Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:13134689-13994714

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm10811 13 13168730 to 13171177 2447 - protein coding gene predicted gene 10811
Tssr118353 13 13182712 to 13182717 5 + TSS region transcription start site region 118353
Prl2c5 13 13182715 to 13191923 9208 + protein coding gene prolactin family 2, subfamily c, member 5
Gm18880 13 13197379 to 13198919 1540 + pseudogene predicted gene, 18880
Gm48588 13 13204876 to 13207550 2674 + pseudogene predicted gene, 48588
Gm48589 13 13224663 to 13224925 262 - pseudogene predicted gene, 48589
Gm2423 13 13232161 to 13232893 732 - pseudogene predicted gene 2423
Tssr121472 13 13232962 to 13232970 8 - TSS region transcription start site region 121472
Gm5374 13 13275129 to 13275791 662 + pseudogene predicted gene 5374
Tssr118354 13 13275560 to 13275580 20 + TSS region transcription start site region 118354
Tssr118355 13 13275692 to 13275736 44 + TSS region transcription start site region 118355
Gm48590 13 13283832 to 13284247 415 + pseudogene predicted gene, 48590
Gm26133 13 13298243 to 13298342 99 - snRNA gene predicted gene, 26133
Gm7040 13 13320830 to 13322532 1702 - protein coding gene predicted gene 7040
Gm25804 13 13329484 to 13329671 187 + snoRNA gene predicted gene, 25804
Gm18562 13 13330635 to 13348157 17522 + pseudogene predicted gene, 18562
Gpr137b 13 13357620 to 13394014 36394 - protein coding gene G protein-coupled receptor 137B
Tssr121473 13 13359656 to 13359660 4 - TSS region transcription start site region 121473
Cpgi5283 13 13393358 to 13393677 319 CpG island CpG island 5283
Tssr121474 13 13393394 to 13393423 29 - TSS region transcription start site region 121474
Tssr121475 13 13393525 to 13393561 36 - TSS region transcription start site region 121475
Tssr121476 13 13393592 to 13393597 5 - TSS region transcription start site region 121476
Cpgi5284 13 13394001 to 13394207 206 CpG island CpG island 5284
Gm23081 13 13402836 to 13403132 296 + unclassified non-coding RNA gene predicted gene, 23081
Gm48661 13 13412440 to 13412794 354 - pseudogene predicted gene, 48661
Gm48672 13 13417147 to 13418200 1053 + pseudogene predicted gene, 48672
Gm7426 13 13418766 to 13419169 403 - pseudogene predicted gene 7426
Nid1 13 13437602 to 13512275 74673 + protein coding gene nidogen 1
Tssr118356 13 13468389 to 13468415 26 + TSS region transcription start site region 118356
Gm48682 13 13474343 to 13482405 8062 - antisense lncRNA gene predicted gene, 48682
Tssr3994 13 13481003 to 13481004 1 + TSS region transcription start site region 3994
Tssr118357 13 13490108 to 13490125 17 + TSS region transcription start site region 118357
D13Mit44 13 13510259 to 13510382 123 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 44
Tssr118358 13 13512151 to 13512158 7 + TSS region transcription start site region 118358
Gm48783 13 13514738 to 13515817 1079 + unclassified gene predicted gene, 48783
Tssr121477 13 13526001 to 13526017 16 - TSS region transcription start site region 121477
Tssr118359 13 13526143 to 13526146 3 + TSS region transcription start site region 118359
Tssr3995 13 13529271 to 13529307 36 + TSS region transcription start site region 3995
Tssr118360 13 13529543 to 13529551 8 + TSS region transcription start site region 118360
Tssr121478 13 13537659 to 13537666 7 - TSS region transcription start site region 121478
Tssr3996 13 13538516 to 13538545 29 - TSS region transcription start site region 3996
Tssr121479 13 13558921 to 13558935 14 - TSS region transcription start site region 121479
Tssr118361 13 13559089 to 13559113 24 + TSS region transcription start site region 118361
Tssr118362 13 13559133 to 13559138 5 + TSS region transcription start site region 118362
Tssr121480 13 13564689 to 13564714 25 - TSS region transcription start site region 121480
D13Sfk5 13 13567262 to 13567416 154 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 5
Tssr118363 13 13574124 to 13574156 32 + TSS region transcription start site region 118363
Tssr118364 13 13576592 to 13576626 34 + TSS region transcription start site region 118364
