Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:12093135-12423185

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ryr2 13 11553102 to 12106945 553843 - protein coding gene ryanodine receptor 2, cardiac
Tssr121417 13 12104484 to 12104488 4 - TSS region transcription start site region 121417
Tssr121418 13 12104519 to 12104525 6 - TSS region transcription start site region 121418
Tssr121419 13 12105394 to 12105406 12 - TSS region transcription start site region 121419
Tssr121420 13 12105431 to 12105442 11 - TSS region transcription start site region 121420
Cpgi5273 13 12105592 to 12107372 1780 CpG island CpG island 5273
Tssr121421 13 12106670 to 12106703 33 - TSS region transcription start site region 121421
Tssr121422 13 12106838 to 12106854 16 - TSS region transcription start site region 121422
Tssr121423 13 12106857 to 12106868 11 - TSS region transcription start site region 121423
Tssr121424 13 12106869 to 12106881 12 - TSS region transcription start site region 121424
Tssr121425 13 12106975 to 12106984 9 - TSS region transcription start site region 121425
Tssr118338 13 12133878 to 12133883 5 + TSS region transcription start site region 118338
Tssr118339 13 12156339 to 12156376 37 + TSS region transcription start site region 118339
Gm47323 13 12160754 to 12160964 210 + pseudogene predicted gene, 47323
Gm16419 13 12171526 to 12172150 624 - pseudogene predicted gene 16419
Tssr121426 13 12176863 to 12176871 8 - TSS region transcription start site region 121426
Gm47322 13 12177458 to 12179281 1823 - unclassified gene predicted gene, 47322
Mtr 13 12182712 to 12258113 75401 - protein coding gene 5-methyltetrahydrofolate-homocysteine methyltransferase
Gm10336 13 12182717 to 12186488 3771 - lncRNA gene predicted gene 10336
Tssr121427 13 12200405 to 12200417 12 - TSS region transcription start site region 121427
Tssr121428 13 12200480 to 12200500 20 - TSS region transcription start site region 121428
Tssr121429 13 12228391 to 12228409 18 - TSS region transcription start site region 121429
Tssr121430 13 12244085 to 12244112 27 - TSS region transcription start site region 121430
Cpgi5274 13 12257569 to 12258338 769 CpG island CpG island 5274
Tssr121431 13 12258043 to 12258062 19 - TSS region transcription start site region 121431
Tssr121432 13 12258093 to 12258134 41 - TSS region transcription start site region 121432
Tssr121433 13 12258135 to 12258185 50 - TSS region transcription start site region 121433
Gm47021 13 12259793 to 12260270 477 - pseudogene predicted gene, 47021
Tssr121434 13 12260163 to 12260204 41 - TSS region transcription start site region 121434
Actn2 13 12269426 to 12340732 71306 - protein coding gene actinin alpha 2
Tssr121435 13 12274070 to 12274108 38 - TSS region transcription start site region 121435
Tssr121436 13 12274116 to 12274126 10 - TSS region transcription start site region 121436
Tssr121437 13 12274136 to 12274156 20 - TSS region transcription start site region 121437
Tssr121438 13 12275696 to 12275699 3 - TSS region transcription start site region 121438
Tssr118340 13 12276417 to 12276436 19 + TSS region transcription start site region 118340
Tssr121439 13 12278909 to 12278932 23 - TSS region transcription start site region 121439
Tssr121440 13 12278937 to 12278948 11 - TSS region transcription start site region 121440
Tssr121441 13 12291772 to 12291806 34 - TSS region transcription start site region 121441
Tssr121442 13 12306656 to 12306658 2 - TSS region transcription start site region 121442
Tssr121443 13 12309705 to 12309717 12 - TSS region transcription start site region 121443
Gm30026 13 12309722 to 12310844 1122 + lncRNA gene predicted gene, 30026
Gm40667 13 12310900 to 12323960 13060 + lncRNA gene predicted gene, 40667
D13Mit173 13 12330386 to 12330533 147 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 173
Tssr121444 13 12332059 to 12332104 45 - TSS region transcription start site region 121444
Tssr121445 13 12332196 to 12332214 18 - TSS region transcription start site region 121445
Tssr121446 13 12332415 to 12332436 21 - TSS region transcription start site region 121446
Tssr121447 13 12336547 to 12336571 24 - TSS region transcription start site region 121447
Cpgi5275 13 12340314 to 12340992 678 CpG island CpG island 5275
Tssr118341 13 12340485 to 12340488 3 + TSS region transcription start site region 118341
Tssr121448 13 12340510 to 12340545 35 - TSS region transcription start site region 121448
Tssr121449 13 12340723 to 12340739 16 - TSS region transcription start site region 121449
Gm5445 13 12378158 to 12378637 479 + pseudogene predicted gene 5445
Cpgi5276 13 12394772 to 12395939 1167 CpG island CpG island 5276
Tssr118342 13 12395347 to 12395358 11 + TSS region transcription start site region 118342
Tssr118343 13 12395362 to 12395415 53 + TSS region transcription start site region 118343
Heatr1 13 12395375 to 12438893 43518 + protein coding gene HEAT repeat containing 1
Tssr118344 13 12408520 to 12408555 35 + TSS region transcription start site region 118344