Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:13846438-14903228

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm47882 13 13862534 to 13893979 31445 + lincRNA gene predicted gene, 47882
Tssr121482 13 13862905 to 13862912 7 - TSS region transcription start site region 121482
Gm7446 13 13890760 to 13891999 1239 - pseudogene predicted gene 7446
Gm7046 13 13895807 to 13910408 14601 - pseudogene predicted gene 7046
Gm47884 13 13953219 to 13954338 1119 + bidirectional promoter lncRNA gene predicted gene, 47884
Cpgi5287 13 13953881 to 13955394 1513 CpG island CpG island 5287
Tssr121483 13 13954332 to 13954370 38 - TSS region transcription start site region 121483
B3galnt2 13 13954474 to 13999088 44614 + protein coding gene UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
Tssr118385 13 13954539 to 13954555 16 + TSS region transcription start site region 118385
Tssr118386 13 13954614 to 13954691 77 + TSS region transcription start site region 118386
Tssr118387 13 13954694 to 13954705 11 + TSS region transcription start site region 118387
Gm18856 13 13964475 to 13965860 1385 - pseudogene predicted gene, 18856
Tssr121484 13 13968897 to 13968923 26 - TSS region transcription start site region 121484
Tbce 13 13997949 to 14039638 41689 - protein coding gene tubulin-specific chaperone E
Tssr121485 13 14026714 to 14026726 12 - TSS region transcription start site region 121485
D13Uth5 13 14027132 to 14027348 216 DNA segment DNA segment, Chr 13, University of Utah 5
D13Uth2 13 14027132 to 14027347 215 DNA segment DNA segment, Chr 13, University of Utah 2
Cpgi5288 13 14039287 to 14039805 518 CpG island CpG island 5288
Tssr121486 13 14039576 to 14039589 13 - TSS region transcription start site region 121486
Tssr121487 13 14039595 to 14039639 44 - TSS region transcription start site region 121487
Gm48017 13 14041392 to 14041599 207 + pseudogene predicted gene, 48017
Ggps1 13 14050659 to 14063488 12829 - protein coding gene geranylgeranyl diphosphate synthase 1
Cpgi5289 13 14062843 to 14065166 2323 CpG island CpG island 5289
Tssr121488 13 14063245 to 14063256 11 - TSS region transcription start site region 121488
Tssr121489 13 14063268 to 14063278 10 - TSS region transcription start site region 121489
Tssr121490 13 14063292 to 14063306 14 - TSS region transcription start site region 121490
Tssr121491 13 14063377 to 14063384 7 - TSS region transcription start site region 121491
Tssr121492 13 14063395 to 14063436 41 - TSS region transcription start site region 121492
Arid4b 13 14063609 to 14199603 135994 + protein coding gene AT rich interactive domain 4B (RBP1-like)
Tssr118388 13 14063776 to 14063822 46 + TSS region transcription start site region 118388
Tssr121493 13 14064700 to 14064710 10 - TSS region transcription start site region 121493
Tssr118389 13 14065985 to 14065996 11 + TSS region transcription start site region 118389
D230040A04Rik 13 14065986 to 14069059 3073 unclassified gene RIKEN cDNA D230040A04 gene
Gm26129 13 14087439 to 14087545 106 + snRNA gene predicted gene, 26129
Tssr118390 13 14090956 to 14090976 20 + TSS region transcription start site region 118390
Tssr118391 13 14091010 to 14091016 6 + TSS region transcription start site region 118391
Tssr118392 13 14097456 to 14097467 11 + TSS region transcription start site region 118392
n-R5s52 13 14118743 to 14118855 112 - rRNA gene nuclear encoded rRNA 5S 52
Tssr118393 13 14142971 to 14142997 26 + TSS region transcription start site region 118393
Tssr118394 13 14161284 to 14161298 14 + TSS region transcription start site region 118394
Tssr118395 13 14161306 to 14161327 21 + TSS region transcription start site region 118395
Tssr118396 13 14164276 to 14164302 26 + TSS region transcription start site region 118396
Gm48027 13 14171053 to 14174488 3435 + sense intronic lncRNA gene predicted gene, 48027
Tssr118397 13 14176106 to 14176110 4 + TSS region transcription start site region 118397
Tssr118398 13 14186898 to 14186912 14 + TSS region transcription start site region 118398
Gm2492 13 14220545 to 14221938 1393 - pseudogene predicted gene 2492
Hecw1 13 14226438 to 14523228 296790 - protein coding gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
Tssr118399 13 14236937 to 14236944 7 + TSS region transcription start site region 118399
Tssr121494 13 14317988 to 14318016 28 - TSS region transcription start site region 121494
Tssr121495 13 14318954 to 14318986 32 - TSS region transcription start site region 121495
Gm47011 13 14377987 to 14379573 1586 - unclassified gene predicted gene, 47011
Tssr3998 13 14487856 to 14487858 2 + TSS region transcription start site region 3998
Tssr118400 13 14510088 to 14510094 6 + TSS region transcription start site region 118400
Tssr121496 13 14521738 to 14521741 3 - TSS region transcription start site region 121496
Tssr121497 13 14521806 to 14521818 12 - TSS region transcription start site region 121497
Tssr121498 13 14522407 to 14522439 32 - TSS region transcription start site region 121498
Tssr121499 13 14522441 to 14522459 18 - TSS region transcription start site region 121499
Cpgi5290 13 14522452 to 14523144 692 CpG island CpG island 5290
Tssr118401 13 14522496 to 14522505 9 + TSS region transcription start site region 118401
Tssr118402 13 14522511 to 14522519 8 + TSS region transcription start site region 118402
Gm30893 13 14522562 to 14524500 1938 + antisense lncRNA gene predicted gene, 30893
Tssr121500 13 14523026 to 14523037 11 - TSS region transcription start site region 121500
Tssr121501 13 14523096 to 14523165 69 - TSS region transcription start site region 121501
Tssr121502 13 14523178 to 14523202 24 - TSS region transcription start site region 121502
Gm18858 13 14548554 to 14549539 985 + pseudogene predicted gene, 18858
D13Uth3 13 14558946 to 14559121 175 DNA segment DNA segment, Chr 13, University of Utah 3
Gm48096 13 14559118 to 14559309 191 + pseudogene predicted gene, 48096
Gm32526 13 14594870 to 14595687 817 + pseudogene predicted gene, 32526
Mrpl32 13 14610301 to 14613037 2736 - protein coding gene mitochondrial ribosomal protein L32
Cpgi5291 13 14612791 to 14613604 813 CpG island CpG island 5291
Tssr121503 13 14613017 to 14613056 39 - TSS region transcription start site region 121503
Psma2 13 14613242 to 14625673 12431 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 2
Tssr118403 13 14613243 to 14613272 29 + TSS region transcription start site region 118403
Gm25444 13 14628619 to 14628731 112 - snRNA gene predicted gene, 25444
Cpgi5292 13 14630041 to 14630559 518 CpG island CpG island 5292
Tssr118404 13 14630237 to 14630296 59 + TSS region transcription start site region 118404
AW209491 13 14630245 to 14638202 7957 + protein coding gene expressed sequence AW209491
Gm19189 13 14863493 to 14864137 644 + pseudogene predicted gene, 19189