Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:118613449-120243485

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Svtms 13 107477080 to 119339836 11862756 QTL survival time modifier of Sod2
Hipq1 13 110272953 to 119339836 9066883 QTL hyperinsulin production QTL 1
Ssrq11 13 116906406 to 118829453 1923047 QTL stress response QTL 11
Gm10732 13 118603418 to 118658743 55325 - lincRNA gene predicted gene 10732
Tssr124185 13 118658678 to 118658726 48 - TSS region transcription start site region 124185
Tssr124186 13 118658737 to 118658757 20 - TSS region transcription start site region 124186
Gm16263 13 118695292 to 118715396 20104 - antisense lncRNA gene predicted gene 16263
Gm3247 13 118712696 to 118715039 2343 unclassified gene predicted gene 3247
Cpgi6139 13 118714229 to 118714946 717 CpG island CpG island 6139
Tssr121243 13 118714378 to 118714388 10 + TSS region transcription start site region 121243
Tssr4183 13 118714605 to 118714616 11 + TSS region transcription start site region 4183
Tssr121244 13 118714621 to 118714676 55 + TSS region transcription start site region 121244
Tssr121245 13 118714678 to 118714701 23 + TSS region transcription start site region 121245
Fgf10 13 118714699 to 118792573 77874 + protein coding gene fibroblast growth factor 10
Tssr121246 13 118714911 to 118714950 39 + TSS region transcription start site region 121246
Tssr121247 13 118715012 to 118715027 15 + TSS region transcription start site region 121247
Cpgi6140 13 118715064 to 118715484 420 CpG island CpG island 6140
Tssr124187 13 118715657 to 118715669 12 - TSS region transcription start site region 124187
Tssr124188 13 118715686 to 118715735 49 - TSS region transcription start site region 124188
Tssr121248 13 118732824 to 118732827 3 + TSS region transcription start site region 121248
Tssr121249 13 118790480 to 118790485 5 + TSS region transcription start site region 121249
D13Mit78 13 118829225 to 118829453 228 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 78
Gm47335 13 118858145 to 118858414 269 - pseudogene predicted gene, 47335
D13Mit131 13 119074697 to 119074822 125 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 131
D13Dcr17 13 119246624 to 119246730 106 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 17
Gm44488 13 119269486 to 119269604 118 - miRNA gene predicted gene, 44488
Gm47336 13 119271619 to 119279545 7926 - lincRNA gene predicted gene, 47336
Nnt 13 119335527 to 119409257 73730 - protein coding gene nicotinamide nucleotide transhydrogenase
D13Mit35 13 119339644 to 119339836 192 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 35
Tssr124189 13 119339914 to 119339938 24 - TSS region transcription start site region 124189
Tssr124190 13 119353202 to 119353221 19 - TSS region transcription start site region 124190
Tssr124191 13 119376264 to 119376268 4 - TSS region transcription start site region 124191
Tssr124192 13 119389283 to 119389285 2 - TSS region transcription start site region 124192
Tssr124193 13 119399743 to 119399747 4 - TSS region transcription start site region 124193
Gm9777 13 119406126 to 119409426 3300 unclassified gene predicted gene 9777
Tssr124194 13 119408129 to 119408148 19 - TSS region transcription start site region 124194
Tssr124195 13 119408160 to 119408180 20 - TSS region transcription start site region 124195
Tssr121250 13 119408202 to 119408210 8 + TSS region transcription start site region 121250
Cpgi6141 13 119408682 to 119409304 622 CpG island CpG island 6141
Tssr124196 13 119408943 to 119408974 31 - TSS region transcription start site region 124196
Tssr124197 13 119408985 to 119409003 18 - TSS region transcription start site region 124197
