Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:13632322-18422341

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331 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lyst 13 13590397 to 13778803 188406 + protein coding gene lysosomal trafficking regulator
Tssr118370 13 13634939 to 13634964 25 + TSS region transcription start site region 118370
Tssr118371 13 13638279 to 13638296 17 + TSS region transcription start site region 118371
Tssr118372 13 13694452 to 13694463 11 + TSS region transcription start site region 118372
Tssr118373 13 13698702 to 13698714 12 + TSS region transcription start site region 118373
Tssr118374 13 13699196 to 13699211 15 + TSS region transcription start site region 118374
Tssr118375 13 13709946 to 13709965 19 + TSS region transcription start site region 118375
Tssr118376 13 13710219 to 13710238 19 + TSS region transcription start site region 118376
Tssr118377 13 13712716 to 13712735 19 + TSS region transcription start site region 118377
Tssr118378 13 13712772 to 13712787 15 + TSS region transcription start site region 118378
D13Sfk15 13 13726148 to 13726207 59 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 15
Tssr118379 13 13765534 to 13765548 14 + TSS region transcription start site region 118379
Tssr118380 13 13769362 to 13769376 14 + TSS region transcription start site region 118380
Cpgi5286 13 13783787 to 13785653 1866 CpG island CpG island 5286
Tssr118381 13 13784018 to 13784068 50 + TSS region transcription start site region 118381
Gng4 13 13784059 to 13827895 43836 + protein coding gene guanine nucleotide binding protein (G protein), gamma 4
Tssr118382 13 13784278 to 13784365 87 + TSS region transcription start site region 118382
Tssr118383 13 13784370 to 13784414 44 + TSS region transcription start site region 118383
Gm25271 13 13789344 to 13789633 289 + unclassified non-coding RNA gene predicted gene, 25271
D13Sfk19 13 13793948 to 13794110 162 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 19
D13Sfk17 13 13825379 to 13825453 74 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 17
Tssr118384 13 13825450 to 13825463 13 + TSS region transcription start site region 118384
Gm7441 13 13842242 to 13844250 2008 + pseudogene predicted gene 7441
Tssr3997 13 13845588 to 13845589 1 + TSS region transcription start site region 3997
Gm47882 13 13862534 to 13893979 31445 + lincRNA gene predicted gene, 47882
Tssr121482 13 13862905 to 13862912 7 - TSS region transcription start site region 121482
Gm7446 13 13890760 to 13891999 1239 - pseudogene predicted gene 7446
Gm7046 13 13895807 to 13910408 14601 - pseudogene predicted gene 7046
Gm47884 13 13953219 to 13954338 1119 + bidirectional promoter lncRNA gene predicted gene, 47884
Cpgi5287 13 13953881 to 13955394 1513 CpG island CpG island 5287
Tssr121483 13 13954332 to 13954370 38 - TSS region transcription start site region 121483
B3galnt2 13 13954474 to 13999088 44614 + protein coding gene UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
Tssr118385 13 13954539 to 13954555 16 + TSS region transcription start site region 118385
Tssr118386 13 13954614 to 13954691 77 + TSS region transcription start site region 118386
Tssr118387 13 13954694 to 13954705 11 + TSS region transcription start site region 118387
Gm18856 13 13964475 to 13965860 1385 - pseudogene predicted gene, 18856
Tssr121484 13 13968897 to 13968923 26 - TSS region transcription start site region 121484
Tbce 13 13997949 to 14039638 41689 - protein coding gene tubulin-specific chaperone E
Tssr121485 13 14026714 to 14026726 12 - TSS region transcription start site region 121485
D13Uth5 13 14027132 to 14027348 216 DNA segment DNA segment, Chr 13, University of Utah 5
D13Uth2 13 14027132 to 14027347 215 DNA segment DNA segment, Chr 13, University of Utah 2
Cpgi5288 13 14039287 to 14039805 518 CpG island CpG island 5288
Tssr121486 13 14039576 to 14039589 13 - TSS region transcription start site region 121486
Tssr121487 13 14039595 to 14039639 44 - TSS region transcription start site region 121487
Gm48017 13 14041392 to 14041599 207 + pseudogene predicted gene, 48017
Ggps1 13 14050659 to 14063488 12829 - protein coding gene geranylgeranyl diphosphate synthase 1
Cpgi5289 13 14062843 to 14065166 2323 CpG island CpG island 5289
Tssr121488 13 14063245 to 14063256 11 - TSS region transcription start site region 121488
