Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:117940657-119490669

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Svtms 13 107477080 to 119339836 11862756 QTL survival time modifier of Sod2
Hipq1 13 110272953 to 119339836 9066883 QTL hyperinsulin production QTL 1
Ssrq11 13 116906406 to 118829453 1923047 QTL stress response QTL 11
Hcn1 13 117602320 to 117981028 378708 + protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 1
Gm3474 13 117943664 to 117959078 15414 - lncRNA gene predicted gene 3474
Tssr121238 13 117947121 to 117947123 2 + TSS region transcription start site region 121238
Tssr121239 13 117971583 to 117971597 14 + TSS region transcription start site region 121239
6330563C09Rik 13 117985192 to 117987409 2217 unclassified non-coding RNA gene RIKEN cDNA 6330563C09 gene
Gm26349 13 118036614 to 118036743 129 + snoRNA gene predicted gene, 26349
Tssr121240 13 118047293 to 118047302 9 + TSS region transcription start site region 121240
Gm9633 13 118047320 to 118047944 624 + pseudogene predicted gene 9633
D13Ertd104e 13 118280691 to 118280898 207 DNA segment DNA segment, Chr 13, ERATO Doi 104, expressed
D13Ertd94e 13 118280691 to 118280925 234 DNA segment DNA segment, Chr 13, ERATO Doi 94, expressed
Mrps30 13 118380110 to 118387252 7142 - protein coding gene mitochondrial ribosomal protein S30
Cpgi6138 13 118386399 to 118387498 1099 CpG island CpG island 6138
B430218F22Rik 13 118386630 to 118388124 1494 + unclassified gene RIKEN cDNA B430218F22 gene
Tssr124183 13 118387181 to 118387196 15 - TSS region transcription start site region 124183
Tssr124184 13 118387224 to 118387275 51 - TSS region transcription start site region 124184
Gm47563 13 118510358 to 118510913 555 - pseudogene predicted gene, 47563
Tssr121241 13 118556145 to 118556161 16 + TSS region transcription start site region 121241
Tssr121242 13 118556162 to 118556173 11 + TSS region transcription start site region 121242
1700003P14Rik 13 118556168 to 118588629 32461 + lincRNA gene RIKEN cDNA 1700003P14 gene
Gm9098 13 118568775 to 118569782 1007 - pseudogene predicted gene 9098
Gm47330 13 118589732 to 118590257 525 + pseudogene predicted gene, 47330
Gm18361 13 118598039 to 118598918 879 - pseudogene predicted gene, 18361
Gm10732 13 118603418 to 118658743 55325 - lincRNA gene predicted gene 10732
Tssr124185 13 118658678 to 118658726 48 - TSS region transcription start site region 124185
Tssr124186 13 118658737 to 118658757 20 - TSS region transcription start site region 124186
Gm16263 13 118695292 to 118715396 20104 - antisense lncRNA gene predicted gene 16263
Gm3247 13 118712696 to 118715039 2343 unclassified gene predicted gene 3247
Cpgi6139 13 118714229 to 118714946 717 CpG island CpG island 6139
Tssr121243 13 118714378 to 118714388 10 + TSS region transcription start site region 121243
Tssr4183 13 118714605 to 118714616 11 + TSS region transcription start site region 4183
Tssr121244 13 118714621 to 118714676 55 + TSS region transcription start site region 121244
Tssr121245 13 118714678 to 118714701 23 + TSS region transcription start site region 121245
Fgf10 13 118714699 to 118792573 77874 + protein coding gene fibroblast growth factor 10
Tssr121246 13 118714911 to 118714950 39 + TSS region transcription start site region 121246
Tssr121247 13 118715012 to 118715027 15 + TSS region transcription start site region 121247
Cpgi6140 13 118715064 to 118715484 420 CpG island CpG island 6140
Tssr124187 13 118715657 to 118715669 12 - TSS region transcription start site region 124187
Tssr124188 13 118715686 to 118715735 49 - TSS region transcription start site region 124188
Tssr121248 13 118732824 to 118732827 3 + TSS region transcription start site region 121248
Tssr121249 13 118790480 to 118790485 5 + TSS region transcription start site region 121249
D13Mit78 13 118829225 to 118829453 228 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 78
Gm47335 13 118858145 to 118858414 269 - pseudogene predicted gene, 47335
D13Mit131 13 119074697 to 119074822 125 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 131
D13Dcr17 13 119246624 to 119246730 106 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 17
Gm44488 13 119269486 to 119269604 118 - miRNA gene predicted gene, 44488
Gm47336 13 119271619 to 119279545 7926 - lincRNA gene predicted gene, 47336
