Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:117755358-119265913

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ssrq11 13 116906406 to 118829453 1923047 QTL stress response QTL 11
Hcn1 13 117602320 to 117981028 378708 + protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 1
C030014A21Rik 13 117822312 to 117823323 1011 unclassified gene RIKEN cDNA C030014A21 gene
Tssr4182 13 117909211 to 117909216 5 + TSS region transcription start site region 4182
Gm3474 13 117943664 to 117959078 15414 - lncRNA gene predicted gene 3474
Tssr121238 13 117947121 to 117947123 2 + TSS region transcription start site region 121238
Tssr121239 13 117971583 to 117971597 14 + TSS region transcription start site region 121239
6330563C09Rik 13 117985192 to 117987409 2217 unclassified non-coding RNA gene RIKEN cDNA 6330563C09 gene
Gm26349 13 118036614 to 118036743 129 + snoRNA gene predicted gene, 26349
Tssr121240 13 118047293 to 118047302 9 + TSS region transcription start site region 121240
Gm9633 13 118047320 to 118047944 624 + pseudogene predicted gene 9633
D13Ertd104e 13 118280691 to 118280898 207 DNA segment DNA segment, Chr 13, ERATO Doi 104, expressed
D13Ertd94e 13 118280691 to 118280925 234 DNA segment DNA segment, Chr 13, ERATO Doi 94, expressed
Mrps30 13 118380110 to 118387252 7142 - protein coding gene mitochondrial ribosomal protein S30
Cpgi6138 13 118386399 to 118387498 1099 CpG island CpG island 6138
B430218F22Rik 13 118386630 to 118388124 1494 + unclassified gene RIKEN cDNA B430218F22 gene
Tssr124183 13 118387181 to 118387196 15 - TSS region transcription start site region 124183
Tssr124184 13 118387224 to 118387275 51 - TSS region transcription start site region 124184
Gm47563 13 118510358 to 118510913 555 - pseudogene predicted gene, 47563
Tssr121241 13 118556145 to 118556161 16 + TSS region transcription start site region 121241
Tssr121242 13 118556162 to 118556173 11 + TSS region transcription start site region 121242
1700003P14Rik 13 118556168 to 118588629 32461 + lincRNA gene RIKEN cDNA 1700003P14 gene
Gm9098 13 118568775 to 118569782 1007 - pseudogene predicted gene 9098
Gm47330 13 118589732 to 118590257 525 + pseudogene predicted gene, 47330
Gm18361 13 118598039 to 118598918 879 - pseudogene predicted gene, 18361
Gm10732 13 118603418 to 118658743 55325 - lincRNA gene predicted gene 10732
Tssr124185 13 118658678 to 118658726 48 - TSS region transcription start site region 124185
Tssr124186 13 118658737 to 118658757 20 - TSS region transcription start site region 124186
Gm16263 13 118695292 to 118715396 20104 - antisense lncRNA gene predicted gene 16263
Gm3247 13 118712696 to 118715039 2343 unclassified gene predicted gene 3247
Cpgi6139 13 118714229 to 118714946 717 CpG island CpG island 6139
Tssr121243 13 118714378 to 118714388 10 + TSS region transcription start site region 121243
Tssr4183 13 118714605 to 118714616 11 + TSS region transcription start site region 4183
Tssr121244 13 118714621 to 118714676 55 + TSS region transcription start site region 121244
Tssr121245 13 118714678 to 118714701 23 + TSS region transcription start site region 121245
Fgf10 13 118714699 to 118792573 77874 + protein coding gene fibroblast growth factor 10
Tssr121246 13 118714911 to 118714950 39 + TSS region transcription start site region 121246
Tssr121247 13 118715012 to 118715027 15 + TSS region transcription start site region 121247
Cpgi6140 13 118715064 to 118715484 420 CpG island CpG island 6140
Tssr124187 13 118715657 to 118715669 12 - TSS region transcription start site region 124187
Tssr124188 13 118715686 to 118715735 49 - TSS region transcription start site region 124188
Tssr121248 13 118732824 to 118732827 3 + TSS region transcription start site region 121248
Tssr121249 13 118790480 to 118790485 5 + TSS region transcription start site region 121249
D13Mit78 13 118829225 to 118829453 228 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 78
Gm47335 13 118858145 to 118858414 269 - pseudogene predicted gene, 47335
D13Mit131 13 119074697 to 119074822 125 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 131
D13Dcr17 13 119246624 to 119246730 106 DNA segment DNA Segment, Chr 13, Derry C. Roopenian 17