Tssr121489 13 14063268 to 14063278 10 - TSS region transcription start site region 121489
Tssr121490 13 14063292 to 14063306 14 - TSS region transcription start site region 121490
Tssr121491 13 14063377 to 14063384 7 - TSS region transcription start site region 121491
Tssr121492 13 14063395 to 14063436 41 - TSS region transcription start site region 121492
Arid4b 13 14063609 to 14199603 135994 + protein coding gene AT rich interactive domain 4B (RBP1-like)
Tssr118388 13 14063776 to 14063822 46 + TSS region transcription start site region 118388
Tssr121493 13 14064700 to 14064710 10 - TSS region transcription start site region 121493
Tssr118389 13 14065985 to 14065996 11 + TSS region transcription start site region 118389
D230040A04Rik 13 14065986 to 14069059 3073 unclassified gene RIKEN cDNA D230040A04 gene
Gm26129 13 14087439 to 14087545 106 + snRNA gene predicted gene, 26129
Tssr118390 13 14090956 to 14090976 20 + TSS region transcription start site region 118390
Tssr118391 13 14091010 to 14091016 6 + TSS region transcription start site region 118391
Tssr118392 13 14097456 to 14097467 11 + TSS region transcription start site region 118392
n-R5s52 13 14118743 to 14118855 112 - rRNA gene nuclear encoded rRNA 5S 52
Tssr118393 13 14142971 to 14142997 26 + TSS region transcription start site region 118393
Tssr118394 13 14161284 to 14161298 14 + TSS region transcription start site region 118394
Tssr118395 13 14161306 to 14161327 21 + TSS region transcription start site region 118395
Tssr118396 13 14164276 to 14164302 26 + TSS region transcription start site region 118396
Gm48027 13 14171053 to 14174488 3435 + sense intronic lncRNA gene predicted gene, 48027
Tssr118397 13 14176106 to 14176110 4 + TSS region transcription start site region 118397
Tssr118398 13 14186898 to 14186912 14 + TSS region transcription start site region 118398
Gm2492 13 14220545 to 14221938 1393 - pseudogene predicted gene 2492
Hecw1 13 14226438 to 14523228 296790 - protein coding gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1
Tssr118399 13 14236937 to 14236944 7 + TSS region transcription start site region 118399
Tssr121494 13 14317988 to 14318016 28 - TSS region transcription start site region 121494
Tssr121495 13 14318954 to 14318986 32 - TSS region transcription start site region 121495
Gm47011 13 14377987 to 14379573 1586 - unclassified gene predicted gene, 47011
Tssr3998 13 14487856 to 14487858 2 + TSS region transcription start site region 3998
Tssr118400 13 14510088 to 14510094 6 + TSS region transcription start site region 118400
Tssr121496 13 14521738 to 14521741 3 - TSS region transcription start site region 121496
Tssr121497 13 14521806 to 14521818 12 - TSS region transcription start site region 121497
Tssr121498 13 14522407 to 14522439 32 - TSS region transcription start site region 121498
Tssr121499 13 14522441 to 14522459 18 - TSS region transcription start site region 121499
Cpgi5290 13 14522452 to 14523144 692 CpG island CpG island 5290
Tssr118401 13 14522496 to 14522505 9 + TSS region transcription start site region 118401
Tssr118402 13 14522511 to 14522519 8 + TSS region transcription start site region 118402
Gm30893 13 14522562 to 14524500 1938 + antisense lncRNA gene predicted gene, 30893
Tssr121500 13 14523026 to 14523037 11 - TSS region transcription start site region 121500
Tssr121501 13 14523096 to 14523165 69 - TSS region transcription start site region 121501
Tssr121502 13 14523178 to 14523202 24 - TSS region transcription start site region 121502
Gm18858 13 14548554 to 14549539 985 + pseudogene predicted gene, 18858
D13Uth3 13 14558946 to 14559121 175 DNA segment DNA segment, Chr 13, University of Utah 3
Gm48096 13 14559118 to 14559309 191 + pseudogene predicted gene, 48096
Gm32526 13 14594870 to 14595687 817 + pseudogene predicted gene, 32526
Mrpl32 13 14610301 to 14613037 2736 - protein coding gene mitochondrial ribosomal protein L32
Cpgi5291 13 14612791 to 14613604 813 CpG island CpG island 5291
Tssr121503 13 14613017 to 14613056 39 - TSS region transcription start site region 121503
Psma2 13 14613242 to 14625673 12431 + protein coding gene proteasome (prosome, macropain) subunit, alpha type 2
Tssr118403 13 14613243 to 14613272 29 + TSS region transcription start site region 118403
Gm25444 13 14628619 to 14628731 112 - snRNA gene predicted gene, 25444
Cpgi5292 13 14630041 to 14630559 518 CpG island CpG island 5292
