Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:119410420-119970431

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi6142 13 119428282 to 119429876 1594 CpG island CpG island 6142
Tssr121251 13 119428382 to 119428385 3 + TSS region transcription start site region 121251
Tssr121252 13 119428396 to 119428413 17 + TSS region transcription start site region 121252
Tssr121253 13 119428416 to 119428446 30 + TSS region transcription start site region 121253
Tssr121254 13 119428449 to 119428485 36 + TSS region transcription start site region 121254
Tssr121255 13 119428490 to 119428504 14 + TSS region transcription start site region 121255
Tssr121256 13 119428561 to 119428575 14 + TSS region transcription start site region 121256
Tssr121257 13 119428583 to 119428612 29 + TSS region transcription start site region 121257
Paip1 13 119428601 to 119458218 29617 + protein coding gene polyadenylate binding protein-interacting protein 1
Tssr121258 13 119428888 to 119428960 72 + TSS region transcription start site region 121258
Tssr121259 13 119429265 to 119429272 7 + TSS region transcription start site region 121259
Tssr121260 13 119429669 to 119429680 11 + TSS region transcription start site region 121260
Tssr121261 13 119429715 to 119429730 15 + TSS region transcription start site region 121261
Tssr121262 13 119457134 to 119457138 4 + TSS region transcription start site region 121262
Cpgi6143 13 119462585 to 119463181 596 CpG island CpG island 6143
Tssr121263 13 119462752 to 119462810 58 + TSS region transcription start site region 121263
4833420G17Rik 13 119462768 to 119486120 23352 + protein coding gene RIKEN cDNA 4833420G17 gene
Tssr121264 13 119462835 to 119462856 21 + TSS region transcription start site region 121264
Tgq24 13 119466094 to 119466094 0 QTL triglyceride QTL 24
Tssr121265 13 119466393 to 119466397 4 + TSS region transcription start site region 121265
Gm9752 13 119473804 to 119476761 2957 - unclassified non-coding RNA gene predicted gene 9752
3110070M22Rik 13 119487261 to 119488383 1122 - unclassified gene RIKEN cDNA 3110070M22 gene
Cpgi6144 13 119487759 to 119489202 1443 CpG island CpG island 6144
Tmem267 13 119488039 to 119610459 122420 + protein coding gene transmembrane protein 267
Tssr121266 13 119488080 to 119488093 13 + TSS region transcription start site region 121266
Tssr121267 13 119488116 to 119488124 8 + TSS region transcription start site region 121267
Tssr124201 13 119488334 to 119488389 55 - TSS region transcription start site region 124201
Tssr124202 13 119488402 to 119488411 9 - TSS region transcription start site region 124202
Tssr121268 13 119488425 to 119488478 53 + TSS region transcription start site region 121268
Tssr121269 13 119488487 to 119488529 42 + TSS region transcription start site region 121269
Tssr121270 13 119488661 to 119488736 75 + TSS region transcription start site region 121270
Tssr121271 13 119488809 to 119488837 28 + TSS region transcription start site region 121271
Cpgi6145 13 119494984 to 119495472 488 CpG island CpG island 6145
Tssr4184 13 119597787 to 119597805 18 - TSS region transcription start site region 4184
Tssr4185 13 119598005 to 119598039 34 - TSS region transcription start site region 4185
Tssr4186 13 119601513 to 119601531 18 - TSS region transcription start site region 4186
Gm48265 13 119609765 to 119613472 3707 - lincRNA gene predicted gene, 48265
Tssr4187 13 119613858 to 119613878 20 - TSS region transcription start site region 4187
Tssr4188 13 119623796 to 119623811 15 + TSS region transcription start site region 4188
Ccl28 13 119623819 to 119654359 30540 + protein coding gene chemokine (C-C motif) ligand 28
Tssr4189 13 119623826 to 119623869 43 + TSS region transcription start site region 4189
Tssr4190 13 119649406 to 119649445 39 + TSS region transcription start site region 4190
Gm48300 13 119655462 to 119655858 396 - pseudogene predicted gene, 48300
Tssr4191 13 119680038 to 119680059 21 + TSS region transcription start site region 4191
