Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:13790088-15230094

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gng4 13 13784059 to 13827895 43836 + protein coding gene guanine nucleotide binding protein (G protein), gamma 4
D13Sfk19 13 13793948 to 13794110 162 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 19
D13Sfk17 13 13825379 to 13825453 74 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 17
Tssr118384 13 13825450 to 13825463 13 + TSS region transcription start site region 118384
Gm7441 13 13842242 to 13844250 2008 + pseudogene predicted gene 7441
Tssr3997 13 13845588 to 13845589 1 + TSS region transcription start site region 3997
Gm47882 13 13862534 to 13893979 31445 + lincRNA gene predicted gene, 47882
Tssr121482 13 13862905 to 13862912 7 - TSS region transcription start site region 121482
Gm7446 13 13890760 to 13891999 1239 - pseudogene predicted gene 7446
Gm7046 13 13895807 to 13910408 14601 - pseudogene predicted gene 7046
Gm47884 13 13953219 to 13954338 1119 + bidirectional promoter lncRNA gene predicted gene, 47884
Cpgi5287 13 13953881 to 13955394 1513 CpG island CpG island 5287
Tssr121483 13 13954332 to 13954370 38 - TSS region transcription start site region 121483
B3galnt2 13 13954474 to 13999088 44614 + protein coding gene UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
Tssr118385 13 13954539 to 13954555 16 + TSS region transcription start site region 118385
Tssr118386 13 13954614 to 13954691 77 + TSS region transcription start site region 118386
Tssr118387 13 13954694 to 13954705 11 + TSS region transcription start site region 118387
Gm18856 13 13964475 to 13965860 1385 - pseudogene predicted gene, 18856
Tssr121484 13 13968897 to 13968923 26 - TSS region transcription start site region 121484
Tbce 13 13997949 to 14039638 41689 - protein coding gene tubulin-specific chaperone E
Tssr121485 13 14026714 to 14026726 12 - TSS region transcription start site region 121485
D13Uth2 13 14027132 to 14027347 215 DNA segment DNA segment, Chr 13, University of Utah 2
D13Uth5 13 14027132 to 14027348 216 DNA segment DNA segment, Chr 13, University of Utah 5
Cpgi5288 13 14039287 to 14039805 518 CpG island CpG island 5288
Tssr121486 13 14039576 to 14039589 13 - TSS region transcription start site region 121486
Tssr121487 13 14039595 to 14039639 44 - TSS region transcription start site region 121487
Gm48017 13 14041392 to 14041599 207 + pseudogene predicted gene, 48017
Ggps1 13 14050659 to 14063488 12829 - protein coding gene geranylgeranyl diphosphate synthase 1
Cpgi5289 13 14062843 to 14065166 2323 CpG island CpG island 5289
Tssr121488 13 14063245 to 14063256 11 - TSS region transcription start site region 121488
Tssr121489 13 14063268 to 14063278 10 - TSS region transcription start site region 121489
Tssr121490 13 14063292 to 14063306 14 - TSS region transcription start site region 121490
Tssr121491 13 14063377 to 14063384 7 - TSS region transcription start site region 121491
Tssr121492 13 14063395 to 14063436 41 - TSS region transcription start site region 121492
Arid4b 13 14063609 to 14199603 135994 + protein coding gene AT rich interactive domain 4B (RBP1-like)
Tssr118388 13 14063776 to 14063822 46 + TSS region transcription start site region 118388
Tssr121493 13 14064700 to 14064710 10 - TSS region transcription start site region 121493
Tssr118389 13 14065985 to 14065996 11 + TSS region transcription start site region 118389
D230040A04Rik 13 14065986 to 14069059 3073 unclassified gene RIKEN cDNA D230040A04 gene
Gm26129 13 14087439 to 14087545 106 + snRNA gene predicted gene, 26129
Tssr118390 13 14090956 to 14090976 20 + TSS region transcription start site region 118390
Tssr118391 13 14091010 to 14091016 6 + TSS region transcription start site region 118391
Tssr118392 13 14097456 to 14097467 11 + TSS region transcription start site region 118392
n-R5s52 13 14118743 to 14118855 112 - rRNA gene nuclear encoded rRNA 5S 52
