Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:117238664-118664078

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56 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Emb 13 117220573 to 117274415 53842 + protein coding gene embigin
Tssr124179 13 117242697 to 117242709 12 - TSS region transcription start site region 124179
Tssr121223 13 117245448 to 117245451 3 + TSS region transcription start site region 121223
Tssr121224 13 117249434 to 117249446 12 + TSS region transcription start site region 121224
Tssr121225 13 117249698 to 117249719 21 + TSS region transcription start site region 121225
Tssr121226 13 117250586 to 117250606 20 + TSS region transcription start site region 121226
D13Mit204 13 117259907 to 117260178 271 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 204
Tssr121227 13 117264435 to 117264451 16 + TSS region transcription start site region 121227
A430106F12Rik 13 117265023 to 117265614 591 unclassified gene RIKEN cDNA A430106F12 gene
Tssr124180 13 117267479 to 117267496 17 - TSS region transcription start site region 124180
Tssr121228 13 117272038 to 117272076 38 + TSS region transcription start site region 121228
Tssr124181 13 117272077 to 117272098 21 - TSS region transcription start site region 124181
Tssr124182 13 117273073 to 117273104 31 - TSS region transcription start site region 124182
Tssr121229 13 117273297 to 117273333 36 + TSS region transcription start site region 121229
Gm6421 13 117358212 to 117358620 408 - pseudogene predicted pseudogene 6421
Gm5200 13 117457836 to 117459075 1239 - pseudogene predicted gene 5200
Gm46438 13 117600271 to 117602333 2062 - lncRNA gene predicted gene, 46438
Tssr121230 13 117601827 to 117601832 5 + TSS region transcription start site region 121230
Cpgi6137 13 117602096 to 117603330 1234 CpG island CpG island 6137
Tssr121231 13 117602309 to 117602325 16 + TSS region transcription start site region 121231
Hcn1 13 117602320 to 117981028 378708 + protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 1
Tssr121232 13 117602331 to 117602338 7 + TSS region transcription start site region 121232
Tssr121233 13 117602439 to 117602482 43 + TSS region transcription start site region 121233
Tssr121234 13 117602502 to 117602513 11 + TSS region transcription start site region 121234
Fexq2 13 117604983 to 117604983 0 QTL fear expression QTL 2
Tssr121235 13 117666484 to 117666514 30 + TSS region transcription start site region 121235
4933413L06Rik 13 117706764 to 117720011 13247 - antisense lncRNA gene RIKEN cDNA 4933413L06 gene
Tssr121236 13 117709014 to 117709017 3 + TSS region transcription start site region 121236
Tssr121237 13 117724899 to 117724900 1 + TSS region transcription start site region 121237
Gm18989 13 117741095 to 117741819 724 - pseudogene predicted gene, 18989
C030014A21Rik 13 117822312 to 117823323 1011 unclassified gene RIKEN cDNA C030014A21 gene
Tssr4182 13 117909211 to 117909216 5 + TSS region transcription start site region 4182
Gm3474 13 117943664 to 117959078 15414 - lncRNA gene predicted gene 3474
Tssr121238 13 117947121 to 117947123 2 + TSS region transcription start site region 121238
Tssr121239 13 117971583 to 117971597 14 + TSS region transcription start site region 121239
6330563C09Rik 13 117985192 to 117987409 2217 unclassified non-coding RNA gene RIKEN cDNA 6330563C09 gene
Gm26349 13 118036614 to 118036743 129 + snoRNA gene predicted gene, 26349
Tssr121240 13 118047293 to 118047302 9 + TSS region transcription start site region 121240
Gm9633 13 118047320 to 118047944 624 + pseudogene predicted gene 9633
D13Ertd94e 13 118280691 to 118280925 234 DNA segment DNA segment, Chr 13, ERATO Doi 94, expressed
D13Ertd104e 13 118280691 to 118280898 207 DNA segment DNA segment, Chr 13, ERATO Doi 104, expressed
Mrps30 13 118380110 to 118387252 7142 - protein coding gene mitochondrial ribosomal protein S30
Cpgi6138 13 118386399 to 118387498 1099 CpG island CpG island 6138
B430218F22Rik 13 118386630 to 118388124 1494 + unclassified gene RIKEN cDNA B430218F22 gene
Tssr124183 13 118387181 to 118387196 15 - TSS region transcription start site region 124183
Tssr124184 13 118387224 to 118387275 51 - TSS region transcription start site region 124184
Gm47563 13 118510358 to 118510913 555 - pseudogene predicted gene, 47563
Tssr121241 13 118556145 to 118556161 16 + TSS region transcription start site region 121241
Tssr121242 13 118556162 to 118556173 11 + TSS region transcription start site region 121242
1700003P14Rik 13 118556168 to 118588629 32461 + lincRNA gene RIKEN cDNA 1700003P14 gene
Gm9098 13 118568775 to 118569782 1007 - pseudogene predicted gene 9098
Gm47330 13 118589732 to 118590257 525 + pseudogene predicted gene, 47330
Gm18361 13 118598039 to 118598918 879 - pseudogene predicted gene, 18361
Gm10732 13 118603418 to 118658743 55325 - lincRNA gene predicted gene 10732
Tssr124185 13 118658678 to 118658726 48 - TSS region transcription start site region 124185
Tssr124186 13 118658737 to 118658757 20 - TSS region transcription start site region 124186