1700074H08Rik 13 119680042 to 119681582 1540 + lincRNA gene RIKEN cDNA 1700074H08 gene
Tssr4192 13 119689928 to 119689956 28 - TSS region transcription start site region 4192
Hmgcs1 13 119690379 to 119708260 17881 + protein coding gene 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1
Tssr4193 13 119690384 to 119690400 16 + TSS region transcription start site region 4193
Tssr4194 13 119690420 to 119690431 11 + TSS region transcription start site region 4194
Tssr4195 13 119690452 to 119690471 19 + TSS region transcription start site region 4195
Tssr4196 13 119695849 to 119695872 23 - TSS region transcription start site region 4196
Gm48342 13 119698360 to 119704549 6189 - antisense lncRNA gene predicted gene, 48342
Tssr4197 13 119699928 to 119699954 26 + TSS region transcription start site region 4197
Tssr4198 13 119707246 to 119707370 124 + TSS region transcription start site region 4198
Nim1k 13 119710094 to 119755882 45788 - protein coding gene NIM1 serine/threonine protein kinase
Tssr4199 13 119713902 to 119713905 3 + TSS region transcription start site region 4199
Tssr4200 13 119727777 to 119727787 10 - TSS region transcription start site region 4200
Tssr4201 13 119728413 to 119728420 7 - TSS region transcription start site region 4201
Tssr4202 13 119732772 to 119732774 2 - TSS region transcription start site region 4202
Tssr4203 13 119755387 to 119755398 11 + TSS region transcription start site region 4203
Tssr4204 13 119755813 to 119755826 13 - TSS region transcription start site region 4204
Tssr4205 13 119755844 to 119755909 65 - TSS region transcription start site region 4205
Tssr4206 13 119755944 to 119755958 14 - TSS region transcription start site region 4206
Tssr4207 13 119755968 to 119756035 67 - TSS region transcription start site region 4207
Gm41077 13 119756093 to 119769532 13439 + antisense lncRNA gene predicted gene, 41077
Tssr4208 13 119756112 to 119756148 36 + TSS region transcription start site region 4208
Zfp131 13 119765187 to 119790889 25702 - protein coding gene zinc finger protein 131
Tssr4209 13 119767718 to 119767739 21 + TSS region transcription start site region 4209
Tssr4210 13 119770200 to 119770204 4 - TSS region transcription start site region 4210
Gm46390 13 119790271 to 119791689 1418 + protein coding gene predicted gene, 46390
Tssr4211 13 119790693 to 119790710 17 - TSS region transcription start site region 4211
Tssr4212 13 119790723 to 119790743 20 - TSS region transcription start site region 4212
Tssr4213 13 119790771 to 119790793 22 - TSS region transcription start site region 4213
Tssr4214 13 119790801 to 119790842 41 - TSS region transcription start site region 4214
Tssr4215 13 119791111 to 119791128 17 - TSS region transcription start site region 4215
Tssr4216 13 119791193 to 119791215 22 + TSS region transcription start site region 4216
Tssr4217 13 119791225 to 119791257 32 + TSS region transcription start site region 4217
Tssr4218 13 119791409 to 119791496 87 - TSS region transcription start site region 4218
Gm23308 13 119813233 to 119813339 106 + snRNA gene predicted gene, 23308
AF067063 13 119827961 to 119830216 2255 - protein coding gene cDNA sequence AF067063
D13Ertd608e 13 119836006 to 119846570 10564 + protein coding gene DNA segment, Chr 13, ERATO Doi 608, expressed
Gm21358 13 119871276 to 119873295 2019 - pseudogene predicted gene, 21358
Gm37619 13 119878292 to 119879015 723 + pseudogene predicted gene, 37619
Tcstv1 13 119893388 to 119894785 1397 - protein coding gene 2-cell-stage, variable group, member 1
Gm21761 13 119912035 to 119913468 1433 - protein coding gene predicted gene, 21761
Gm21181 13 119917680 to 119918009 329 - pseudogene predicted gene, 21181
Tssr4219 13 119941978 to 119941981 3 + TSS region transcription start site region 4219
B020031M17Rik 13 119949357 to 119950806 1449 - protein coding gene RIKEN cDNA B020031M17 gene
Gm20784 13 119962244 to 119963489 1245 + pseudogene predicted gene, 20784
Gm41080 13 119968137 to 119968666 529 + protein coding gene predicted gene, 41080