Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:14124764-15804913

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Arid4b 13 14063609 to 14199603 135994 + protein coding gene AT rich interactive domain 4B (RBP1-like)
Tssr118393 13 14142971 to 14142997 26 + TSS region transcription start site region 118393
Tssr118394 13 14161284 to 14161298 14 + TSS region transcription start site region 118394
Tssr118395 13 14161306 to 14161327 21 + TSS region transcription start site region 118395
Tssr118396 13 14164276 to 14164302 26 + TSS region transcription start site region 118396
Gm48027 13 14171053 to 14174488 3435 + sense intronic lncRNA gene predicted gene, 48027
Tssr118397 13 14176106 to 14176110 4 + TSS region transcription start site region 118397
Tssr118398 13 14186898 to 14186912 14 + TSS region transcription start site region 118398
Gm2492 13 14220545 to 14221938 1393 - pseudogene predicted gene 2492
Hecw1 13 14226438 to 14523228 296790 - protein coding gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
Tssr118399 13 14236937 to 14236944 7 + TSS region transcription start site region 118399
Tssr121494 13 14317988 to 14318016 28 - TSS region transcription start site region 121494
Tssr121495 13 14318954 to 14318986 32 - TSS region transcription start site region 121495
Gm47011 13 14377987 to 14379573 1586 - unclassified gene predicted gene, 47011
Tssr3998 13 14487856 to 14487858 2 + TSS region transcription start site region 3998
Tssr118400 13 14510088 to 14510094 6 + TSS region transcription start site region 118400
Tssr121496 13 14521738 to 14521741 3 - TSS region transcription start site region 121496
Tssr121497 13 14521806 to 14521818 12 - TSS region transcription start site region 121497
Tssr121498 13 14522407 to 14522439 32 - TSS region transcription start site region 121498
Tssr121499 13 14522441 to 14522459 18 - TSS region transcription start site region 121499
Cpgi5290 13 14522452 to 14523144 692 CpG island CpG island 5290
Tssr118401 13 14522496 to 14522505 9 + TSS region transcription start site region 118401
Tssr118402 13 14522511 to 14522519 8 + TSS region transcription start site region 118402
Gm30893 13 14522562 to 14524500 1938 + antisense lncRNA gene predicted gene, 30893
Tssr121500 13 14523026 to 14523037 11 - TSS region transcription start site region 121500
Tssr121501 13 14523096 to 14523165 69 - TSS region transcription start site region 121501
Tssr121502 13 14523178 to 14523202 24 - TSS region transcription start site region 121502
Gm18858 13 14548554 to 14549539 985 + pseudogene predicted gene, 18858
D13Uth3 13 14558946 to 14559121 175 DNA segment DNA segment, Chr 13, University of Utah 3
Gm48096 13 14559118 to 14559309 191 + pseudogene predicted gene, 48096
Gm32526 13 14594870 to 14595687 817 + pseudogene predicted gene, 32526
Mrpl32 13 14610301 to 14613037 2736 - protein coding gene mitochondrial ribosomal protein L32
Cpgi5291 13 14612791 to 14613604 813 CpG island CpG island 5291
Tssr121503 13 14613017 to 14613056 39 - TSS region transcription start site region 121503
Psma2 13 14613242 to 14625673 12431 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 2
Tssr118403 13 14613243 to 14613272 29 + TSS region transcription start site region 118403
Gm25444 13 14628619 to 14628731 112 - snRNA gene predicted gene, 25444
Cpgi5292 13 14630041 to 14630559 518 CpG island CpG island 5292
Tssr118404 13 14630237 to 14630296 59 + TSS region transcription start site region 118404
AW209491 13 14630245 to 14638202 7957 + protein coding gene expressed sequence AW209491
Gm19189 13 14863493 to 14864137 644 + pseudogene predicted gene, 19189
Gm48329 13 14943144 to 14944695 1551 + pseudogene predicted gene, 48329
D13Mit295 13 14964764 to 14964913 149 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-295
Gm31066 13 14996767 to 15019558 22791 - lncRNA gene predicted gene, 31066
Tssr3999 13 15103778 to 15103782 4 + TSS region transcription start site region 3999
Gm48338 13 15118386 to 15118631 245 - pseudogene predicted gene, 48338
Gm9512 13 15118632 to 15119128 496 + pseudogene predicted gene 9512
Gm20043 13 15375624 to 15413100 37476 + lincRNA gene predicted gene, 20043
Gm6556 13 15459980 to 15464657 4677 - unclassified non-coding RNA gene predicted gene 6556
Gm26645 13 15459980 to 15461295 1315 - lincRNA gene predicted gene, 26645
Cpgi5293 13 15462709 to 15464669 1960 CpG island CpG island 5293
Tssr118405 13 15463202 to 15463240 38 + TSS region transcription start site region 118405
Tssr118406 13 15463246 to 15463303 57 + TSS region transcription start site region 118406
Tssr118407 13 15463595 to 15463607 12 + TSS region transcription start site region 118407
Tssr118408 13 15463663 to 15463711 48 + TSS region transcription start site region 118408
Tssr118409 13 15463722 to 15463741 19 + TSS region transcription start site region 118409
Gli3 13 15463723 to 15730026 266303 + protein coding gene GLI-Kruppel family member GLI3
Tssr118410 13 15463837 to 15463938 101 + TSS region transcription start site region 118410
Tssr118411 13 15485448 to 15485452 4 + TSS region transcription start site region 118411
Tssr118412 13 15506747 to 15506750 3 + TSS region transcription start site region 118412
Tssr118413 13 15534464 to 15534467 3 + TSS region transcription start site region 118413
Tssr118414 13 15550917 to 15550922 5 + TSS region transcription start site region 118414
Tssr118415 13 15606371 to 15606378 7 + TSS region transcription start site region 118415
Tssr118416 13 15613837 to 15613850 13 + TSS region transcription start site region 118416
Tssr118417 13 15648093 to 15648097 4 + TSS region transcription start site region 118417
Gm48343 13 15649935 to 15650145 210 + pseudogene predicted gene, 48343
D13Mit264 13 15707091 to 15707215 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 264
Cpgi5294 13 15759124 to 15759600 476 CpG island CpG island 5294
Gm48408 13 15768990 to 15770120 1130 - unclassified gene predicted gene, 48408
Tssr4000 13 15771571 to 15771578 7 + TSS region transcription start site region 4000
Tssr121504 13 15777610 to 15777615 5 - TSS region transcription start site region 121504
4933412O06Rik 13 15781664 to 15802630 20966 - lincRNA gene RIKEN cDNA 4933412O06 gene
Tssr121505 13 15802627 to 15802638 11 - TSS region transcription start site region 121505