TSS region transcription start site region 118415
Tssr118416 13 15613837 to 15613850 13 + TSS region transcription start site region 118416
Tssr118417 13 15648093 to 15648097 4 + TSS region transcription start site region 118417
Gm48343 13 15649935 to 15650145 210 + pseudogene predicted gene, 48343
D13Mit264 13 15707091 to 15707215 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 264