Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:116898664-119004078

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110 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbqt5 13 103205109 to 116906680 13701571 QTL tibia bone quality traits 5
Parp8 13 116854820 to 117025537 170717 - protein coding gene poly (ADP-ribose) polymerase family, member 8
D13Mit77 13 116906406 to 116906680 274 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 77
Ssrq11 13 116906406 to 118829453 1923047 QTL stress response QTL 11
Tssr124166 13 116923922 to 116923939 17 - TSS region transcription start site region 124166
Tssr124167 13 116968704 to 116968706 2 - TSS region transcription start site region 124167
Tssr124168 13 117014761 to 117014776 15 - TSS region transcription start site region 124168
Tssr124169 13 117014802 to 117014809 7 - TSS region transcription start site region 124169
5930433N17Rik 13 117017002 to 117019407 2405 unclassified gene RIKEN cDNA 5930433N17 gene
Tssr124170 13 117024140 to 117024172 32 - TSS region transcription start site region 124170
Cpgi6135 13 117024276 to 117026041 1765 CpG island CpG island 6135
Tssr124171 13 117024569 to 117024570 1 - TSS region transcription start site region 124171
Tssr124172 13 117025347 to 117025364 17 - TSS region transcription start site region 124172
Tssr124173 13 117025385 to 117025444 59 - TSS region transcription start site region 124173
Tssr124174 13 117025505 to 117025541 36 - TSS region transcription start site region 124174
Tssr124175 13 117025546 to 117025557 11 - TSS region transcription start site region 124175
Tssr124176 13 117025834 to 117025854 20 - TSS region transcription start site region 124176
Tssr124177 13 117025932 to 117025963 31 - TSS region transcription start site region 124177
Tssr124178 13 117033732 to 117033789 57 - TSS region transcription start site region 124178
Tssr121212 13 117048725 to 117048768 43 + TSS region transcription start site region 121212
Tssr121213 13 117050580 to 117050606 26 + TSS region transcription start site region 121213
Gm29767 13 117050734 to 117051136 402 + pseudogene predicted gene, 29767
Gm48026 13 117085631 to 117085979 348 - pseudogene predicted gene, 48026
Gm6416 13 117130027 to 117135884 5857 + lincRNA gene predicted gene 6416
Gm18945 13 117143106 to 117144195 1089 + pseudogene predicted gene, 18945
Tssr121214 13 117211930 to 117211934 4 + TSS region transcription start site region 121214
Tssr121215 13 117218388 to 117218395 7 + TSS region transcription start site region 121215
Gm17509 13 117218701 to 117221075 2374 - protein coding gene predicted gene, 17509
Tssr121216 13 117220306 to 117220334 28 + TSS region transcription start site region 121216
Cpgi6136 13 117220453 to 117221342 889 CpG island CpG island 6136
Emb 13 117220573 to 117274415 53842 + protein coding gene embigin
Tssr121217 13 117220584 to 117220637 53 + TSS region transcription start site region 121217
Tssr121218 13 117220709 to 117220721 12 + TSS region transcription start site region 121218
Tssr121219 13 117220737 to 117220754 17 + TSS region transcription start site region 121219
Tssr121220 13 117229352 to 117229362 10 + TSS region transcription start site region 121220
Gm35144 13 117229355 to 117230117 762 + pseudogene predicted gene, 35144
Tssr121221 13 117234621 to 117234625 4 + TSS region transcription start site region 121221
Tssr121222 13 117236023 to 117236024 1 + TSS region transcription start site region 121222
Tssr124179 13 117242697 to 117242709 12 - TSS region transcription start site region 124179
Tssr121223 13 117245448 to 117245451 3 + TSS region transcription start site region 121223
Tssr121224 13 117249434 to 117249446 12 + TSS region transcription start site region 121224
Tssr121225 13 117249698 to 117249719 21 + TSS region transcription start site region 121225
Tssr121226 13 117250586 to 117250606 20 + TSS region transcription start site region 121226
D13Mit204 13 117259907 to 117260178 271 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 204
Tssr121227 13 117264435 to 117264451 16 + TSS region transcription start site region 121227
A430106F12Rik 13 117265023 to 117265614 591 unclassified gene RIKEN cDNA A430106F12 gene
Tssr124180 13 117267479 to 117267496 17 - TSS region transcription start site region 124180
Tssr121228 13 117272038 to 117272076 38 + TSS region transcription start site region 121228
Tssr124181 13 117272077 to 117272098 21 - TSS region transcription start site region 124181
Tssr124182 13 117273073 to 117273104 31 - TSS region transcription start site region 124182
Tssr121229 13 117273297 to 117273333 36 + TSS region transcription start site region 121229
Gm6421 13 117358212 to 117358620 408 - pseudogene predicted pseudogene 6421
Gm5200 13 117457836 to 117459075 1239 - pseudogene predicted gene 5200
Gm46438 13 117600271 to 117602333 2062 - lncRNA gene predicted gene, 46438