Tssr118404 13 14630237 to 14630296 59 + TSS region transcription start site region 118404
AW209491 13 14630245 to 14638202 7957 + protein coding gene expressed sequence AW209491
Gm19189 13 14863493 to 14864137 644 + pseudogene predicted gene, 19189
Gm48329 13 14943144 to 14944695 1551 + pseudogene predicted gene, 48329
D13Mit295 13 14964764 to 14964913 149 DNA segment DNA Segment, Chr 13, Massachusetts Institute of Technology-295
Gm31066 13 14996767 to 15019558 22791 - lncRNA gene predicted gene, 31066
Tssr3999 13 15103778 to 15103782 4 + TSS region transcription start site region 3999
Gm48338 13 15118386 to 15118631 245 - pseudogene predicted gene, 48338
Gm9512 13 15118632 to 15119128 496 + pseudogene predicted gene 9512
Gm20043 13 15375624 to 15413100 37476 + lincRNA gene predicted gene, 20043
Gm26645 13 15459980 to 15461295 1315 - lincRNA gene predicted gene, 26645
Gm6556 13 15459980 to 15464657 4677 - unclassified non-coding RNA gene predicted gene 6556
Cpgi5293 13 15462709 to 15464669 1960 CpG island CpG island 5293
Tssr118405 13 15463202 to 15463240 38 + TSS region transcription start site region 118405
Tssr118406 13 15463246 to 15463303 57 + TSS region transcription start site region 118406
Tssr118407 13 15463595 to 15463607 12 + TSS region transcription start site region 118407
Tssr118408 13 15463663 to 15463711 48 + TSS region transcription start site region 118408
Tssr118409 13 15463722 to 15463741 19 + TSS region transcription start site region 118409
Gli3 13 15463723 to 15730026 266303 + protein coding gene GLI-Kruppel family member GLI3
Tssr118410 13 15463837 to 15463938 101 + TSS region transcription start site region 118410
Tssr118411 13 15485448 to 15485452 4 + TSS region transcription start site region 118411
Tssr118412 13 15506747 to 15506750 3 + TSS region transcription start site region 118412
Tssr118413 13 15534464 to 15534467 3 + TSS region transcription start site region 118413
Tssr118414 13 15550917 to 15550922 5 + TSS region transcription start site region 118414
Tssr118415 13 15606371 to 15606378 7 + TSS region transcription start site region 118415
Tssr118416 13 15613837 to 15613850 13 + TSS region transcription start site region 118416
Tssr118417 13 15648093 to 15648097 4 + TSS region transcription start site region 118417
Gm48343 13 15649935 to 15650145 210 + pseudogene predicted gene, 48343
D13Mit264 13 15707091 to 15707215 124 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 264
Cpgi5294 13 15759124 to 15759600 476 CpG island CpG island 5294
Gm48408 13 15768990 to 15770120 1130 - unclassified gene predicted gene, 48408
Tssr4000 13 15771571 to 15771578 7 + TSS region transcription start site region 4000
Tssr121504 13 15777610 to 15777615 5 - TSS region transcription start site region 121504
4933412O06Rik 13 15781664 to 15802630 20966 - lincRNA gene RIKEN cDNA 4933412O06 gene
Tssr121505 13 15802627 to 15802638 11 - TSS region transcription start site region 121505
Tssr118418 13 15807241 to 15807243 2 + TSS region transcription start site region 118418
A530046M15Rik 13 15807243 to 15827537 20294 + lincRNA gene RIKEN cDNA A530046M15 gene
B230303A05Rik 13 15813548 to 16023423 209875 - pseudogene RIKEN cDNA B230303A05 gene
Gm48907 13 15814712 to 15815429 717 - pseudogene predicted gene, 48907
A530058O07Rik 13 15817316 to 15820679 3363 + unclassified gene RIKEN cDNA A530058O07 gene
D13Mit237 13 15842639 to 15842753 114 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 237
Tssr118419 13 15848319 to 15848340 21 + TSS region transcription start site region 118419
Tssr118420 13 15850946 to 15850950 4 + TSS region transcription start site region 118420
Tssr118421 13 15851026 to 15851035 9 + TSS region transcription start site region 118421
Tssr118422 13 15852537 to 15852539 2 + TSS region transcription start site region 118422
Tssr121506 13 15853105 to 15853114 9 - TSS region transcription start site region 121506
Tssr121507 13 15853133 to 15853153 20 - TSS region transcription start site region 121507
Tssr121508 13 15902506 to 15902523 17 - TSS region transcription start site region 121508
Tssr121509 13 15908746 to 15908764 18 - TSS region transcription start site region 121509
Tssr121510 13 15908789 to 15908801 12 - TSS region transcription start site region 121510
Tssr121511 13 15908855 to 15908882 27 - TSS region transcription start site region 121511