D13Sfk18 13 13581646 to 13581765 119 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 18
Gm30836 13 13586046 to 13591868 5822 - lncRNA gene predicted gene, 30836
Cpgi5285 13 13590087 to 13591073 986 CpG island CpG island 5285
Tssr121481 13 13590124 to 13590132 8 - TSS region transcription start site region 121481
Tssr118365 13 13590316 to 13590338 22 + TSS region transcription start site region 118365
Tssr118366 13 13590369 to 13590376 7 + TSS region transcription start site region 118366
Lyst 13 13590397 to 13778803 188406 + protein coding gene lysosomal trafficking regulator
Tssr118367 13 13590402 to 13590456 54 + TSS region transcription start site region 118367
Tssr118368 13 13590459 to 13590471 12 + TSS region transcription start site region 118368
D13Sfk16 13 13599223 to 13599298 75 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 16
Tssr118369 13 13628425 to 13628445 20 + TSS region transcription start site region 118369
Tssr118370 13 13634939 to 13634964 25 + TSS region transcription start site region 118370
Tssr118371 13 13638279 to 13638296 17 + TSS region transcription start site region 118371
Tssr118372 13 13694452 to 13694463 11 + TSS region transcription start site region 118372
Tssr118373 13 13698702 to 13698714 12 + TSS region transcription start site region 118373
Tssr118374 13 13699196 to 13699211 15 + TSS region transcription start site region 118374
Tssr118375 13 13709946 to 13709965 19 + TSS region transcription start site region 118375
Tssr118376 13 13710219 to 13710238 19 + TSS region transcription start site region 118376
Tssr118377 13 13712716 to 13712735 19 + TSS region transcription start site region 118377
Tssr118378 13 13712772 to 13712787 15 + TSS region transcription start site region 118378
D13Sfk15 13 13726148 to 13726207 59 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 15
Tssr118379 13 13765534 to 13765548 14 + TSS region transcription start site region 118379
Tssr118380 13 13769362 to 13769376 14 + TSS region transcription start site region 118380
Cpgi5286 13 13783787 to 13785653 1866 CpG island CpG island 5286
Tssr118381 13 13784018 to 13784068 50 + TSS region transcription start site region 118381
Gng4 13 13784059 to 13827895 43836 + protein coding gene guanine nucleotide binding protein (G protein), gamma 4
Tssr118382 13 13784278 to 13784365 87 + TSS region transcription start site region 118382
Tssr118383 13 13784370 to 13784414 44 + TSS region transcription start site region 118383
Gm25271 13 13789344 to 13789633 289 + unclassified non-coding RNA gene predicted gene, 25271
D13Sfk19 13 13793948 to 13794110 162 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 19
D13Sfk17 13 13825379 to 13825453 74 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 17
Tssr118384 13 13825450 to 13825463 13 + TSS region transcription start site region 118384
Gm7441 13 13842242 to 13844250 2008 + pseudogene predicted gene 7441
Tssr3997 13 13845588 to 13845589 1 + TSS region transcription start site region 3997
Gm47882 13 13862534 to 13893979 31445 + lincRNA gene predicted gene, 47882
Tssr121482 13 13862905 to 13862912 7 - TSS region transcription start site region 121482
Gm7446 13 13890760 to 13891999 1239 - pseudogene predicted gene 7446
Gm7046 13 13895807 to 13910408 14601 - pseudogene predicted gene 7046
Gm47884 13 13953219 to 13954338 1119 + bidirectional promoter lncRNA gene predicted gene, 47884
Cpgi5287 13 13953881 to 13955394 1513 CpG island CpG island 5287
Tssr121483 13 13954332 to 13954370 38 - TSS region transcription start site region 121483
B3galnt2 13 13954474 to 13999088 44614 + protein coding gene UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
Tssr118385 13 13954539 to 13954555 16 + TSS region transcription start site region 118385
Tssr118386 13 13954614 to 13954691 77 + TSS region transcription start site region 118386
Tssr118387 13 13954694 to 13954705 11 + TSS region transcription start site region 118387
Gm18856 13 13964475 to 13965860 1385 - pseudogene predicted gene, 18856
Tssr121484 13 13968897 to 13968923 26 - TSS region transcription start site region 121484