Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:12389343-14567405

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220 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi5276 13 12394772 to 12395939 1167 CpG island CpG island 5276
Tssr118342 13 12395347 to 12395358 11 + TSS region transcription start site region 118342
Tssr118343 13 12395362 to 12395415 53 + TSS region transcription start site region 118343
Heatr1 13 12395375 to 12438893 43518 + protein coding gene HEAT repeat containing 1
Tssr118344 13 12408520 to 12408555 35 + TSS region transcription start site region 118344
Gm5928 13 12425140 to 12425605 465 - pseudogene predicted gene 5928
Lgals8 13 12439415 to 12464944 25529 - protein coding gene lectin, galactose binding, soluble 8
Cpgi5277 13 12453229 to 12453522 293 CpG island CpG island 5277
Tssr121450 13 12457450 to 12457462 12 - TSS region transcription start site region 121450
Tssr121451 13 12459125 to 12459126 1 - TSS region transcription start site region 121451
Tssr121452 13 12459268 to 12459282 14 - TSS region transcription start site region 121452
Tssr118345 13 12460670 to 12460697 27 + TSS region transcription start site region 118345
Cpgi5278 13 12460959 to 12461737 778 CpG island CpG island 5278
Tssr121453 13 12461099 to 12461113 14 - TSS region transcription start site region 121453
Tssr121454 13 12461410 to 12461417 7 - TSS region transcription start site region 121454
Tssr121455 13 12461432 to 12461520 88 - TSS region transcription start site region 121455
Tssr121456 13 12461538 to 12461549 11 - TSS region transcription start site region 121456
Tssr121457 13 12461562 to 12461573 11 - TSS region transcription start site region 121457
Tssr121458 13 12464925 to 12464949 24 - TSS region transcription start site region 121458
Tssr121459 13 12464951 to 12464959 8 - TSS region transcription start site region 121459
Tssr118346 13 12468720 to 12468737 17 + TSS region transcription start site region 118346
Tssr118347 13 12468857 to 12468877 20 + TSS region transcription start site region 118347
Edaradd 13 12472632 to 12520438 47806 - protein coding gene EDAR (ectodysplasin-A receptor)-associated death domain
Tssr121460 13 12473533 to 12473538 5 - TSS region transcription start site region 121460
Tssr121461 13 12475496 to 12475546 50 - TSS region transcription start site region 121461
Tssr121462 13 12501999 to 12502001 2 - TSS region transcription start site region 121462
Cpgi5279 13 12519385 to 12520552 1167 CpG island CpG island 5279
Tssr121463 13 12520054 to 12520097 43 - TSS region transcription start site region 121463
Tssr121464 13 12520377 to 12520417 40 - TSS region transcription start site region 121464
Tssr121465 13 12527011 to 12527015 4 - TSS region transcription start site region 121465
Gm30239 13 12540143 to 12562716 22573 + lincRNA gene predicted gene, 30239
Cpgi5280 13 12540229 to 12540402 173 CpG island CpG island 5280
Cpgi5281 13 12565579 to 12566645 1066 CpG island CpG island 5281
Ero1lb 13 12565808 to 12609533 43725 + protein coding gene ERO1-like beta (S. cerevisiae)
Tssr118348 13 12565868 to 12565879 11 + TSS region transcription start site region 118348
Tssr118349 13 12565891 to 12565914 23 + TSS region transcription start site region 118349
Tssr118350 13 12565926 to 12565940 14 + TSS region transcription start site region 118350
Tssr118351 13 12565955 to 12565962 7 + TSS region transcription start site region 118351
Gm25483 13 12589565 to 12589791 226 + snoRNA gene predicted gene, 25483
Gpr137b-ps 13 12615057 to 12650388 35331 - pseudogene G protein-coupled receptor 137B, pseudogene
Tssr121466 13 12616082 to 12616085 3 - TSS region transcription start site region 121466
Cpgi5282 13 12650153 to 12650472 319 CpG island CpG island 5282
Tssr121467 13 12650183 to 12650222 39 - TSS region transcription start site region 121467
Tssr121468 13 12650318 to 12650357 39 - TSS region transcription start site region 121468
Gm24065 13 12666051 to 12666314 263 + unclassified non-coding RNA gene predicted gene, 24065
Gm48440 13 12675601 to 12675957 356 - pseudogene predicted gene, 48440
Gm48445 13 12679747 to 12679939 192 - pseudogene predicted gene, 48445
Gm48455 13 12679940 to 12680359 419 + pseudogene predicted gene, 48455
Gm48456 13 12682289 to 12683041 752 + pseudogene predicted gene, 48456