Tssr121230 13 117601827 to 117601832 5 + TSS region transcription start site region 121230
Cpgi6137 13 117602096 to 117603330 1234 CpG island CpG island 6137
Tssr121231 13 117602309 to 117602325 16 + TSS region transcription start site region 121231
Hcn1 13 117602320 to 117981028 378708 + protein coding gene hyperpolarization-activated, cyclic nucleotide-gated K+ 1
Tssr121232 13 117602331 to 117602338 7 + TSS region transcription start site region 121232
Tssr121233 13 117602439 to 117602482 43 + TSS region transcription start site region 121233
Tssr121234 13 117602502 to 117602513 11 + TSS region transcription start site region 121234
Fexq2 13 117604983 to 117604983 0 QTL fear expression QTL 2
Tssr121235 13 117666484 to 117666514 30 + TSS region transcription start site region 121235
4933413L06Rik 13 117706764 to 117720011 13247 - antisense lncRNA gene RIKEN cDNA 4933413L06 gene
Tssr121236 13 117709014 to 117709017 3 + TSS region transcription start site region 121236
Tssr121237 13 117724899 to 117724900 1 + TSS region transcription start site region 121237
Gm18989 13 117741095 to 117741819 724 - pseudogene predicted gene, 18989
C030014A21Rik 13 117822312 to 117823323 1011 unclassified gene RIKEN cDNA C030014A21 gene
Tssr4182 13 117909211 to 117909216 5 + TSS region transcription start site region 4182
Gm3474 13 117943664 to 117959078 15414 - lncRNA gene predicted gene 3474
Tssr121238 13 117947121 to 117947123 2 + TSS region transcription start site region 121238
Tssr121239 13 117971583 to 117971597 14 + TSS region transcription start site region 121239
6330563C09Rik 13 117985192 to 117987409 2217 unclassified non-coding RNA gene RIKEN cDNA 6330563C09 gene
Gm26349 13 118036614 to 118036743 129 + snoRNA gene predicted gene, 26349
Tssr121240 13 118047293 to 118047302 9 + TSS region transcription start site region 121240
Gm9633 13 118047320 to 118047944 624 + pseudogene predicted gene 9633
D13Ertd104e 13 118280691 to 118280898 207 DNA segment DNA segment, Chr 13, ERATO Doi 104, expressed
D13Ertd94e 13 118280691 to 118280925 234 DNA segment DNA segment, Chr 13, ERATO Doi 94, expressed
Mrps30 13 118380110 to 118387252 7142 - protein coding gene mitochondrial ribosomal protein S30
Cpgi6138 13 118386399 to 118387498 1099 CpG island CpG island 6138
B430218F22Rik 13 118386630 to 118388124 1494 + unclassified gene RIKEN cDNA B430218F22 gene
Tssr124183 13 118387181 to 118387196 15 - TSS region transcription start site region 124183
Tssr124184 13 118387224 to 118387275 51 - TSS region transcription start site region 124184
Gm47563 13 118510358 to 118510913 555 - pseudogene predicted gene, 47563
Tssr121241 13 118556145 to 118556161 16 + TSS region transcription start site region 121241
Tssr121242 13 118556162 to 118556173 11 + TSS region transcription start site region 121242
1700003P14Rik 13 118556168 to 118588629 32461 + lincRNA gene RIKEN cDNA 1700003P14 gene
Gm9098 13 118568775 to 118569782 1007 - pseudogene predicted gene 9098
Gm47330 13 118589732 to 118590257 525 + pseudogene predicted gene, 47330
Gm18361 13 118598039 to 118598918 879 - pseudogene predicted gene, 18361
Gm10732 13 118603418 to 118658743 55325 - lincRNA gene predicted gene 10732
Tssr124185 13 118658678 to 118658726 48 - TSS region transcription start site region 124185
Tssr124186 13 118658737 to 118658757 20 - TSS region transcription start site region 124186
Gm16263 13 118695292 to 118715396 20104 - antisense lncRNA gene predicted gene 16263
Gm3247 13 118712696 to 118715039 2343 unclassified gene predicted gene 3247
Cpgi6139 13 118714229 to 118714946 717 CpG island CpG island 6139
Tssr121243 13 118714378 to 118714388 10 + TSS region transcription start site region 121243
Tssr4183 13 118714605 to 118714616 11 + TSS region transcription start site region 4183
Tssr121244 13 118714621 to 118714676 55 + TSS region transcription start site region 121244
Tssr121245 13 118714678 to 118714701 23 + TSS region transcription start site region 121245
Fgf10 13 118714699 to 118792573 77874 + protein coding gene fibroblast growth factor 10
Tssr121246 13 118714911 to 118714950 39 + TSS region transcription start site region 121246
Tssr121247 13 118715012 to 118715027 15 + TSS region transcription start site region 121247
Cpgi6140 13 118715064 to 118715484 420 CpG island CpG island 6140
Tssr124187 13 118715657 to 118715669 12 - TSS region transcription start site region 124187
Tssr124188 13 118715686 to 118715735 49 - TSS region transcription start site region 124188
Tssr121248 13 118732824 to 118732827 3 + TSS region transcription start site region 121248
Tssr121249 13 118790480 to 118790485 5 + TSS region transcription start site region 121249
D13Mit78 13 118829225 to 118829453 228 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 78
Gm47335 13 118858145 to 118858414 269 - pseudogene predicted gene, 47335