Tssr124198 13 119409006 to 119409018 12 - TSS region transcription start site region 124198
Tssr124199 13 119409184 to 119409246 62 - TSS region transcription start site region 124199
Tssr124200 13 119409444 to 119409465 21 - TSS region transcription start site region 124200
Cpgi6142 13 119428282 to 119429876 1594 CpG island CpG island 6142
Tssr121251 13 119428382 to 119428385 3 + TSS region transcription start site region 121251
Tssr121252 13 119428396 to 119428413 17 + TSS region transcription start site region 121252
Tssr121253 13 119428416 to 119428446 30 + TSS region transcription start site region 121253
Tssr121254 13 119428449 to 119428485 36 + TSS region transcription start site region 121254
Tssr121255 13 119428490 to 119428504 14 + TSS region transcription start site region 121255
Tssr121256 13 119428561 to 119428575 14 + TSS region transcription start site region 121256
Tssr121257 13 119428583 to 119428612 29 + TSS region transcription start site region 121257
Paip1 13 119428601 to 119458218 29617 + protein coding gene polyadenylate binding protein-interacting protein 1
Tssr121258 13 119428888 to 119428960 72 + TSS region transcription start site region 121258
Tssr121259 13 119429265 to 119429272 7 + TSS region transcription start site region 121259
Tssr121260 13 119429669 to 119429680 11 + TSS region transcription start site region 121260
Tssr121261 13 119429715 to 119429730 15 + TSS region transcription start site region 121261
Tssr121262 13 119457134 to 119457138 4 + TSS region transcription start site region 121262
Cpgi6143 13 119462585 to 119463181 596 CpG island CpG island 6143
Tssr121263 13 119462752 to 119462810 58 + TSS region transcription start site region 121263
4833420G17Rik 13 119462768 to 119486120 23352 + protein coding gene RIKEN cDNA 4833420G17 gene
Tssr121264 13 119462835 to 119462856 21 + TSS region transcription start site region 121264
Tgq24 13 119466094 to 119466094 0 QTL triglyceride QTL 24
Tssr121265 13 119466393 to 119466397 4 + TSS region transcription start site region 121265
Gm9752 13 119473804 to 119476761 2957 - unclassified non-coding RNA gene predicted gene 9752
3110070M22Rik 13 119487261 to 119488383 1122 - unclassified gene RIKEN cDNA 3110070M22 gene
Cpgi6144 13 119487759 to 119489202 1443 CpG island CpG island 6144
Tmem267 13 119488039 to 119610459 122420 + protein coding gene transmembrane protein 267
Tssr121266 13 119488080 to 119488093 13 + TSS region transcription start site region 121266
Tssr121267 13 119488116 to 119488124 8 + TSS region transcription start site region 121267
Tssr124201 13 119488334 to 119488389 55 - TSS region transcription start site region 124201
Tssr124202 13 119488402 to 119488411 9 - TSS region transcription start site region 124202
Tssr121268 13 119488425 to 119488478 53 + TSS region transcription start site region 121268
Tssr121269 13 119488487 to 119488529 42 + TSS region transcription start site region 121269
Tssr121270 13 119488661 to 119488736 75 + TSS region transcription start site region 121270
Tssr121271 13 119488809 to 119488837 28 + TSS region transcription start site region 121271
Cpgi6145 13 119494984 to 119495472 488 CpG island CpG island 6145
Tssr4184 13 119597787 to 119597805 18 - TSS region transcription start site region 4184
Tssr4185 13 119598005 to 119598039 34 - TSS region transcription start site region 4185
Tssr4186 13 119601513 to 119601531 18 - TSS region transcription start site region 4186
Gm48265 13 119609765 to 119613472 3707 - lincRNA gene predicted gene, 48265
Tssr4187 13 119613858 to 119613878 20 - TSS region transcription start site region 4187
Tssr4188 13 119623796 to 119623811 15 + TSS region transcription start site region 4188
