Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:116985709-117455721

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Parp8 13 116854820 to 117025537 170717 - protein coding gene poly (ADP-ribose) polymerase family, member 8
Tssr124168 13 117014761 to 117014776 15 - TSS region transcription start site region 124168
Tssr124169 13 117014802 to 117014809 7 - TSS region transcription start site region 124169
5930433N17Rik 13 117017002 to 117019407 2405 unclassified gene RIKEN cDNA 5930433N17 gene
Tssr124170 13 117024140 to 117024172 32 - TSS region transcription start site region 124170
Cpgi6135 13 117024276 to 117026041 1765 CpG island CpG island 6135
Tssr124171 13 117024569 to 117024570 1 - TSS region transcription start site region 124171
Tssr124172 13 117025347 to 117025364 17 - TSS region transcription start site region 124172
Tssr124173 13 117025385 to 117025444 59 - TSS region transcription start site region 124173
Tssr124174 13 117025505 to 117025541 36 - TSS region transcription start site region 124174
Tssr124175 13 117025546 to 117025557 11 - TSS region transcription start site region 124175
Tssr124176 13 117025834 to 117025854 20 - TSS region transcription start site region 124176
Tssr124177 13 117025932 to 117025963 31 - TSS region transcription start site region 124177
Tssr124178 13 117033732 to 117033789 57 - TSS region transcription start site region 124178
Tssr121212 13 117048725 to 117048768 43 + TSS region transcription start site region 121212
Tssr121213 13 117050580 to 117050606 26 + TSS region transcription start site region 121213
Gm29767 13 117050734 to 117051136 402 + pseudogene predicted gene, 29767
Gm48026 13 117085631 to 117085979 348 - pseudogene predicted gene, 48026
Gm6416 13 117130027 to 117135884 5857 + lincRNA gene predicted gene 6416
Gm18945 13 117143106 to 117144195 1089 + pseudogene predicted gene, 18945
Tssr121214 13 117211930 to 117211934 4 + TSS region transcription start site region 121214
Tssr121215 13 117218388 to 117218395 7 + TSS region transcription start site region 121215
Gm17509 13 117218701 to 117221075 2374 - protein coding gene predicted gene, 17509
Tssr121216 13 117220306 to 117220334 28 + TSS region transcription start site region 121216
Cpgi6136 13 117220453 to 117221342 889 CpG island CpG island 6136
Emb 13 117220573 to 117274415 53842 + protein coding gene embigin
Tssr121217 13 117220584 to 117220637 53 + TSS region transcription start site region 121217
Tssr121218 13 117220709 to 117220721 12 + TSS region transcription start site region 121218
Tssr121219 13 117220737 to 117220754 17 + TSS region transcription start site region 121219
Tssr121220 13 117229352 to 117229362 10 + TSS region transcription start site region 121220
Gm35144 13 117229355 to 117230117 762 + pseudogene predicted gene, 35144
Tssr121221 13 117234621 to 117234625 4 + TSS region transcription start site region 121221
Tssr121222 13 117236023 to 117236024 1 + TSS region transcription start site region 121222
Tssr124179 13 117242697 to 117242709 12 - TSS region transcription start site region 124179
Tssr121223 13 117245448 to 117245451 3 + TSS region transcription start site region 121223
Tssr121224 13 117249434 to 117249446 12 + TSS region transcription start site region 121224
Tssr121225 13 117249698 to 117249719 21 + TSS region transcription start site region 121225
Tssr121226 13 117250586 to 117250606 20 + TSS region transcription start site region 121226
D13Mit204 13 117259907 to 117260178 271 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 204
Tssr121227 13 117264435 to 117264451 16 + TSS region transcription start site region 121227
A430106F12Rik 13 117265023 to 117265614 591 unclassified gene RIKEN cDNA A430106F12 gene
Tssr124180 13 117267479 to 117267496 17 - TSS region transcription start site region 124180
Tssr121228 13 117272038 to 117272076 38 + TSS region transcription start site region 121228
Tssr124181 13 117272077 to 117272098 21 - TSS region transcription start site region 124181
Tssr124182 13 117273073 to 117273104 31 - TSS region transcription start site region 124182
Tssr121229 13 117273297 to 117273333 36 + TSS region transcription start site region 121229
Gm6421 13 117358212 to 117358620 408 - pseudogene predicted pseudogene 6421