Gm48458 13 12683610 to 12684013 403 - pseudogene predicted gene, 48458
Gm2399 13 12702362 to 12702586 224 + protein coding gene predicted gene 2399
D13Mit114 13 12714758 to 12714904 146 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 114
Gm7042 13 12734379 to 12734762 383 + pseudogene predicted gene 7042
Prl2c3 13 12790816 to 12800079 9263 - protein coding gene prolactin family 2, subfamily c, member 3
Tssr121469 13 12800077 to 12800081 4 - TSS region transcription start site region 121469
Gm18262 13 12864124 to 12866069 1945 + pseudogene predicted gene, 18262
Gm2544 13 12866723 to 12873784 7061 - pseudogene predicted gene 2544
Gm18878 13 12879755 to 12881197 1442 - pseudogene predicted gene, 18878
Tssr121470 13 12912996 to 12912998 2 - TSS region transcription start site region 121470
Gm48527 13 12917710 to 12917965 255 - pseudogene predicted gene, 48527
Gm40904 13 12925762 to 12932245 6483 + lncRNA gene predicted gene, 40904
Prl2c2 13 12996120 to 13005330 9210 - protein coding gene prolactin family 2, subfamily c, member 2
Tssr121471 13 13005391 to 13005394 3 - TSS region transcription start site region 121471
Gm40903 13 13030789 to 13033906 3117 + lncRNA gene predicted gene, 40903
Tssr118352 13 13030976 to 13030979 3 + TSS region transcription start site region 118352
Gm48544 13 13034858 to 13038936 4078 + lincRNA gene predicted gene, 48544
Gm18263 13 13076118 to 13078045 1927 + pseudogene predicted gene, 18263
Gm32300 13 13078699 to 13081305 2606 - pseudogene predicted gene, 32300
Gm18879 13 13103874 to 13105410 1536 + pseudogene predicted gene, 18879
Gm9628 13 13113355 to 13118597 5242 + pseudogene predicted gene 9628
Gm18259 13 13119254 to 13121263 2009 - pseudogene predicted gene, 18259
Gm10811 13 13168730 to 13171177 2447 - protein coding gene predicted gene 10811
Tssr118353 13 13182712 to 13182717 5 + TSS region transcription start site region 118353
Prl2c5 13 13182715 to 13191923 9208 + protein coding gene prolactin family 2, subfamily c, member 5
Gm18880 13 13197379 to 13198919 1540 + pseudogene predicted gene, 18880
Gm48588 13 13204876 to 13207550 2674 + pseudogene predicted gene, 48588
Gm48589 13 13224663 to 13224925 262 - pseudogene predicted gene, 48589
Gm2423 13 13232161 to 13232893 732 - pseudogene predicted gene 2423
Tssr121472 13 13232962 to 13232970 8 - TSS region transcription start site region 121472
Gm5374 13 13275129 to 13275791 662 + pseudogene predicted gene 5374
Tssr118354 13 13275560 to 13275580 20 + TSS region transcription start site region 118354
Tssr118355 13 13275692 to 13275736 44 + TSS region transcription start site region 118355
Gm48590 13 13283832 to 13284247 415 + pseudogene predicted gene, 48590
Gm26133 13 13298243 to 13298342 99 - snRNA gene predicted gene, 26133
Gm7040 13 13320830 to 13322532 1702 - protein coding gene predicted gene 7040
Gm25804 13 13329484 to 13329671 187 + snoRNA gene predicted gene, 25804
Gm18562 13 13330635 to 13348157 17522 + pseudogene predicted gene, 18562
Gpr137b 13 13357620 to 13394014 36394 - protein coding gene G protein-coupled receptor 137B
Tssr121473 13 13359656 to 13359660 4 - TSS region transcription start site region 121473
Cpgi5283 13 13393358 to 13393677 319 CpG island CpG island 5283
Tssr121474 13 13393394 to 13393423 29 - TSS region transcription start site region 121474
Tssr121475 13 13393525 to 13393561 36 - TSS region transcription start site region 121475
Tssr121476 13 13393592 to 13393597 5 - TSS region transcription start site region 121476
Cpgi5284 13 13394001 to 13394207 206 CpG island CpG island 5284
Gm23081 13 13402836 to 13403132 296 + unclassified non-coding RNA gene predicted gene, 23081
Gm48661 13 13412440 to 13412794 354 - pseudogene predicted gene, 48661
Gm48672 13 13417147 to 13418200 1053 + pseudogene predicted gene, 48672
Gm7426 13 13418766 to 13419169 403 - pseudogene predicted gene 7426
Nid1 13 13437602 to 13512275 74673 + protein coding gene nidogen 1
Tssr118356 13 13468389 to 13468415 26 + TSS region transcription start site region 118356
Gm48682 13 13474343 to 13482405 8062 - antisense lncRNA gene predicted gene, 48682
Tssr3994 13 13481003 to 13481004 1 + TSS region transcription start site region 3994
Tssr118357 13 13490108 to 13490125 17 + TSS region transcription start site region 118357