Ccl28 13 119623819 to 119654359 30540 + protein coding gene chemokine (C-C motif) ligand 28
Tssr4189 13 119623826 to 119623869 43 + TSS region transcription start site region 4189
Tssr4190 13 119649406 to 119649445 39 + TSS region transcription start site region 4190
Gm48300 13 119655462 to 119655858 396 - pseudogene predicted gene, 48300
Tssr4191 13 119680038 to 119680059 21 + TSS region transcription start site region 4191
1700074H08Rik 13 119680042 to 119681582 1540 + lincRNA gene RIKEN cDNA 1700074H08 gene
Tssr4192 13 119689928 to 119689956 28 - TSS region transcription start site region 4192
Hmgcs1 13 119690379 to 119708260 17881 + protein coding gene 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 1
Tssr4193 13 119690384 to 119690400 16 + TSS region transcription start site region 4193
Tssr4194 13 119690420 to 119690431 11 + TSS region transcription start site region 4194
Tssr4195 13 119690452 to 119690471 19 + TSS region transcription start site region 4195
Tssr4196 13 119695849 to 119695872 23 - TSS region transcription start site region 4196
Gm48342 13 119698360 to 119704549 6189 - antisense lncRNA gene predicted gene, 48342
Tssr4197 13 119699928 to 119699954 26 + TSS region transcription start site region 4197
Tssr4198 13 119707246 to 119707370 124 + TSS region transcription start site region 4198
Nim1k 13 119710094 to 119755882 45788 - protein coding gene NIM1 serine/threonine protein kinase
Tssr4199 13 119713902 to 119713905 3 + TSS region transcription start site region 4199
Tssr4200 13 119727777 to 119727787 10 - TSS region transcription start site region 4200
Tssr4201 13 119728413 to 119728420 7 - TSS region transcription start site region 4201
Tssr4202 13 119732772 to 119732774 2 - TSS region transcription start site region 4202
Tssr4203 13 119755387 to 119755398 11 + TSS region transcription start site region 4203
Tssr4204 13 119755813 to 119755826 13 - TSS region transcription start site region 4204
Tssr4205 13 119755844 to 119755909 65 - TSS region transcription start site region 4205
Tssr4206 13 119755944 to 119755958 14 - TSS region transcription start site region 4206
Tssr4207 13 119755968 to 119756035 67 - TSS region transcription start site region 4207
Gm41077 13 119756093 to 119769532 13439 + antisense lncRNA gene predicted gene, 41077
Tssr4208 13 119756112 to 119756148 36 + TSS region transcription start site region 4208
Zfp131 13 119765187 to 119790889 25702 - protein coding gene zinc finger protein 131
Tssr4209 13 119767718 to 119767739 21 + TSS region transcription start site region 4209
Tssr4210 13 119770200 to 119770204 4 - TSS region transcription start site region 4210
Gm46390 13 119790271 to 119791689 1418 + protein coding gene predicted gene, 46390
Tssr4211 13 119790693 to 119790710 17 - TSS region transcription start site region 4211
Tssr4212 13 119790723 to 119790743 20 - TSS region transcription start site region 4212
Tssr4213 13 119790771 to 119790793 22 - TSS region transcription start site region 4213
Tssr4214 13 119790801 to 119790842 41 - TSS region transcription start site region 4214
Tssr4215 13 119791111 to 119791128 17 - TSS region transcription start site region 4215
Tssr4216 13 119791193 to 119791215 22 + TSS region transcription start site region 4216
Tssr4217 13 119791225 to 119791257 32 + TSS region transcription start site region 4217
Tssr4218 13 119791409 to 119791496 87 - TSS region transcription start site region 4218
Gm23308 13 119813233 to 119813339 106 + snRNA gene predicted gene, 23308
AF067063 13 119827961 to 119830216 2255 - protein coding gene cDNA sequence AF067063
D13Ertd608e 13 119836006 to 119846570 10564 + protein coding gene DNA segment, Chr 13, ERATO Doi 608, expressed