Tssr121512 13 15914355 to 15914363 8 - TSS region transcription start site region 121512
Tssr121513 13 15914377 to 15914393 16 - TSS region transcription start site region 121513
Tssr118423 13 15922191 to 15922199 8 + TSS region transcription start site region 118423
Tssr118424 13 15930231 to 15930236 5 + TSS region transcription start site region 118424
Tssr118425 13 15931679 to 15931683 4 + TSS region transcription start site region 118425
Gm31450 13 15931682 to 15934681 2999 + lincRNA gene predicted gene, 31450
Gm48928 13 15969864 to 15970410 546 - pseudogene predicted gene, 48928
Tssr121514 13 15980398 to 15980403 5 - TSS region transcription start site region 121514
Tssr118426 13 15994176 to 15994182 6 + TSS region transcription start site region 118426
Tssr118427 13 15994270 to 15994278 8 + TSS region transcription start site region 118427
Tssr121515 13 16003996 to 16004001 5 - TSS region transcription start site region 121515
Cpgi5295 13 16011812 to 16012567 755 CpG island CpG island 5295
Tssr118428 13 16011826 to 16011843 17 + TSS region transcription start site region 118428
Inhba 13 16011851 to 16031621 19770 + protein coding gene inhibin beta-A
Tssr118429 13 16011920 to 16011949 29 + TSS region transcription start site region 118429
Tssr118430 13 16012230 to 16012267 37 + TSS region transcription start site region 118430
Tssr118431 13 16014397 to 16014408 11 + TSS region transcription start site region 118431
Tssr118432 13 16014421 to 16014439 18 + TSS region transcription start site region 118432
Tssr118433 13 16014441 to 16014452 11 + TSS region transcription start site region 118433
Tssr118434 13 16014457 to 16014473 16 + TSS region transcription start site region 118434
Tssr118435 13 16016328 to 16016340 12 + TSS region transcription start site region 118435
Tssr118436 13 16016684 to 16016706 22 + TSS region transcription start site region 118436
Tssr118437 13 16016924 to 16016942 18 + TSS region transcription start site region 118437
Tssr118438 13 16017047 to 16017056 9 + TSS region transcription start site region 118438
Tssr118439 13 16017064 to 16017104 40 + TSS region transcription start site region 118439
Tssr118440 13 16017283 to 16017298 15 + TSS region transcription start site region 118440
Cpgi5296 13 16017324 to 16017797 473 CpG island CpG island 5296
Tssr118441 13 16017373 to 16017413 40 + TSS region transcription start site region 118441
Tssr118442 13 16017619 to 16017633 14 + TSS region transcription start site region 118442
Tssr118443 13 16018100 to 16018117 17 + TSS region transcription start site region 118443
Tssr118444 13 16018167 to 16018178 11 + TSS region transcription start site region 118444
Tssr118445 13 16019919 to 16019935 16 + TSS region transcription start site region 118445
Tssr118446 13 16021673 to 16021693 20 + TSS region transcription start site region 118446
Tssr121516 13 16023401 to 16023437 36 - TSS region transcription start site region 121516
Gm48444 13 16025382 to 16032275 6893 - antisense lncRNA gene predicted gene, 48444
Tssr118447 13 16026419 to 16026424 5 + TSS region transcription start site region 118447
Tssr118448 13 16026447 to 16026458 11 + TSS region transcription start site region 118448
Tssr118449 13 16026532 to 16026543 11 + TSS region transcription start site region 118449
Tssr121517 13 16026627 to 16026673 46 - TSS region transcription start site region 121517
Tssr118450 13 16026776 to 16026783 7 + TSS region transcription start site region 118450
Tssr118451 13 16026838 to 16026849 11 + TSS region transcription start site region 118451
Tssr118452 13 16026900 to 16026911 11 + TSS region transcription start site region 118452
Tssr118453 13 16026934 to 16026945 11 + TSS region transcription start site region 118453
Tssr118454 13 16026979 to 16027002 23 + TSS region transcription start site region 118454
Tssr118455 13 16027030 to 16027045 15 + TSS region transcription start site region 118455
Tssr118456 13 16027064 to 16027076 12 + TSS region transcription start site region 118456
Tssr118457 13 16027083 to 16027095 12 + TSS region transcription start site region 118457
Tssr118458 13 16027104 to 16027131 27 + TSS region transcription start site region 118458
Tssr118459 13 16027142 to 16027163 21 + TSS region transcription start site region 118459
Tssr121518 13 16027178 to 16027194 16 - TSS region transcription start site region 121518