D13Mit44 13 13510259 to 13510382 123 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 44
Tssr118358 13 13512151 to 13512158 7 + TSS region transcription start site region 118358
Gm48783 13 13514738 to 13515817 1079 + unclassified gene predicted gene, 48783
Tssr121477 13 13526001 to 13526017 16 - TSS region transcription start site region 121477
Tssr118359 13 13526143 to 13526146 3 + TSS region transcription start site region 118359
Tssr3995 13 13529271 to 13529307 36 + TSS region transcription start site region 3995
Tssr118360 13 13529543 to 13529551 8 + TSS region transcription start site region 118360
Tssr121478 13 13537659 to 13537666 7 - TSS region transcription start site region 121478
Tssr3996 13 13538516 to 13538545 29 - TSS region transcription start site region 3996
Tssr121479 13 13558921 to 13558935 14 - TSS region transcription start site region 121479
Tssr118361 13 13559089 to 13559113 24 + TSS region transcription start site region 118361
Tssr118362 13 13559133 to 13559138 5 + TSS region transcription start site region 118362
Tssr121480 13 13564689 to 13564714 25 - TSS region transcription start site region 121480
D13Sfk5 13 13567262 to 13567416 154 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 5
Tssr118363 13 13574124 to 13574156 32 + TSS region transcription start site region 118363
Tssr118364 13 13576592 to 13576626 34 + TSS region transcription start site region 118364
D13Sfk18 13 13581646 to 13581765 119 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 18
Gm30836 13 13586046 to 13591868 5822 - lncRNA gene predicted gene, 30836
Cpgi5285 13 13590087 to 13591073 986 CpG island CpG island 5285
Tssr121481 13 13590124 to 13590132 8 - TSS region transcription start site region 121481
Tssr118365 13 13590316 to 13590338 22 + TSS region transcription start site region 118365
Tssr118366 13 13590369 to 13590376 7 + TSS region transcription start site region 118366
Lyst 13 13590397 to 13778803 188406 + protein coding gene lysosomal trafficking regulator
Tssr118367 13 13590402 to 13590456 54 + TSS region transcription start site region 118367
Tssr118368 13 13590459 to 13590471 12 + TSS region transcription start site region 118368
D13Sfk16 13 13599223 to 13599298 75 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 16
Tssr118369 13 13628425 to 13628445 20 + TSS region transcription start site region 118369
Tssr118370 13 13634939 to 13634964 25 + TSS region transcription start site region 118370
Tssr118371 13 13638279 to 13638296 17 + TSS region transcription start site region 118371
Tssr118372 13 13694452 to 13694463 11 + TSS region transcription start site region 118372
Tssr118373 13 13698702 to 13698714 12 + TSS region transcription start site region 118373
Tssr118374 13 13699196 to 13699211 15 + TSS region transcription start site region 118374
Tssr118375 13 13709946 to 13709965 19 + TSS region transcription start site region 118375
Tssr118376 13 13710219 to 13710238 19 + TSS region transcription start site region 118376
Tssr118377 13 13712716 to 13712735 19 + TSS region transcription start site region 118377
Tssr118378 13 13712772 to 13712787 15 + TSS region transcription start site region 118378
D13Sfk15 13 13726148 to 13726207 59 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 15
Tssr118379 13 13765534 to 13765548 14 + TSS region transcription start site region 118379
Tssr118380 13 13769362 to 13769376 14 + TSS region transcription start site region 118380
Cpgi5286 13 13783787 to 13785653 1866 CpG island CpG island 5286
Tssr118381 13 13784018 to 13784068 50 + TSS region transcription start site region 118381
Gng4 13 13784059 to 13827895 43836 + protein coding gene guanine nucleotide binding protein (G protein), gamma 4
Tssr118382 13 13784278 to 13784365 87 + TSS region transcription start site region 118382
Tssr118383 13 13784370 to 13784414 44 + TSS region transcription start site region 118383
Gm25271 13 13789344 to 13789633 289 + unclassified non-coding RNA gene predicted gene, 25271
D13Sfk19 13 13793948 to 13794110 162 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 19
D13Sfk17 13 13825379 to 13825453 74 DNA segment DNA segment, Chr 13, Stephen F. Kingsmore 17
Tssr118384 13 13825450 to 13825463 13 + TSS region transcription start site region 118384