Gm21358 13 119871276 to 119873295 2019 - pseudogene predicted gene, 21358
Gm37619 13 119878292 to 119879015 723 + pseudogene predicted gene, 37619
Tcstv1 13 119893388 to 119894785 1397 - protein coding gene 2-cell-stage, variable group, member 1
Gm21761 13 119912035 to 119913468 1433 - protein coding gene predicted gene, 21761
Gm21181 13 119917680 to 119918009 329 - pseudogene predicted gene, 21181
Tssr4219 13 119941978 to 119941981 3 + TSS region transcription start site region 4219
B020031M17Rik 13 119949357 to 119950806 1449 - protein coding gene RIKEN cDNA B020031M17 gene
Gm20784 13 119962244 to 119963489 1245 + pseudogene predicted gene, 20784
Gm41080 13 119968137 to 119968666 529 + protein coding gene predicted gene, 41080
Tssr4220 13 120010385 to 120010420 35 + TSS region transcription start site region 4220
Tssr4221 13 120012244 to 120012257 13 + TSS region transcription start site region 4221
Gm21370 13 120015306 to 120016005 699 - pseudogene predicted gene, 21370
Tssr4222 13 120015585 to 120015602 17 + TSS region transcription start site region 4222
Tssr4223 13 120017025 to 120017045 20 + TSS region transcription start site region 4223
Gm36161 13 120017033 to 120018215 1182 + lincRNA gene predicted gene, 36161
Gm22108 13 120017108 to 120017213 105 - snRNA gene predicted gene, 22108
Tssr4224 13 120017893 to 120017902 9 + TSS region transcription start site region 4224
Tssr4225 13 120017972 to 120017983 11 + TSS region transcription start site region 4225
Tssr4226 13 120018016 to 120018036 20 + TSS region transcription start site region 4226
Tssr4227 13 120018081 to 120018127 46 + TSS region transcription start site region 4227
Tssr4228 13 120018146 to 120018157 11 + TSS region transcription start site region 4228
Tssr4229 13 120018158 to 120018171 13 + TSS region transcription start site region 4229
Tssr4230 13 120018185 to 120018198 13 + TSS region transcription start site region 4230
Tssr4231 13 120018208 to 120018268 60 + TSS region transcription start site region 4231
Tssr4232 13 120018338 to 120018373 35 + TSS region transcription start site region 4232
Tssr4233 13 120018493 to 120018499 6 + TSS region transcription start site region 4233
Tssr4234 13 120019186 to 120019192 6 + TSS region transcription start site region 4234
Gm36079 13 120026439 to 120027011 572 - protein coding gene predicted gene, 36079
Gm21188 13 120034605 to 120052194 17589 - protein coding gene predicted gene, 21188
Tssr4235 13 120044033 to 120044039 6 - TSS region transcription start site region 4235
Tssr4236 13 120044211 to 120044226 15 + TSS region transcription start site region 4236
Tssr4237 13 120044297 to 120044338 41 - TSS region transcription start site region 4237
Tssr4238 13 120044351 to 120044364 13 - TSS region transcription start site region 4238
Gm24798 13 120045334 to 120045439 105 + snRNA gene predicted gene, 24798
Gm31544 13 120046573 to 120047013 440 + pseudogene predicted gene, 31544
Gm41081 13 120093848 to 120094377 529 - pseudogene predicted gene, 41081
Gm21378 13 120099087 to 120100332 1245 - pseudogene predicted gene, 21378
Gm20767 13 120140246 to 120155335 15089 + protein coding gene predicted gene, 20767
Gm20769 13 120149379 to 120149708 329 + pseudogene predicted gene, 20769
Gm39477 13 120168258 to 120172095 3837 - lncRNA gene predicted gene, 39477
Tssr4239 13 120172406 to 120172412 6 + TSS region transcription start site region 4239
Gm21818 13 120173184 to 120173696 512 + protein coding gene predicted gene, 21818
Gm20763 13 120194514 to 120196371 1857 + pseudogene predicted gene, 20763
Gm21762 13 120214593 to 120215947 1354 - protein coding gene predicted gene, 21762
Gm21731 13 120239111 to 120241367 2256 + protein coding gene predicted gene, 21731