Nnt 13 119335527 to 119409257 73730 - protein coding gene nicotinamide nucleotide transhydrogenase
D13Mit35 13 119339644 to 119339836 192 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 35
Tssr124189 13 119339914 to 119339938 24 - TSS region transcription start site region 124189
Tssr124190 13 119353202 to 119353221 19 - TSS region transcription start site region 124190
Tssr124191 13 119376264 to 119376268 4 - TSS region transcription start site region 124191
Tssr124192 13 119389283 to 119389285 2 - TSS region transcription start site region 124192
Tssr124193 13 119399743 to 119399747 4 - TSS region transcription start site region 124193
Gm9777 13 119406126 to 119409426 3300 unclassified gene predicted gene 9777
Tssr124194 13 119408129 to 119408148 19 - TSS region transcription start site region 124194
Tssr124195 13 119408160 to 119408180 20 - TSS region transcription start site region 124195
Tssr121250 13 119408202 to 119408210 8 + TSS region transcription start site region 121250
Cpgi6141 13 119408682 to 119409304 622 CpG island CpG island 6141
Tssr124196 13 119408943 to 119408974 31 - TSS region transcription start site region 124196
Tssr124197 13 119408985 to 119409003 18 - TSS region transcription start site region 124197
Tssr124198 13 119409006 to 119409018 12 - TSS region transcription start site region 124198
Tssr124199 13 119409184 to 119409246 62 - TSS region transcription start site region 124199
Tssr124200 13 119409444 to 119409465 21 - TSS region transcription start site region 124200
Cpgi6142 13 119428282 to 119429876 1594 CpG island CpG island 6142
Tssr121251 13 119428382 to 119428385 3 + TSS region transcription start site region 121251
Tssr121252 13 119428396 to 119428413 17 + TSS region transcription start site region 121252
Tssr121253 13 119428416 to 119428446 30 + TSS region transcription start site region 121253
Tssr121254 13 119428449 to 119428485 36 + TSS region transcription start site region 121254
Tssr121255 13 119428490 to 119428504 14 + TSS region transcription start site region 121255
Tssr121256 13 119428561 to 119428575 14 + TSS region transcription start site region 121256
Tssr121257 13 119428583 to 119428612 29 + TSS region transcription start site region 121257
Paip1 13 119428601 to 119458218 29617 + protein coding gene polyadenylate binding protein-interacting protein 1
Tssr121258 13 119428888 to 119428960 72 + TSS region transcription start site region 121258
Tssr121259 13 119429265 to 119429272 7 + TSS region transcription start site region 121259
Tssr121260 13 119429669 to 119429680 11 + TSS region transcription start site region 121260
Tssr121261 13 119429715 to 119429730 15 + TSS region transcription start site region 121261
Tssr121262 13 119457134 to 119457138 4 + TSS region transcription start site region 121262
Cpgi6143 13 119462585 to 119463181 596 CpG island CpG island 6143
Tssr121263 13 119462752 to 119462810 58 + TSS region transcription start site region 121263
4833420G17Rik 13 119462768 to 119486120 23352 + protein coding gene RIKEN cDNA 4833420G17 gene
Tssr121264 13 119462835 to 119462856 21 + TSS region transcription start site region 121264
Tgq24 13 119466094 to 119466094 0 QTL triglyceride QTL 24
Tssr121265 13 119466393 to 119466397 4 + TSS region transcription start site region 121265
Gm9752 13 119473804 to 119476761 2957 - unclassified non-coding RNA gene predicted gene 9752
3110070M22Rik 13 119487261 to 119488383 1122 - unclassified gene RIKEN cDNA 3110070M22 gene
Cpgi6144 13 119487759 to 119489202 1443 CpG island CpG island 6144
Tmem267 13 119488039 to 119610459 122420 + protein coding gene transmembrane protein 267
Tssr121266 13 119488080 to 119488093 13 + TSS region transcription start site region 121266
Tssr121267 13 119488116 to 119488124 8 + TSS region transcription start site region 121267
Tssr124201 13 119488334 to 119488389 55 - TSS region transcription start site region 124201
Tssr124202 13 119488402 to 119488411 9 - TSS region transcription start site region 124202
Tssr121268 13 119488425 to 119488478 53 + TSS region transcription start site region 121268
Tssr121269 13 119488487 to 119488529 42 + TSS region transcription start site region 121269
Tssr121270 13 119488661 to 119488736 75 + TSS region transcription start site region 121270
Tssr121271 13 119488809 to 119488837 28 + TSS region transcription start site region 121271