Gm7441 13 13842242 to 13844250 2008 + pseudogene predicted gene 7441
Tssr3997 13 13845588 to 13845589 1 + TSS region transcription start site region 3997
Gm47882 13 13862534 to 13893979 31445 + lincRNA gene predicted gene, 47882
Tssr121482 13 13862905 to 13862912 7 - TSS region transcription start site region 121482
Gm7446 13 13890760 to 13891999 1239 - pseudogene predicted gene 7446
Gm7046 13 13895807 to 13910408 14601 - pseudogene predicted gene 7046
Gm47884 13 13953219 to 13954338 1119 + bidirectional promoter lncRNA gene predicted gene, 47884
Cpgi5287 13 13953881 to 13955394 1513 CpG island CpG island 5287
Tssr121483 13 13954332 to 13954370 38 - TSS region transcription start site region 121483
B3galnt2 13 13954474 to 13999088 44614 + protein coding gene UDP-GalNAc:betaGlcNAc beta 1,3-galactosaminyltransferase, polypeptide 2
Tssr118385 13 13954539 to 13954555 16 + TSS region transcription start site region 118385
Tssr118386 13 13954614 to 13954691 77 + TSS region transcription start site region 118386
Tssr118387 13 13954694 to 13954705 11 + TSS region transcription start site region 118387
Gm18856 13 13964475 to 13965860 1385 - pseudogene predicted gene, 18856
Tssr121484 13 13968897 to 13968923 26 - TSS region transcription start site region 121484
Tbce 13 13997949 to 14039638 41689 - protein coding gene tubulin-specific chaperone E
Tssr121485 13 14026714 to 14026726 12 - TSS region transcription start site region 121485
D13Uth2 13 14027132 to 14027347 215 DNA segment DNA segment, Chr 13, University of Utah 2
D13Uth5 13 14027132 to 14027348 216 DNA segment DNA segment, Chr 13, University of Utah 5
Cpgi5288 13 14039287 to 14039805 518 CpG island CpG island 5288
Tssr121486 13 14039576 to 14039589 13 - TSS region transcription start site region 121486
Tssr121487 13 14039595 to 14039639 44 - TSS region transcription start site region 121487
Gm48017 13 14041392 to 14041599 207 + pseudogene predicted gene, 48017
Ggps1 13 14050659 to 14063488 12829 - protein coding gene geranylgeranyl diphosphate synthase 1
Cpgi5289 13 14062843 to 14065166 2323 CpG island CpG island 5289
Tssr121488 13 14063245 to 14063256 11 - TSS region transcription start site region 121488
Tssr121489 13 14063268 to 14063278 10 - TSS region transcription start site region 121489
Tssr121490 13 14063292 to 14063306 14 - TSS region transcription start site region 121490
Tssr121491 13 14063377 to 14063384 7 - TSS region transcription start site region 121491
Tssr121492 13 14063395 to 14063436 41 - TSS region transcription start site region 121492
Arid4b 13 14063609 to 14199603 135994 + protein coding gene AT rich interactive domain 4B (RBP1-like)
Tssr118388 13 14063776 to 14063822 46 + TSS region transcription start site region 118388
Tssr121493 13 14064700 to 14064710 10 - TSS region transcription start site region 121493
Tssr118389 13 14065985 to 14065996 11 + TSS region transcription start site region 118389
D230040A04Rik 13 14065986 to 14069059 3073 unclassified gene RIKEN cDNA D230040A04 gene
Gm26129 13 14087439 to 14087545 106 + snRNA gene predicted gene, 26129
Tssr118390 13 14090956 to 14090976 20 + TSS region transcription start site region 118390
Tssr118391 13 14091010 to 14091016 6 + TSS region transcription start site region 118391
Tssr118392 13 14097456 to 14097467 11 + TSS region transcription start site region 118392
n-R5s52 13 14118743 to 14118855 112 - rRNA gene nuclear encoded rRNA 5S 52
Tssr118393 13 14142971 to 14142997 26 + TSS region transcription start site region 118393
Tssr118394 13 14161284 to 14161298 14 + TSS region transcription start site region 118394
Tssr118395 13 14161306 to 14161327 21 + TSS region transcription start site region 118395
Tssr118396 13 14164276 to 14164302 26 + TSS region transcription start site region 118396
Gm48027 13 14171053 to 14174488 3435 + sense intronic lncRNA gene predicted gene, 48027
Tssr118397 13 14176106 to 14176110 4 + TSS region transcription start site region 118397
Tssr118398 13 14186898 to 14186912 14 + TSS region transcription start site region 118398
Gm2492 13 14220545 to 14221938 1393 - pseudogene predicted gene 2492
Hecw1 13 14226438 to 14523228 296790 - protein coding gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1