Tssr118393 13 14142971 to 14142997 26 + TSS region transcription start site region 118393
Tssr118394 13 14161284 to 14161298 14 + TSS region transcription start site region 118394
Tssr118395 13 14161306 to 14161327 21 + TSS region transcription start site region 118395
Tssr118396 13 14164276 to 14164302 26 + TSS region transcription start site region 118396
Gm48027 13 14171053 to 14174488 3435 + sense intronic lncRNA gene predicted gene, 48027
Tssr118397 13 14176106 to 14176110 4 + TSS region transcription start site region 118397
Tssr118398 13 14186898 to 14186912 14 + TSS region transcription start site region 118398
Gm2492 13 14220545 to 14221938 1393 - pseudogene predicted gene 2492
Hecw1 13 14226438 to 14523228 296790 - protein coding gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
Tssr118399 13 14236937 to 14236944 7 + TSS region transcription start site region 118399
Tssr121494 13 14317988 to 14318016 28 - TSS region transcription start site region 121494
Tssr121495 13 14318954 to 14318986 32 - TSS region transcription start site region 121495
Gm47011 13 14377987 to 14379573 1586 - unclassified gene predicted gene, 47011
Tssr3998 13 14487856 to 14487858 2 + TSS region transcription start site region 3998
Tssr118400 13 14510088 to 14510094 6 + TSS region transcription start site region 118400
Tssr121496 13 14521738 to 14521741 3 - TSS region transcription start site region 121496
Tssr121497 13 14521806 to 14521818 12 - TSS region transcription start site region 121497
Tssr121498 13 14522407 to 14522439 32 - TSS region transcription start site region 121498
Tssr121499 13 14522441 to 14522459 18 - TSS region transcription start site region 121499
Cpgi5290 13 14522452 to 14523144 692 CpG island CpG island 5290
Tssr118401 13 14522496 to 14522505 9 + TSS region transcription start site region 118401
Tssr118402 13 14522511 to 14522519 8 + TSS region transcription start site region 118402
Gm30893 13 14522562 to 14524500 1938 + antisense lncRNA gene predicted gene, 30893
Tssr121500 13 14523026 to 14523037 11 - TSS region transcription start site region 121500
Tssr121501 13 14523096 to 14523165 69 - TSS region transcription start site region 121501
Tssr121502 13 14523178 to 14523202 24 - TSS region transcription start site region 121502
Gm18858 13 14548554 to 14549539 985 + pseudogene predicted gene, 18858
D13Uth3 13 14558946 to 14559121 175 DNA segment DNA segment, Chr 13, University of Utah 3
Gm48096 13 14559118 to 14559309 191 + pseudogene predicted gene, 48096
Gm32526 13 14594870 to 14595687 817 + pseudogene predicted gene, 32526
Mrpl32 13 14610301 to 14613037 2736 - protein coding gene mitochondrial ribosomal protein L32
Cpgi5291 13 14612791 to 14613604 813 CpG island CpG island 5291
Tssr121503 13 14613017 to 14613056 39 - TSS region transcription start site region 121503
Psma2 13 14613242 to 14625673 12431 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 2
Tssr118403 13 14613243 to 14613272 29 + TSS region transcription start site region 118403
Gm25444 13 14628619 to 14628731 112 - snRNA gene predicted gene, 25444
Cpgi5292 13 14630041 to 14630559 518 CpG island CpG island 5292
Tssr118404 13 14630237 to 14630296 59 + TSS region transcription start site region 118404
AW209491 13 14630245 to 14638202 7957 + protein coding gene expressed sequence AW209491
Gm19189 13 14863493 to 14864137 644 + pseudogene predicted gene, 19189
Gm48329 13 14943144 to 14944695 1551 + pseudogene predicted gene, 48329
D13Mit295 13 14964764 to 14964913 149 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-295
Gm31066 13 14996767 to 15019558 22791 - lncRNA gene predicted gene, 31066
Tssr3999 13 15103778 to 15103782 4 + TSS region transcription start site region 3999
Gm48338 13 15118386 to 15118631 245 - pseudogene predicted gene, 48338
Gm9512 13 15118632 to 15119128 496 + pseudogene predicted gene 9512