Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 13:116256448-117058591

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbqt5 13 103205109 to 116906680 13701571 QTL tibia bone quality traits 5
Cpgi6129 13 116293895 to 116294226 331 CpG island CpG island 6129
Cpgi6130 13 116297136 to 116297635 499 CpG island CpG island 6130
Isl1 13 116298281 to 116309689 11408 - protein coding gene ISL1 transcription factor, LIM/homeodomain
Cpgi6131 13 116303024 to 116303484 460 CpG island CpG island 6131
Cpgi6132 13 116305094 to 116305515 421 CpG island CpG island 6132
Cpgi6133 13 116309331 to 116310451 1120 CpG island CpG island 6133
Tssr124163 13 116309639 to 116309699 60 - TSS region transcription start site region 124163
Tssr121211 13 116309823 to 116309841 18 + TSS region transcription start site region 121211
Gm29764 13 116330763 to 116331538 775 - pseudogene predicted gene, 29764
Gm47912 13 116361198 to 116361694 496 - pseudogene predicted gene, 47912
Mdq5 13 116444425 to 116444425 0 QTL mammary ductal QTL 5
Gm47914 13 116558311 to 116677705 119394 - lincRNA gene predicted gene, 47914
Gm47913 13 116651448 to 116663591 12143 - lincRNA gene predicted gene, 47913
Gm23198 13 116675878 to 116675968 90 + rRNA gene predicted gene, 23198
Cpgi6134 13 116705573 to 116706256 683 CpG island CpG island 6134
4930435F18Rik 13 116802095 to 116838178 36083 - lincRNA gene RIKEN cDNA 4930435F18 gene
A930041H05Rik 13 116850843 to 116852227 1384 unclassified gene RIKEN cDNA A930041H05 gene
Parp8 13 116854820 to 117025537 170717 - protein coding gene poly (ADP-ribose) polymerase family, member 8
Tssr124164 13 116876370 to 116876384 14 - TSS region transcription start site region 124164
Tssr124165 13 116888990 to 116889003 13 - TSS region transcription start site region 124165
Ssrq11 13 116906406 to 118829453 1923047 QTL stress response QTL 11
D13Mit77 13 116906406 to 116906680 274 DNA segment DNA segment, Chr 13, Massachusetts Institute of Technology 77
Tssr124166 13 116923922 to 116923939 17 - TSS region transcription start site region 124166
Tssr124167 13 116968704 to 116968706 2 - TSS region transcription start site region 124167
Tssr124168 13 117014761 to 117014776 15 - TSS region transcription start site region 124168
Tssr124169 13 117014802 to 117014809 7 - TSS region transcription start site region 124169
5930433N17Rik 13 117017002 to 117019407 2405 unclassified gene RIKEN cDNA 5930433N17 gene
Tssr124170 13 117024140 to 117024172 32 - TSS region transcription start site region 124170
Cpgi6135 13 117024276 to 117026041 1765 CpG island CpG island 6135
Tssr124171 13 117024569 to 117024570 1 - TSS region transcription start site region 124171
Tssr124172 13 117025347 to 117025364 17 - TSS region transcription start site region 124172
Tssr124173 13 117025385 to 117025444 59 - TSS region transcription start site region 124173
Tssr124174 13 117025505 to 117025541 36 - TSS region transcription start site region 124174
Tssr124175 13 117025546 to 117025557 11 - TSS region transcription start site region 124175
Tssr124176 13 117025834 to 117025854 20 - TSS region transcription start site region 124176
Tssr124177 13 117025932 to 117025963 31 - TSS region transcription start site region 124177
Tssr124178 13 117033732 to 117033789 57 - TSS region transcription start site region 124178
Tssr121212 13 117048725 to 117048768 43 + TSS region transcription start site region 121212
Tssr121213 13 117050580 to 117050606 26 + TSS region transcription start site region 121213
Gm29767 13 117050734 to 117051136 402 + pseudogene predicted gene, 29767